NO22G00390.1, NO22G00390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00390.1
Unique NameNO22G00390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length954
Alignment locationchr22:148694..150418 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:148694..150418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO22G00390.1 vs.
Match: OEL23518.1 (putative E3 ubiquitin-protein ligase RING1a [Dichanthelium oligosanthes])

HSP 1 Score: 95.5 bits (236), Expect = 3.100e-16
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 0 
Query:   40 GDTLLIVP-PSIREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAE---NKDMQARERKYEQALLRGQFK 160
            GD L++V    IR++++C IC  I+++ +A+ ECLHRFC+DC +K++RL  +     R   ECP CRT+  S+R L DDP +  L+A LYP +   EE E   N+    R +K   + L  +++
Sbjct:   90 GDELMLVKLAEIRKEVQCPICLGIIQKTRAVMECLHRFCRDCIDKSMRLGYDA----RLNNECPKCRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFNEQEMTRNKKVSSSALAMKYR 209
The following BLAST results are available for this feature:
BLAST of NO22G00390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OEL23518.13.100e-1638.71putative E3 ubiquitin-protein ligase RING1a [Dicha... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00390NO22G00390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00390.1NO22G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00390.1.cds1NO22G00390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00390.1.cds2NO22G00390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00390.1.cds3NO22G00390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00390.1.cds4NO22G00390.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00390.1.cds5NO22G00390.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00390.1.cds6NO22G00390.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00390.1 ID=NO22G00390.1|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ATGGTGTACAGATACAACATGGCTCATTTACCACTCCATGCAGGGCGGAT
GGTCCAGGCCATGGGAGACAATCTCCGTCCCTACGATATTGCACGCAGCG
GTATCCCTGTCCTTCCGGGAGATACTCTATTGATCGTCCCGCCGTCCATT
CGGGAGGACATGCGTTGCCGGATCTGCTTCGATATCGTCAAGGAGGCCAA
GGCCCTCCGTGAGTGCCTCCACCGCTTTTGCAAGGACTGTGGGGAGAAGG
CGTTGCGGCTGTCGAACGAAACAAAAACCATGAAAAGAACAGGAGCAGAG
TGCCCACTCTGCCGTACCAACATCGGGTCCAAGCGGGACTTGTACGACGA
CCCCATTTTTCAAGAGCTGGTCGCCTTGCTCTACCCCCATGTGGCCGCGG
ACGAAGAAGCCGAGAACAAGGACATGCAAGCACGGGAACGGAAGTACGAA
CAAGCCCTCCTCCGCGGGCAATTTAAGCATATCCGGGGCTCCCCTCTCCC
CTTCTCCTCCTCCTCCCTCTCCACGACGCCCCTTCCCCCCATTTTCTCTT
CTGTTCCTTTCTCGCCCAGCAACAGCGGCACCACCCCTCCTCGTCTTCCC
TACGCTCCTTCTCAGCCTCCCCCGGCTACTACTACTGCTGCGGCTGCTGC
TGCTGCTGCTGCTGCTTCTGTTGGTGACAGTGCCATTTCGTTGGGGAGAA
TAATGACTGCTGATTCGGCTGCGGCGGCGCAAGACGGAGAAAAAGGAGTA
GAAGTAGAACAACAACAGCAGAAAATGGCGAGCATCGCGAGGAAACCGGA
GTCCCTTTTTCAAATCTGCTACGTCCTCCTGCCCTACGATCCCCCCCTTC
TTCCACCGCGCCCTCCATCCCTCCTTCCTTCGTTCTCCCACCTCTCCACG
GCCCCAAGTCGTCTGCCCCCCGTCTGTGGCGAGGTCCCGGGGATGCCACT
ATGA
back to top

protein sequence of NO22G00390.1

>NO22G00390.1-protein ID=NO22G00390.1-protein|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MVYRYNMAHLPLHAGRMVQAMGDNLRPYDIARSGIPVLPGDTLLIVPPSI
REDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAE
CPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAENKDMQARERKYE
QALLRGQFKHIRGSPLPFSSSSLSTTPLPPIFSSVPFSPSNSGTTPPRLP
YAPSQPPPATTTAAAAAAAAAASVGDSAISLGRIMTADSAAAAQDGEKGV
EVEQQQQKMASIARKPESLFQICYVLLPYDPPLLPPRPPSLLPSFSHLST
APSRLPPVCGEVPGMPL*
back to top

