NO22G00170.1, NO22G00170.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G00170.1
Unique Name	NO22G00170.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3608
Alignment location	chr22:66502..72681 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:66502..72681 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO22G00170.1 vs.
Match: WP_017326070.1 (RNA polymerase sigma factor, RpoD/SigA family [Synechococcus sp. PCC 7336])

HSP 1 Score: 208.8 bits (530), Expect = 6.800e-50
Identity = 128/336 (38.10%), Postives = 195/336 (58.04%), Query Frame = 0

Query:  322 GPYSRPSRNRRGKKTSLENTHYIQQHGLESVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLTPEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLGLLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYSKYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETVGGMNLNGESMHFYDVYGDSQGQKD--AEALAHHASLQRSVSTALRALSTEERQFLRMKYGLDDGKAKTTREIAEYTHVTIEYVRRTQTKALQRLRSANTYRLLEAYV 656
            G  S PSR+   + T L    Y+Q+ G   VPLL + EE  L  + +R++ + E R +LA  L  QPS + WA    L+  EL      G RA   ++++N+RLV+S+AKKY++  ++  DLIQEGTLGL RAV+K+DPT+G++F TYA WWI+QG+ R ++  SR +R+PVH+    +K KK ++K+  E+G   + E++A  L +S  +++  LV   P+    ET  G + + E        GD    +D   E L    SL R +ST L  LS+ ER  LRM++GL+DG+  +  EI     ++ E VR+ ++KALQ+LR       +  Y+
Sbjct:   32 GERSTPSRSSSRRSTDLVRL-YLQEIG--RVPLLGRDEEVALAQKVQRYMELVEQREQLASELDSQPSLEAWAERVSLSVSELRQFQRTGSRAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIEDIAKELDLSKVQVRDLLVRV-PRSVSLETKVGKDKDTE-------LGDLLEAEDMSPEELVTRESLSRDLSTLLAELSSRERDVLRMRFGLEDGRTYSLAEIGRTLDLSRERVRQIESKALQKLRQPKRRNRIRDYL 356

The following BLAST results are available for this feature:

BLAST of NO22G00170.1 vs.

BLAST of NO22G00170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
WP_017326070.1	6.800e-50	38.10	RNA polymerase sigma factor, RpoD/SigA family [Syn...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G00170	NO22G00170	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00170.1	NO22G00170.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00170.1.cds1	NO22G00170.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds2	NO22G00170.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds3	NO22G00170.