NO22G00170, NO22G00170 (gene) Nannochloropsis oceanica

Overview
NameNO22G00170
Unique NameNO22G00170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length6180
Alignment locationchr22:66502..72681 -

Link to JBrowse

Properties
Property NameValue
DescriptionRNA polymerase sigma factor SigA
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:66502..72681 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
GO:0006355regulation of transcription, DNA-templated
GO:2000142regulation of DNA-templated transcription, initiation
GO:0010468regulation of gene expression
GO:0006355regulation of transcription, DNA-templated
GO:0006352DNA-templated transcription, initiation
GO:0001123transcription initiation from bacterial-type RNA polymerase promoter
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0016987sigma factor activity
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR013325RNA_pol_sigma_r2
IPR013324RNA_pol_sigma_r3_r4
IPR007627RNA_pol_sigma70_r2
IPR007630RNA_pol_sigma70_r4
IPR000943RNA_pol_sigma70
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
[Close]
BLAST of NO22G00170 vs. NCBI_GenBank
Match: WP_017326070.1 (RNA polymerase sigma factor, RpoD/SigA family [Synechococcus sp. PCC 7336])

HSP 1 Score: 193.0 bits (489), Expect = 2.800e-45
Identity = 116/294 (39.46%), Postives = 174/294 (59.18%), Query Frame = 0 
Query:  322 GPYSRPSRNRRGKKTSLENTHYIQQHGLESVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLTPEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLGLLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYSKYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETVGGMNLNGESMHFYDVYGDSQGQKD--AEALAHHASLQRSVSTALRALSTEERQFLRMKYGLDDGK 614
            G  S PSR+   + T L    Y+Q+ G   VPLL + EE  L  + +R++ + E R +LA  L  QPS + WA    L+  EL      G RA   ++++N+RLV+S+AKKY++  ++  DLIQEGTLGL RAV+K+DPT+G++F TYA WWI+QG+ R ++  SR +R+PVH+    +K KK ++K+  E+G   + E++A  L +S  +++  LV   P+    ET  G + + E        GD    +D   E L    SL R +ST L  LS+ ER  LRM++GL+DG+
Sbjct:   32 GERSTPSRSSSRRSTDLVRL-YLQEIG--RVPLLGRDEEVALAQKVQRYMELVEQREQLASELDSQPSLEAWAERVSLSVSELRQFQRTGSRAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIEDIAKELDLSKVQVRDLLVRV-PRSVSLETKVGKDKDTE-------LGDLLEAEDMSPEELVTRESLSRDLSTLLAELSSRERDVLRMRFGLEDGR 314
[Close]
BLAST of NO22G00170 vs. NCBI_GenBank
Match: OIP71075.1 (RNA polymerase subunit sigma [Oscillatoriales cyanobacterium CG2_30_40_61])

HSP 1 Score: 190.7 bits (483), Expect = 1.400e-44
Identity = 100/286 (34.97%), Postives = 171/286 (59.79%), Query Frame = 0 
Query:  328 SRNRRGKKTSLENTHYIQQHGLESVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLTPEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLGLLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYSKYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETVGGMNLNGESMHFYDVYGDSQGQKDAEALAHHASLQRSVSTALRALSTEERQFLRMKYGLDDGK 614
            SR+ R   T    T+    H +  VPLLT+++E   G + +  +   E +  LAE LGR+PS QEW+    ++PEEL+  + QG+RA ++++ +N+RLV+SIAKKY+   +++ DLIQEGTLGL R V+K+DP RG+KF TYA WWI+Q + R ++  SR +R+P+H+    +K KK++++L  + G   +  E+A  L++   +++ +L+  +     +  VG    + +     D+  D      A+A      L++ +   L  L+ ++R+ + ++YGL+DGK
Sbjct:   14 SRSTRPVTTDTVRTYL---HEIGRVPLLTREQEITYGKQVQTMMQQLEVKNTLAEQLGREPSQQEWSEAVEISPEELQTILKQGRRAKEKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQTSRTIRLPIHITEKLNKIKKVQRELVQKLGRNATPGEIAQALELDPAQIRDYLLASRHPVSLDLRVG----DNQDTELQDLLEDH--NTSADAFVTQELLRQDLKNLLADLTAQQREVITLRYGLEDGK 290
[Close]
BLAST of NO22G00170 vs. NCBI_GenBank
Match: WP_079678992.1 (RNA polymerase sigma factor, RpoD/SigA family [Planktothrix sp. PCC 11201] >SKB12842.1 RNA polymerase sigma factor rpoD2 [Planktothrix sp. PCC 11201])

