NO22G00180.1, NO22G00180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00180.1
Unique NameNO22G00180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length918
Alignment locationchr22:72742..74457 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:72742..74457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO22G00180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00180NO22G00180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00180.1NO22G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00180.1.cds1NO22G00180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00180.1.cds2NO22G00180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00180.1.cds3NO22G00180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00180.1.cds4NO22G00180.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00180.1.cds5NO22G00180.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00180.1.cds6NO22G00180.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00180.1 ID=NO22G00180.1|Name=NO22G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=918bp
ATGAGCAGCGCCGTTACTGACACGTCCTCCACTTCGTCCCTCCTCTTCTG
CGGCAGCTTTGCACGAGGGAAAAATGGGGATTACGACTTTCAGGGGTTGG
ACATCAAACCTGCCGCTGGGGGGCGAATGCAAGGAGGAGGGGAACAGGAG
GATGAGATTGAGCTGTCGCACCCCGTTCGACTCAGGGCGGTGCGGGTGGT
GCGCCAAGGGATGTCGCTCCCCTGTCCGGAGGCGACGCCCCTGACCCCTG
AGACCCTTCCTTCCTTCCTCCTCGCCGGCTTTCCTGCCCTCCCTCCCTCC
CTCCCCCTCACCGAGGAGGCGTCAGGCCATGATTTGGACGCGGGACCGCC
CTCTTTTTGGCTGGAAGTGAATGGGATAGCAGTTAAAGAGGGGGAGGGAG
AGGAAGGTGAGGGAGGGGTGGGAAGGCAGAGAGTGCCTCTCTTGCCCTCG
ACGCAGATCACTGCGGGCAGCGACGAGGAGCTGGCTACAATCTCGACGTC
GGTAATCGTAGACCGGCTGCTGGTGAAGGGATCCTTCACTCGTGTGTTCC
TGGCATTCTACGGCGAGCTGCTGCAACGAGGCGGCTCCTCCACCCCATCC
TCCCTCCCGCCCTCCTTCCTTCATCCCCTCTGGCGTCCACGTCCATTGCC
CTCCCTTCCTCCCTCCTACCCTCCCTCCCGTCCTCCCTCTCCTCCTCCAT
TGCTACCGCCCATGTCGGTGTTGCTGGAGGGAGGGACGAAGGAGAGCGAC
GAGGAGGAGAAAAAGCGGCCTGTCTCCCTGTCTGCGTATACGGCGCTTGT
CTCCCTCCTCCGGCAGCAGCAGCAGCAGCAGCAGCAGAGGAGGGAAGAGG
CAGAGCAAGAAGGAGGAGGGGGGGGGGAGAAGGAGAGGGAGGAGGAGGAG
GAGGGGCGGCAGCAATAG
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protein sequence of NO22G00180.1

>NO22G00180.1-protein ID=NO22G00180.1-protein|Name=NO22G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MSSAVTDTSSTSSLLFCGSFARGKNGDYDFQGLDIKPAAGGRMQGGGEQE
DEIELSHPVRLRAVRVVRQGMSLPCPEATPLTPETLPSFLLAGFPALPPS
LPLTEEASGHDLDAGPPSFWLEVNGIAVKEGEGEEGEGGVGRQRVPLLPS
TQITAGSDEELATISTSVIVDRLLVKGSFTRVFLAFYGELLQRGGSSTPS
SLPPSFLHPLWRPRPLPSLPPSYPPSRPPSPPPLLPPMSVLLEGGTKESD
EEEKKRPVSLSAYTALVSLLRQQQQQQQQRREEAEQEGGGGGEKEREEEE
EGRQQ*
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mRNA from alignment at chr22:72742..74457+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00180.1 ID=NO22G00180.1|Name=NO22G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp|location=Sequence derived from alignment at chr22:72742..74457+ (Nannochloropsis oceanica)
ATGAGCAGCGCCGTTACTGACACGTCCTCCACTTCGTCCCTCCTCTTCTG
CGGCAGCTTTGCACGAGGGAAAAATGGGGATTACGACTTTCAGGTAAAAC