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds4	NO22G00170.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds5	NO22G00170.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds6	NO22G00170.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds7	NO22G00170.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds8	NO22G00170.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds9	NO22G00170.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds10	NO22G00170.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds11	NO22G00170.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds12	NO22G00170.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds13	NO22G00170.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds14	NO22G00170.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds15	NO22G00170.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00170.1.cds16	NO22G00170.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:66502..72681-
coding sequence from alignment at chr22:66502..72681-

mRNA sequence

>NO22G00170.1 ID=NO22G00170.1|Name=NO22G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=3608bp
ACGACAACAGAGGGTCCGTATAAAATGCCACATCTCGAAAGCTAGCTGAG
CACAATTTTAAAACTATGAGGCACAGCAGAGACACACGACGCAATATGTT
GGTGCCCCTGAACGATGCGATGGGGTGTGCGATACGCGAGTGAGGTGAAG
AACAGAGGTCGTTCACGGGTGTGGCCGAAAGTCTCATGCTTGCCCGCCCC
TCGTAAGTGAACCCCCCTCCTTTTTTGGAAGCACCACAATTTCATACACT
GCGCCGTGCCATGCACGCTTAGACTGCGGCTTTTGGGTATGCCGAACCTC
TACTCGTATCGCGCTCCATGCAGGACATCGTTTTGACACATCATTATTAA
AAATTCTTGGTTTTTGTGGCCTAGTTGTCGTTGAGGTGCAAATCAATCTT
GTCTTCGCCTTCACAGGAACAACGGGAAGGGGCACTTGCTTCGACACCTC
CAGGCGGAGGTAGGAAGCATGACGAGGACAAGGAAATGCTAGACCTGAAT
ACTCTTTTTGCGCTTGTTTTTGGTGTTCATTCTCATCCTCCCTCCATCGC
ATCGATGGATCGCAGTGTCCTCGTCACGTTGTCGTGCGGCGAGTAACAGG
ACAAGAAGCAGCAGCGAGTTCACTACATATGACCTGCCTTGCATTGAAGC
GAAAGCCCTGCATCTCGACCGACCTCGAATGACTCATCTTCCCCAAAAAC
GGAGGGGCGCGCGGTGATGGTGGAGAAGGGGACGAGAATGAATTTTGCAT
AGTGGTGCATGCGTGGCAGACCTCGTTTTGTTTGTGGGTCACTCTCCCGA
GGCAATGCGGCTTCTCCGGTCTGACATGGCGTCGACTCCCATGTATCCTA
CCGCCTCTTTTACCACCCTACACCTTCCACAAAATTGCACGAAGCGCCTG
AAGGCCGTCAGAAAAGGACATGATCGATGCGATGCAGCTAGTCACTTCTT
CCCCTCTTTCCTCTTTCTTGACCTTATTCCCCCTCCCTCCACCCCTCCCT
CCTTCCCTCCCTACCCATGTGCACATCCACCCACAAATCACAGACAGGAA