mRNA from alignment at chr22:148694..150418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00390.1 ID=NO22G00390.1|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at chr22:148694..150418+ (Nannochloropsis oceanica)
ATGGTGTACAGATACAACATGGCTCATTTACCACTCCATGCAGGGCGGAT
GGGTGGGTGTGAATGGCCAATGGATGAAAAAATATCGTCAACCACTGGCA
TGTGTCCAGACTGACGACCTCCTCACCCCACTCTCCCTCCTCTGTCCCTG
CCCTTTGCCCCCTCTCCTTCCGCACTCTAGTCCAGGCCATGGGAGACAAT
CTCCGTCCCTACGATATTGCACGCAGCGGTATCCCTGTCCTTCCGGGAGA
TACTCTATTGATCGTCCCGCCGTCCATTCGGGAGGACATGCGTTGCCGGA
TCTGCTTCGATATCGTCAAGGAGGCCAAGGTACGCTCGAAAAACAGGAGG
AAAGGAAAGAAATAAACGAGGGGACGAAGTGGCTCTGAGAGAAATATTCA
CATGCCGGGTCATTTATCCGTTTTGACTTTTCCCTCCTTCCCTTCTTCCC
TCCCTCTCTTCCTCCCTCCGTCAGGCCCTCCGTGAGTGCCTCCACCGCTT
TTGCAAGGACTGTGGGGAGAAGGCGTTGCGGCTGTCGAACGAAACAAAAA
CCATGAAAAGAACAGGAGCAGAGTGCCCACTCTGCCGTACCAACATCGGG
TCCAAGCGGGACTTGTAGTAAGTAGAGAGAAGAGAAAGAAGGGATGGAGG
GAGGGAAAGGAACCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCATTCAC
CACTCCCACCCCCTCACTCCATTAAACCGCCACAGCGACGACCCCATTTT
TCAAGAGCTGGTCGCCTTGCTCTACCCCCATGTGGCCGCGGACGAAGAAG
CCGAGAACAAGGACATGCAAGCACGGGAACGGAAGGTCGGAAGGAGAGAG
AAAGAGGGGGATGGGGAGAAAGGGAGGGAGGGAGGAAAAAGGAAAGATAA
GGAGGGAGGAGACGAGAAATTGAAAGAAGAAGTGAAAATGAGAGGTCAGG
CAACTAAATAGCGCTACAAATAATCAATACACTTTTCTCACTCCTCTCTT
CACTCTACCGACTCACGCATCTCCCTCCCTCCCTCCTTCTCACCCTCCCT
CCCTCCTCAGTACGAACAAGCCCTCCTCCGCGGGCAATTTAAGCATATCC
GGGGCTCCCCTCTCCCCTTCTCCTCCTCCTCCCTCTCCACGACGCCCCTT
CCCCCCATTTTCTCTTCTGTTCCTTTCTCGCCCAGCAACAGCGGCACCAC
CCCTCCTCGTCTTCCCTACGCTCCTTCTCAGCCTCCCCCGGCTACTACTA
CTGCTGCGGCTGCTGCTGCTGCTGCTGCTGCTTCTGTTGGTGACAGTGCC
ATTTCGTTGGGGAGAATAATGACTGCTGATTCGGCTGCGGCGGCGCAAGA
CGGAGAAAAAGGAGTAGAAGTAGAACAACAACAGCAGAAAATGGCGAGCA
TCGCGAGGAAACCGGAGGTAAGGAGTAAGGGAGGTGGGGAGGGTGGGAGG
GAGAGAGAGGGGAACATGATATTCTCCAATCTATCCCCCTGTCGAGGCAC
CCACCCACATATACACGCCGCATCTTAATCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTTCCCCAAGTCCCTTTTTCAAATCTGCTACGTCCTCC
TGCCCTACGATCCCCCCCTTCTTCCACCGCGCCCTCCATCCCTCCTTCCT
TCGTTCTCCCACCTCTCCACGGCCCCAAGTCGTCTGCCCCCCGTCTGTGG
CGAGGTCCCGGGGATGCCACTATGA
back to top

Coding sequence (CDS) from alignment at chr22:148694..150418+

>NO22G00390.1 ID=NO22G00390.1|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr22:148694..150418+ (Nannochloropsis oceanica)
ATGGTGTACAGATACAACATGGCTCATTTACCACTCCATGCAGGGCGGAT
GGTCCAGGCCATGGGAGACAATCTCCGTCCCTACGATATTGCACGCAGCG
GTATCCCTGTCCTTCCGGGAGATACTCTATTGATCGTCCCGCCGTCCATT
CGGGAGGACATGCGTTGCCGGATCTGCTTCGATATCGTCAAGGAGGCCAA
GGCCCTCCGTGAGTGCCTCCACCGCTTTTGCAAGGACTGTGGGGAGAAGG
CGTTGCGGCTGTCGAACGAAACAAAAACCATGAAAAGAACAGGAGCAGAG
TGCCCACTCTGCCGTACCAACATCGGGTCCAAGCGGGACTTGTACGACGA
CCCCATTTTTCAAGAGCTGGTCGCCTTGCTCTACCCCCATGTGGCCGCGG
ACGAAGAAGCCGAGAACAAGGACATGCAAGCACGGGAACGGAAGTACGAA
CAAGCCCTCCTCCGCGGGCAATTTAAGCATATCCGGGGCTCCCCTCTCCC
CTTCTCCTCCTCCTCCCTCTCCACGACGCCCCTTCCCCCCATTTTCTCTT
CTGTTCCTTTCTCGCCCAGCAACAGCGGCACCACCCCTCCTCGTCTTCCC
TACGCTCCTTCTCAGCCTCCCCCGGCTACTACTACTGCTGCGGCTGCTGC
TGCTGCTGCTGCTGCTTCTGTTGGTGACAGTGCCATTTCGTTGGGGAGAA
TAATGACTGCTGATTCGGCTGCGGCGGCGCAAGACGGAGAAAAAGGAGTA
GAAGTAGAACAACAACAGCAGAAAATGGCGAGCATCGCGAGGAAACCGGA
GTCCCTTTTTCAAATCTGCTACGTCCTCCTGCCCTACGATCCCCCCCTTC
TTCCACCGCGCCCTCCATCCCTCCTTCCTTCGTTCTCCCACCTCTCCACG
GCCCCAAGTCGTCTGCCCCCCGTCTGTGGCGAGGTCCCGGGGATGCCACT
ATGA
back to top
Synonyms
Publications