HSP 1 Score: 190.7 bits (483), Expect = 1.400e-44
Identity = 100/286 (34.97%), Postives = 171/286 (59.79%), Query Frame = 0 
Query:  328 SRNRRGKKTSLENTHYIQQHGLESVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLTPEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLGLLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYSKYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETVGGMNLNGESMHFYDVYGDSQGQKDAEALAHHASLQRSVSTALRALSTEERQFLRMKYGLDDGK 614
            SR+ R   T    T+    H +  VPLLT+++E   G + +  +   E +  LAE LGR+PS QEW+    ++PEEL+  + +G+RA Q+++ +N+RLV+SIAKKY+   +++ DLIQEGTLGL R V+K+DP RG+KF TYA WWI+Q + R ++  SR +R+P+H+    +K KK++++L  + G   +  E+A  L++   +++ +L+  +     +  VG    + +     D+  D      A+A      L++ +   L  L+ ++R+ + ++YGL+DGK
Sbjct:   14 SRSTRPATTDAVRTYL---HEIGRVPLLTREQEITYGKQVQTMMQQLEVKNTLAEQLGREPSQQEWSEALEMSPEELQTLLQKGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQTSRTIRLPIHITEKLNKIKKVQRELVQKLGRNATPGEIAQALELDPAQIRDYLLASRHPVSLDLRVG----DNQDTELQDLLEDH--NTSADAFVTQELLRQDLKNLLADLTAQQREVITLRYGLEDGK 290
[Close]
BLAST of NO22G00170 vs. NCBI_GenBank
Match: WP_015164043.1 (RNA polymerase sigma factor, RpoD/SigA family [Pseudanabaena sp. PCC 7367] >AFY69069.1 RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp. PCC 7367])

HSP 1 Score: 189.5 bits (480), Expect = 3.100e-44
Identity = 100/267 (37.45%), Postives = 162/267 (60.67%), Query Frame = 0 
Query:  347 HGLESVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLTPEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLGLLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYSKYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETVGGMNLNGESMHFYDVYGDSQGQKDAEALAHHASLQRSVSTALRALSTEERQFLRMKYGLDDGK 614
            H +  +PLLT +EE   G   ++ + + E   +LAE L RQP+  EWA  AGL  EELE  +  G R+ ++++ +N+RLV+S+AKKY+   ++  DL+QEGTLGL RAV K+DPT+GFKF TYA WWI+Q + R ++  +R +R+PVH+    +K KK +++L    G   +  E+A  LK+  +++++ L + +     +  +G  N + E     +  GDS      E+ A   SL+  ++  L  L+ ++R+ + M+YGL+DGK
Sbjct:   44 HEIGKIPLLTSEEEIIFGKRVQQLMRLSELYEDLAEQLDRQPTQAEWADKAGLNIEELEQIVRDGTRSKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPVHITEKLNKIKKAQRQLSQSLGRVATAAEIADALKLKPEQVREFLSMARQPVSLDLRIGD-NQDTELAELLEDEGDS-----PESFALSESLRDDIAGLLLDLTPKQREVMIMRYGLEDGK 304
[Close]
BLAST of NO22G00170 vs. NCBI_GenBank
Match: WP_071516167.1 (RNA polymerase sigma factor, RpoD/SigA family [Geitlerinema sp. PCC 9228])