GCAAAATGGAGCAGTGCGTTAGAATAAGAATAAAGCGGCAACGACCTGGC
ATGGATACAGCCGCCGCAGTGGATTCACTATCGTCACCGCCACAATCATC
CTCCTGCTCCTCGAAGTCCCAACGGGCTTGCTTACCCCGTTGTTTGTCCT
CGTCCTTCCTCCTCGTCAGTCTTCCCTTAGCCCTCGCCTTCGTGTACCTA
AGCAGCTCCTGTCCTTCCGCAATGGCCTTCACCACCCCCTATCCTCACCA
ACATTCAAGAAGAAGAGGTGGCGGCATCCCGTCCTCCCTCCCTCCCTCCC
CCTCAACGTCGTATGCCCGTGGCGGAGCCGGTGGTAGCAGTGGAAGGGGA
GGAGGGACAGCAGCAGCGACGACGGAGAGCGCGCAGAAACAGCAGCAGCT
GCGCAACGACAAGGGGGAAGGAGCAGGAGGAGGGGTTGGGGCGAGATCGA
GAAGGAGAAAGGTTACGTCTCGGCCCGCTTCTTCGCCCGAGGAAGTTGTT
TGGGATGCCATGCTGTCCCCTTCCTCCCTCCCTTCCTCCTCCTCGAGCTC
CTTCTATTCCTCTCGTCATCACGTCCATTCTCGGCTGGACTCGTTCGGAG
AGGAAGAAGACGAGGACGAGGACGAGGCGGGAGGGCGTGAGGAGGACGAG
GAGGGAGGGCTGGAGGAGGACGAGGAGGGCGCTGCTCTCGCTTCGTTCAT
GGATGAGGAGGAGGACGAGGAGGGAGGAGGGGAGGAAGGGACAGGGGGAG
AGTTCGGAGTGGATGAGATGCTGATGCTTCCGCTGGAGGTGGGGGAGGAA
GTGGAGCAGGCCTACGTCAAGACAGCAACAACAGCATCAACAGCATCAAC
AGCATCAACAGCAGAAGCTGAGGAAGCCGCTGTGGAGGCAGAGGACGAGG
CCCAAGGCAAGATGGCCGCCACTTCGAAAGGCCCTTACTCCCGCCCGAGC
AGGAACAGGAGAGGCAAAAAGACGAGCCTTGAGAACACCCACTACATCCA
GCAGCACGGGCTGGAGTCTGTGCCTTTGTTGACGAAAAAGGAGGAGTTTG
ATTTGGGCTCTGAGGCGCGCCGATGGCTGCACATCGACGAGGCGCGCAGA
GAGCTCGCAGAGGCGCTTGGAAGGCAGCCGTCAGCGCAGGAGTGGGCCTC
GGTCGCGGGCCTGACCCCAGAGGAGCTCGAGGCCGAAATGTGGCAGGGCA
AGCGGGCTGTGCAGCGCCTGGTTCGCTCCAACATCCGCCTGGTCCTCTCC
ATAGCTAAGAAGTACCGGAGCGACTTTGTCGACTACTCGGACCTTATCCA
GGAAGGCACTCTGGGCTTGCTCCGTGCAGTGCAAAAATACGATCCAACCC
GAGGCTTTAAATTCGGAACATACGCCACGTGGTGGATCCAGCAGGGCATG
CTCCGATGCCTCTCCCACGATTCCCGCGTTGTCCGTATCCCCGTCCACGT
CCAGGCCCTCTACTCCAAGTACAAGAAGCTACGGCAGAAGTTGGAGCACG
AGCGCGGGGAGGAGGTCTCGGACGAAGAGCTCGCTCCGATGCTCAAGGTC
TCCGTGAAGCGCCTCCAGCAGCACTTGGTGCTCTGCAAGCCCCAGCGCTT
TTTCGAGGAGACTGTCGGCGGCATGAACCTGAACGGGGAGTCCATGCATT
TTTATGACGTTTACGGCGACAGTCAGGGGCAAAAGGATGCGGAGGCTCTT
GCGCACCACGCCTCGCTGCAGCGCTCCGTCTCTACGGCGTTGCGGGCGTT
GTCGACGGAGGAACGTCAGTTCCTGCGGATGAAATACGGTCTCGACGACG
GCAAAGCCAAGACCACACGTGAGATCGCGGAATACACCCACGTGACGATC
GAGTACGTTCGTCGCACTCAAACCAAGGCCCTCCAGCGCCTCCGATCCGC
CAATACCTACCGGTTGCTTGAAGCCTACGTCAATGGCCAGGAATGCGTGA
AGGAAGACCTCTTCGGGTCTCCCTCCCCTTCCTCCCTCAGCACCTCCAGG
GGGACTCAAAACCCAACCAGCGCCTCTTCTCATGGCGACGTCCCTCGAGA
TTTCCTCAAGGGCGTCCGCAATCGCAAGCGTAAGAGCTCCTCCCTCCGTC
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCGTTTCCTTTCCCGAGGAAGGGGGAAAGGAATGTGGGAAAGGTGTCAT