TGTGTGTGAGGAGAGGGTGGAGAATTGGACGTAGGAAGGGAGAGGGGAAA
AAGGAGGACGGTGAGGGCGGGGTAGGATAATCACATCTGACAACGAATAA
ATGCTATAGGGGTTGGACATCAAACCTGCCGCTGGGGGGCGAATGCAAGG
AGGAGGGGAACAGGAGGATGAGATTGAGCTGTCGCACCCCGTTCGACTCA
GGGCGGTGCGGGTGGTGCGCCAAGGTGAGGAGGAAGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGATTGAGGGAGGAAGGGAGGGAGGGCAGGGCTGGAC
TGGATGGTTGTACCCTAGGGGAAAAGGAAATGGATAGGGATGAATATTAA
TGAAAGCCAACAAAATCAAACAGGGATGTCGCTCCCCTGTCCGGAGGCGA
CGCCCCTGACCCCTGAGACCCTTCCTTCCTTCCTCCTCGCCGGCTTTCCT
GCCCTCCCTCCCTCCCTCCCCCTCACCGAGGAGGCGTCAGGCCATGATTT
GGACGCGGGACCGCCCTCTTTTTGGCTGGAAGTGAATGGGATAGCAGTTA
AAGAGGGGGAGGGAGAGGAAGGTGAGGGAGGGGTGGGAAGGCAGAGAGTG
CCTCTCTTGCCCTCGACGCAGGTGAGGGCGGGAGGGAGTGAGTGAGGGAG
TGAGGAAGCGAGGGAGGGAGAAAGAGAGAAAGAGAGAGAGGGAGGGAGAG
AAAGAGGGAGGGAGGACGTTACTATAAAATACATGCTTGCAGGACGGGCA
TGATTTGCACTAGAGAAAAAAAAAGAGTGTGACATTTCCTCCCTCCCTCC
CTCCCTCCCTCCCGCCCTCCCTCCCTCCCTCTTCAACTGCGCACTGCGCA
GATCACTGCGGGCAGCGACGAGGAGCTGGCTACAATCTCGACGTCGGTAA
TCGTAGACCGGCTGCTGGTGAAGGTAGGGAGGGAGGGAGGGAGAAAATCA
CTCGTGACGAGAAAGGCATAAAATAAAAAAGTCAAACCCTATTCATTCGC
CCCCTCCCCCCCCCCCTCCCTCCCGCACCCCCTTCCTCCCTCTCTTCCCA
GGGATCCTTCACTCGTGTGTTCCTGGCATTCTACGGCGAGCTGCTGCAAC
GAGGCGGCTCCTCCACCCCATCCTCCCTCCCGCCCTCCTTCCTTCATCCC
CTCTGGCGTCCACGTCCATTGCCCTCCCTTCCTCCCTCCTACCCTCCCTC
CCGTCCTCCCTCTCCTCCTCCATTGCTACCGCCCATGTCGGTGTTGCTGG
AGGGAGGGACGAAGGAGAGCGACGAGGAGGAGAAAAAGCGGTAGGGGTGG
AGGGATGGAGGGATGGAGGGAGGGAGGAGAGCCATAAAGTCGTCCTTTGC
TCTTCCACAGGGAGAAAAGGAGGGAGGGAGGGAGGGACAGTGGCAAGGAA
GCAGTCACCCACCTCCCTCCCTTCCCCTGTCATTTATCCTTTGAATTACA
CGCACATTAAACCAGGCCTGTCTCCCTGTCTGCGTATACGGCGCTTGTCT
CCCTCCTCCGGCAGCAGCAGCAGCAGCAGCAGCAGAGGAGGGAAGAGGCA
GAGCAAGAAGGAGGAGGGGGGGGGGAGAAGGAGAGGGAGGAGGAGGAGGA
GGGGCGGCAGCAATAG
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Coding sequence (CDS) from alignment at chr22:72742..74457+

>NO22G00180.1 ID=NO22G00180.1|Name=NO22G00180.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr22:72742..74457+ (Nannochloropsis oceanica)
ATGAGCAGCGCCGTTACTGACACGTCCTCCACTTCGTCCCTCCTCTTCTG
CGGCAGCTTTGCACGAGGGAAAAATGGGGATTACGACTTTCAGGGGTTGG
ACATCAAACCTGCCGCTGGGGGGCGAATGCAAGGAGGAGGGGAACAGGAG
GATGAGATTGAGCTGTCGCACCCCGTTCGACTCAGGGCGGTGCGGGTGGT
GCGCCAAGGGATGTCGCTCCCCTGTCCGGAGGCGACGCCCCTGACCCCTG
AGACCCTTCCTTCCTTCCTCCTCGCCGGCTTTCCTGCCCTCCCTCCCTCC
CTCCCCCTCACCGAGGAGGCGTCAGGCCATGATTTGGACGCGGGACCGCC
CTCTTTTTGGCTGGAAGTGAATGGGATAGCAGTTAAAGAGGGGGAGGGAG
AGGAAGGTGAGGGAGGGGTGGGAAGGCAGAGAGTGCCTCTCTTGCCCTCG
ACGCAGATCACTGCGGGCAGCGACGAGGAGCTGGCTACAATCTCGACGTC
GGTAATCGTAGACCGGCTGCTGGTGAAGGGATCCTTCACTCGTGTGTTCC
TGGCATTCTACGGCGAGCTGCTGCAACGAGGCGGCTCCTCCACCCCATCC
TCCCTCCCGCCCTCCTTCCTTCATCCCCTCTGGCGTCCACGTCCATTGCC
CTCCCTTCCTCCCTCCTACCCTCCCTCCCGTCCTCCCTCTCCTCCTCCAT
TGCTACCGCCCATGTCGGTGTTGCTGGAGGGAGGGACGAAGGAGAGCGAC
GAGGAGGAGAAAAAGCGGCCTGTCTCCCTGTCTGCGTATACGGCGCTTGT
CTCCCTCCTCCGGCAGCAGCAGCAGCAGCAGCAGCAGAGGAGGGAAGAGG
CAGAGCAAGAAGGAGGAGGGGGGGGGGAGAAGGAGAGGGAGGAGGAGGAG
GAGGGGCGGCAGCAATAG
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Synonyms
Publications