GATTGACCGACCCCTCACCGCCGCAGACGCAGCCGCAGAAGCAGCAGAAG
AAAAGAGGATGATGATGCTCGCCTCATCCTCCCTCTCTTCCTCCCTCCTT
CTCTCCTCCCCTTCCTACTCTCCCTACTCTCCCTCCGCGAGAAATCAGCG
GCCGGCGGAGAAAGAGAGGGTAAAAGTGGGTGTTGAGGGAGGGGCAGGGA
GGGGGAAAAAGAAGACTTCTTCCGTCCCTTCCTCCCTTCCATCCTTGCTT
AGTTTTAATGTGACGACGGGCGTGGGTGAAATGGCCGGGATCCTGGCAGG
GTTCTAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGA
GGGGAGGG

protein sequence of NO22G00170.1

>NO22G00170.1-protein ID=NO22G00170.1-protein|Name=NO22G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=847bp
MCTSTHKSQTGSKMEQCVRIRIKRQRPGMDTAAAVDSLSSPPQSSSCSSK
SQRACLPRCLSSSFLLVSLPLALAFVYLSSSCPSAMAFTTPYPHQHSRRR
GGGIPSSLPPSPSTSYARGGAGGSSGRGGGTAAATTESAQKQQQLRNDKG
EGAGGGVGARSRRRKVTSRPASSPEEVVWDAMLSPSSLPSSSSSSFYSSR
HHVHSRLDSFGEEEDEDEDEAGGREEDEEGGLEEDEEGAALASFMDEEED
EEGGGEEGTGGEFGVDEMLMLPLEVGEEVEQAYVKTATTASTASTASTAE
AEEAAVEAEDEAQGKMAATSKGPYSRPSRNRRGKKTSLENTHYIQQHGLE
SVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLT
PEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLG
LLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYS
KYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETV
GGMNLNGESMHFYDVYGDSQGQKDAEALAHHASLQRSVSTALRALSTEER
QFLRMKYGLDDGKAKTTREIAEYTHVTIEYVRRTQTKALQRLRSANTYRL
LEAYVNGQECVKEDLFGSPSPSSLSTSRGTQNPTSASSHGDVPRDFLKGV
RNRKRKSSSLRPSSSSSSSSSSSSSSSSSVSFPEEGGKECGKGVMIDRPL
TAADAAAEAAEEKRMMMLASSSLSSSLLLSSPSYSPYSPSARNQRPAEKE
RVKVGVEGGAGRGKKKTSSVPSSLPSLLSFNVTTGVGEMAGILAGF*

mRNA from alignment at chr22:66502..72681-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G00170.1 ID=NO22G00170.1|Name=NO22G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=6180bp|location=Sequence derived from alignment at chr22:66502..72681- (Nannochloropsis oceanica)
ACGACAACAGAGGGTCCGTATAAAATGCCACATCTCGAAAGCTAGCTGAG
CACAATTTTAAAACTATGAGGCACAGCAGAGACACACGACGCAATATGTT
GGTGCCCCTGAACGATGCGATGGGGTGTGCGATACGCGAGTGAGGTGAAG
AACAGAGGTCGTTCACGGGTGTGGCCGAAAGTCTCATGCTTGCCCGCCCC
TCGTAAGTGAACCCCCCTCCTTTTTTGGAAGCACCACAATTTCATACACT
GCGCCGTGCCATGCACGCTTAGACTGCGGCTTTTGGGTATGCCGAACCTC
TACTCGTATCGCGCTCCATGCAGGACATCGTTTTGACACATCATTATTAA
AAATTCTTGGTTTTTGTGGCCTAGTTGTCGTTGAGGTGCAAATCAATCTT
GTCTTCGCCTTCACAGGAACAACGGGAAGGGGCACTTGCTTCGACACCTC
CAGGCGGAGGTAGGAAGCATGACGAGGACAAGGAAATGCTAGACCTGAAT
ACTCTTTTTGCGCTTGTTTTTGGTGTTCATTCTCATCCTCCCTCCATCGC
ATCGATGGATCGCAGTGTCCTCGTCACGTTGTCGTGCGGCGAGTAACAGG
ACAAGAAGCAGCAGCGAGTTCACTACATATGACCTGCCTTGCATTGAAGC
GAAAGCCCTGCATCTCGACCGACCTCGAATGACTCATCTTCCCCAAAAAC
GGAGGGGCGCGCGGTGATGGTGGAGAAGGGGACGAGAATGAATTTTGCAT
AGTGGTGCATGCGTGGCAGACCTCGTTTTGTTTGTGGGTCACTCTCCCGA
GGCAATGCGGCTTCTCCGGTCTGACATGGCGTCGACTCCCATGTATCCTA
CCGCCTCTTTTACCACCCTACACCTTCCACAAAATTGCACGAAGCGCCTG
AAGGCCGTCAGAAAAGGACATGATCGATGCGATGCAGCTAGTCACTTCTT
CCCCTCTTTCCTCTTTCTTGACCTTATTCCCCCTCCCTCCACCCCTCCCT
CCTTCCCTCCCTACCCATGTGCACATCCACCCACAAATCACAGACAGGAA
GCAAAATGGAGCAGTGCGTTAGAATAAGAATAAAGCGGCAACGACCTGGC
ATGGATACAGCCGCCGCAGTGGATTCACTATCGTCACCGCCACAATCATC
CTCCTGCTCCTCGAAGTCCCAACGGGCTTGCTTACCCCGTTGTTTGTCCT
CGTCCTTCCTCCTCGTCAGTCTTCCCTTAGCCCTCGCCTTCGTGTACCTA
AGCAGCTCCTGTCCTTCCGCAATGGCCTTCACCACCCCCTATCCTCACCA
ACATTCAAGAAGAAGAGGTGGCGGCATCCCGTCCTCCCTCCCTCCCTCCC
CCTCAACGTCGTATGCCCGTGGCGGAGCCGGTGGTAGCAGTGGAAGGGGA
GGAGGGACAGCAGCAGCGACGACGGAGAGCGCGCAGAAACAGCAGCAGCT
GCGCAACGACAAGGGGGAAGGAGCAGGAGGAGGGGTTGGGGCGAGATCGA
GAAGGAGAAAGGTTACGTCTCGGTACGTCTGCCTTCCCTTCACCTCCCTC
CTTCCCTCCCGTCCTCCCGCCCTCCCTCCTTCCCTCCCTCTCTCTGTGGC
TTTCTCTTCTATCCTTTGACTCATTTATTCTTTCCTTTCTCCCTCCCTAT
CCCTCCCTCCCTTCCTCCCTCTCCCTCCTTCCCTCTTCAACTATCGCAGG
CCCGCTTCTTCGCCCGAGGAAGTTGTTTGGGATGCCATGCTGTCCCCTTC
CTCCCTCCCTTCCTCCTCCTCGAGCTCCTTCTATTCCTCTCGTCATCACG
TCCATTCTCGGCTGGACTCGTTCGGAGAGGAAGAAGACGAGGACGAGGAC
GAGGCGGGAGGGCGTGAGGAGGACGAGGAGGGAGGGCTGGAGGAGGACGA
GGAGGGCGCTGCTCTCGCTTCGTTCATGGATGAGGAGGAGGACGAGGAGG
GAGGAGGGGAGGAAGGGACAGGGGGAGAGTTCGGAGTGGATGAGATGCTG
ATGCTTCCGCTGGAGGTGGGGGAGGAAGTGGAGCAGGTACGTCGGGAAGA
AGGGAGACAAGAAGGGAGGGAGGGAGGGAAAGAAGGAGAGATCATATACA
CAACGCCTCCCTCTCACCTGCGCATCACCTCCTTTGAACGACAGGCCTAC
GTCAAGACAGCAACAACAGCATCAACAGCATCAACAGCATCAACAGCAGA
AGCTGAGGAAGCCGCTGTGGAGGCAGAGGACGAGGCCCAAGGCAAGGTAT
GTAGATGCCACAGAGGCTGTGAGAGGCTGTTTGTCGTCCCTTTGGCTGGA
GAGGCTGCTTCTTACTTTCTTCAATCCAGACGCCGTTTTTCGTCTTTCTG
TGTAGATGTCGTTTCTCGTAGATGCTGTTTGTCGTCCCTCCCTTCCCGAC
CTTTTTTCCTTGTCCCCTGCCAGAGATATCATTTTCTGTGTTGTACGCTT
GCCCTTATCGCCTTTATTCCCCCCCTCCCTTATCGCCATTATTCCCCCCT
CCCTCCTTCCATCCCTCCTTTCCTTAAGTCATACAGCACGCTTATCCTCC
CCTCCCTCCTCCCCTCCCTCCCTCAGATGGCCGCCACTTCGAAAGGCCCT
TACTCCCGCCCGAGCAGGAACAGGAGAGGCAAAAAGACGAGCCTTGAGAA
CACCCACTACATCCAGCAGCACGGGGTAAGATGAGAGAGGGAGACAGGGA
GGGAGGGAGGGAGGGAGGGAAGGAGGGAGCGAGGGAGCGAGGGAGCGAGG
CATGGAGGAGGATGGAGGGAGGAAGGGAGAGGGAGAGGACGAGCGAGGGA
TGGAGAGGGAGCGAGGGAGCGAGGGAGCGAGGGGATGTAGCGAGGGAAGG
AGTCACAGGGTAAATTTCGCTGTACGCATGCAGACCTCTTCCTCACCTTT
CCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCAGCTGGAGTCTGTGC
CTTTGTTGACGAAAAAGGAGGAGTTTGATTTGGGCTCTGAGGCGCGCCGA
TGGCTGCACATCGACGAGGCGCGCAGAGAGCTCGCAGAGGCGCTTGGAAG
GCAGCCGTCAGCGCAGGTAGGGACAGAGGGAGGGAGGGAGAGGGGGAGGA
AAGGGGAGGGGGAGGAAAGGGGAGGGGGGGGGGGTAGGATGCTTCCATAA
TCCCCATTTGAGTCACTCGGACACCCATCTCACGCTACCCTCCCTCCCTC
CCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCGTCCTTTAGGAGTGGGC
CTCGGTCGCGGGCCTGACCCCAGAGGAGCTCGAGGCCGAAATGTGGCAGG
GCAAGCGGGCTGTGCAGCGCCTGGTACGCCCCTCCCTCCCTCCCTCCCTT
CCTCCCTCCCTTCCTCCCTTTCTCCCTCCCTCCCTCCCTTCCCTCCTCTC
CCCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCTCTCCTT
TCCTCTCCTTTCCCCTCCTTTGTCACAAGCCCATCCATTCATTCCTACCT
CCCCTCGGCTTCCTCCCTCCCTTCCTCCCCCCCCTCCCTCACAGGTTCGC
TCCAACATCCGCCTGGTCCTCTCCATAGCTAAGAAGTACCGGAGCGACTT
TGTCGACTACTCGGACCTTATCCAGGCACGTCCCTCCCTCCCTCCCTCCC
TAACCCTCCCTCCCTCCCTCCCTAACCCTCCCTCCCTAACCCTCCCTCCC
TCCCTCCCACCCACCCTTCCCTCACAGGAAGGCACTCTGGGCTTGCTCCG
TGCAGTGCAAAAATACGATCCAACCCGAGGCTTTAAATTCGGAACATACG
CCACGTGGTGGATCCAGCAGGGTGCGCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTTCCTCCCTCCCTCGTCCTCCCTGCCTTGCACTAGCGTCGAAT
GGGCGGGCTCCACCTCGCCTCATCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCAGGCATGCTCCGATGCCTCTCCCACGATTCCCGCGTT
GTCCGTATCCCCGTCCACGTCCAGGTACCTCCCCTCCCCTCCCTCCCTCC
CTCCCTTCTGGTCCATGCTCACCCCCACCTTCCCGCCCTCCCTCTTACAG
GCCCTCTACTCCAAGTACAAGAAGCTACGGCAGAAGTTGGAGCACGAGCG
CGGGGAGGAGGTCTCGGACGAAGAGCTCGCTCCGATGCTCAAGGTACGTC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTTCCTCATTCCCCCCTC
CCAAAAACCTCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCTTCCAGGTCTCCGTGAAGCGCCTCCAGCAGCACTTGGTGCTC
TGCAAGCCCCAGCGCTTTTTCGAGGAGACTGTCGGCGGTACGTTAATCCC
TCCCTCCCTCCCTCCCTCCCTCCCTGCCAAGTCGACAAGCCCGTCCGATG
GACACTCATCCCCCTCCCTTTCCCCCTCCCTCCCTTACTCCCTCCCTCCC
TTCTGGGCAGGCATGAACCTGAACGGGGAGTCCATGCATTTTTATGACGT
TTACGGCGACAGTCAGGGGCAAAAGGATGCGGAGGCTCTTGCGCACCACG
CCTCGCTGCAGGTAGGGAGGGAGGGAGGGGCGGAGGAAGGGAGGGAAAGA
ATAAGGGACGAGGGAGGGAGGAAATGTTAGAGAAAGGGAGGCGGGGGGAG
GAGGAGGGACGGACGGAAGGAGGGACGGAAGGATCAAGAAAGCGTCCTTA
GGAACTGTTTCTCACCCAACACTCCCTCCCTCCCTCCCTCCCTCCCTCCT
TGCAGCGCTCCGTCTCTACGGCGTTGCGGGCGTTGTCGACGGAGGAACGT
CAGTTCCTGCGGATGAAATACGGTCTCGACGACGGCAAAGCCAAGACCAC
ACGGTAGGGAGCGAGGGAGCGAGGGAGGGAGGGAGGGAGGGTTAAAAGCA
GTCCTCTTCATGTACACGTGCTGTGGTCGCTCGGTCGTTCGAAGTCGTCC
ATCCTCTTCCCGCCCCCTCCCATTTCCTCCCTCCCTTCTGTGCAGTGAGA
TCGCGGAATACACCCACGTGACGATCGAGTACGTTCGTCGCACTCAAACC
AAGGCCCTCCAGCGCCTCCGATCCGCCAATACCTACCGGTTGCTTGAAGC
CTACGTCAATGGCCAGGTACCCCCCTCCCTCCCTCCCTTCCTCCCTCCCT
CCCTCCCGTTCTCCTGCCCTTTCATACATGCACGCGCATGTTTCTGCTCT
TCATCTATCTGACCCGCGCGCCCCTCCTTCCCTCCCTCCGTCCCTCCCTT
CCAGGAATGCGTGAAGGAAGACCTCTTCGGGTCTCCCTCCCCTTCCTCCC
TCAGCACCTCCAGGGGGACTCAAAACCCAACCAGCGCCTCTTCTCATGGT
AAGCCTTTTTTTCCTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTT
TTTCTTTTTCTTTTTTTTCCTTTTTCCTTTTTCTTTTTTCCTTTTTCTTA
TTCTTTTCTTTTCCCTTCTCGTCTTTTCTTTTTTATAGATTTTTTTTTCC
TTTTCTCTTCCCCCCCCTTCCATCCCCTTCCCGCCCTCCTTTCATCCTCA
CAAGCCGCCTCTATCGCTAACCCCACCTGCCCTCCGTTCCTCCCTCCCTC
CCTCAGGCGACGTCCCTCGAGATTTCCTCAAGGGCGTCCGCAATCGCAAG
CGTAAGAGCTCCTCCCTCCGTCCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCGTTTCCTTTCCCGAGGAAGGGGGAA
AGGAATGTGGGAAAGGTGTCATGATTGACCGACCCCTCACCGCCGCAGAC
GCAGCCGCAGAAGCAGCAGAAGAAAAGAGGATGATGATGCTCGCCTCATC
CTCCCTCTCTTCCTCCCTCCTTCTCTCCTCCCCTTCCTACTCTCCCTACT
CTCCCTCCGCGAGAAATCAGCGGCCGGCGGAGAAAGAGAGGGTAAAAGTG
GGTGTTGAGGGAGGGGCAGGGAGGGGGAAAAAGAAGACTTCTTCCGTCCC
TTCCTCCCTTCCATCCTTGCTTAGTTTTAATGTGACGACGGGCGTGGGTG
AAATGGCCGGGATCCTGGCAGGGTTCTAGGGAGGGAAGGAGGGAGGGAAG
GAGGGAGGGAAGGAGGGAGGGAGGGGAGGG

Coding sequence (CDS) from alignment at chr22:66502..72681-

>NO22G00170.1 ID=NO22G00170.1|Name=NO22G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=2541bp|location=Sequence derived from alignment at chr22:66502..72681- (Nannochloropsis oceanica)
ATGTGCACATCCACCCACAAATCACAGACAGGAAGCAAAATGGAGCAGTG
CGTTAGAATAAGAATAAAGCGGCAACGACCTGGCATGGATACAGCCGCCG
CAGTGGATTCACTATCGTCACCGCCACAATCATCCTCCTGCTCCTCGAAG
TCCCAACGGGCTTGCTTACCCCGTTGTTTGTCCTCGTCCTTCCTCCTCGT
CAGTCTTCCCTTAGCCCTCGCCTTCGTGTACCTAAGCAGCTCCTGTCCTT
CCGCAATGGCCTTCACCACCCCCTATCCTCACCAACATTCAAGAAGAAGA
GGTGGCGGCATCCCGTCCTCCCTCCCTCCCTCCCCCTCAACGTCGTATGC
CCGTGGCGGAGCCGGTGGTAGCAGTGGAAGGGGAGGAGGGACAGCAGCAG
CGACGACGGAGAGCGCGCAGAAACAGCAGCAGCTGCGCAACGACAAGGGG
GAAGGAGCAGGAGGAGGGGTTGGGGCGAGATCGAGAAGGAGAAAGGTTAC
GTCTCGGCCCGCTTCTTCGCCCGAGGAAGTTGTTTGGGATGCCATGCTGT
CCCCTTCCTCCCTCCCTTCCTCCTCCTCGAGCTCCTTCTATTCCTCTCGT
CATCACGTCCATTCTCGGCTGGACTCGTTCGGAGAGGAAGAAGACGAGGA
CGAGGACGAGGCGGGAGGGCGTGAGGAGGACGAGGAGGGAGGGCTGGAGG
AGGACGAGGAGGGCGCTGCTCTCGCTTCGTTCATGGATGAGGAGGAGGAC
GAGGAGGGAGGAGGGGAGGAAGGGACAGGGGGAGAGTTCGGAGTGGATGA
GATGCTGATGCTTCCGCTGGAGGTGGGGGAGGAAGTGGAGCAGGCCTACG
TCAAGACAGCAACAACAGCATCAACAGCATCAACAGCATCAACAGCAGAA
GCTGAGGAAGCCGCTGTGGAGGCAGAGGACGAGGCCCAAGGCAAGATGGC
CGCCACTTCGAAAGGCCCTTACTCCCGCCCGAGCAGGAACAGGAGAGGCA
AAAAGACGAGCCTTGAGAACACCCACTACATCCAGCAGCACGGGCTGGAG
TCTGTGCCTTTGTTGACGAAAAAGGAGGAGTTTGATTTGGGCTCTGAGGC
GCGCCGATGGCTGCACATCGACGAGGCGCGCAGAGAGCTCGCAGAGGCGC
TTGGAAGGCAGCCGTCAGCGCAGGAGTGGGCCTCGGTCGCGGGCCTGACC
CCAGAGGAGCTCGAGGCCGAAATGTGGCAGGGCAAGCGGGCTGTGCAGCG
CCTGGTTCGCTCCAACATCCGCCTGGTCCTCTCCATAGCTAAGAAGTACC
GGAGCGACTTTGTCGACTACTCGGACCTTATCCAGGAAGGCACTCTGGGC
TTGCTCCGTGCAGTGCAAAAATACGATCCAACCCGAGGCTTTAAATTCGG
AACATACGCCACGTGGTGGATCCAGCAGGGCATGCTCCGATGCCTCTCCC
ACGATTCCCGCGTTGTCCGTATCCCCGTCCACGTCCAGGCCCTCTACTCC
AAGTACAAGAAGCTACGGCAGAAGTTGGAGCACGAGCGCGGGGAGGAGGT
CTCGGACGAAGAGCTCGCTCCGATGCTCAAGGTCTCCGTGAAGCGCCTCC
AGCAGCACTTGGTGCTCTGCAAGCCCCAGCGCTTTTTCGAGGAGACTGTC
GGCGGCATGAACCTGAACGGGGAGTCCATGCATTTTTATGACGTTTACGG
CGACAGTCAGGGGCAAAAGGATGCGGAGGCTCTTGCGCACCACGCCTCGC
TGCAGCGCTCCGTCTCTACGGCGTTGCGGGCGTTGTCGACGGAGGAACGT
CAGTTCCTGCGGATGAAATACGGTCTCGACGACGGCAAAGCCAAGACCAC
ACGTGAGATCGCGGAATACACCCACGTGACGATCGAGTACGTTCGTCGCA
CTCAAACCAAGGCCCTCCAGCGCCTCCGATCCGCCAATACCTACCGGTTG
CTTGAAGCCTACGTCAATGGCCAGGAATGCGTGAAGGAAGACCTCTTCGG
GTCTCCCTCCCCTTCCTCCCTCAGCACCTCCAGGGGGACTCAAAACCCAA
CCAGCGCCTCTTCTCATGGCGACGTCCCTCGAGATTTCCTCAAGGGCGTC
CGCAATCGCAAGCGTAAGAGCTCCTCCCTCCGTCCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGTTTCCTTTCCCG
AGGAAGGGGGAAAGGAATGTGGGAAAGGTGTCATGATTGACCGACCCCTC
ACCGCCGCAGACGCAGCCGCAGAAGCAGCAGAAGAAAAGAGGATGATGAT
GCTCGCCTCATCCTCCCTCTCTTCCTCCCTCCTTCTCTCCTCCCCTTCCT
ACTCTCCCTACTCTCCCTCCGCGAGAAATCAGCGGCCGGCGGAGAAAGAG
AGGGTAAAAGTGGGTGTTGAGGGAGGGGCAGGGAGGGGGAAAAAGAAGAC
TTCTTCCGTCCCTTCCTCCCTTCCATCCTTGCTTAGTTTTAATGTGACGA
CGGGCGTGGGTGAAATGGCCGGGATCCTGGCAGGGTTCTAG

Synonyms

Publications