HSP 1 Score: 189.5 bits (480), Expect = 3.100e-44
Identity = 96/274 (35.04%), Postives = 171/274 (62.41%), Query Frame = 0 
Query:  343 YIQQHGLESVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLTPEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLGLLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYSKYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETVGGMNLNGESMHFYDVYGDSQGQKDAEALAHHASLQRSVSTALRALSTEERQFLRMKYGLDDGKAKT 617
            Y+++ G   VPLLT +EE   G + +++  + E ++EL E+ GR+P+  EWA+ A L+ E+L+ ++ +G+ A +++V +N+RLV+S+AKKY    VD  DLIQEGT+G+ R V+K+DPT+G++F TYA WWI+Q + R ++   R +R+P+H+    +K KK ++ L    G   +  ELA  L +S K+++++L   +     E+ VG    + +     D+  D+      E  A  +SL+  ++  ++ L+ ++++ L +++GL+DGKA T
Sbjct:   14 YLREIG--RVPLLTHEEEIYYGKQVQKFNQLQEVKKELTESQGREPTMSEWAAAADLSVEQLQKQLARGEHAKRKMVEANLRLVVSVAKKYIKRNVDLMDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRNLSQNLGRAATVAELAEELDLSPKQIREYLERARQPLSLEQRVG----DNQDTELGDLLEDT--GPSPEDFATQSSLKADLTELMQDLTPQQKEVLALRFGLEDGKALT 279
[Close]
BLAST of NO22G00170 vs. NCBI_GenBank
Match: WP_106869132.1 (MULTISPECIES: RNA polymerase sigma factor, RpoD/SigA family [unclassified Cyanobacteria (miscellaneous)] >PSN16678.1 RNA polymerase sigma factor, RpoD/SigA family [filamentous cyanobacterium CCT1] >PSN78673.1 RNA polymerase sigma factor, RpoD/SigA family [filamentous cyanobacterium CCP4])

HSP 1 Score: 187.6 bits (475), Expect = 1.200e-43
Identity = 93/266 (34.96%), Postives = 164/266 (61.65%), Query Frame = 0 
Query:  347 HGLESVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLTPEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLGLLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYSKYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETVGGMNLNGESMHFYDVYGDSQGQKDAEALAHHASLQRSVSTALRALSTEERQFLRMKYGLDDG 613
            H +  VPLLT +EE   G + + ++ + E +  L E+L  +PS  EWA  AGL+ E+LE  + QG+RA ++++ +N+RLV++IAKKY+   +++ DLIQEGTLGL R V+K+DPT+G+KF TYA WWI+Q + R ++  +R +R+P+H+    +K K+++++L  + G   +  E+   L++  K++++ LVL +     +  +G  N + E     +  G S      E      SL++ +   L  L+ ++++ + ++YGL+DG
Sbjct:   25 HEIGRVPLLTHEEEIIFGKQVQSYMALLEQKESLTESLDHEPSQTEWAEAAGLSEEQLEQIVRQGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELSQQLGRSPNANEIGEALELEPKQIREFLVLARQPISLDVRIGD-NQDTELQELLEDDGIS-----PETFTAQESLKQDIRNLLSELTPQQKEVITLRYGLEDG 284
[Close]
BLAST of NO22G00170 vs. NCBI_GenBank
Match: WP_015224327.1 (RNA polymerase sigma factor, RpoD/SigA family [Halothece sp. PCC 7418] >AFZ42449.1 RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC 7418])

HSP 1 Score: 186.8 bits (473), Expect = 2.000e-43
Identity = 90/266 (33.83%), Postives = 165/266 (62.03%), Query Frame = 0 
Query:  347 HGLESVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLTPEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLGLLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYSKYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETVGGMNLNGESMHFYDVYGDSQGQKDAEALAHHASLQRSVSTALRALSTEERQFLRMKYGLDDG 613
            H +  VPLLT ++E  LG + ++ + + E + EL E LGR+ + +EW   AG++ EEL+  M +G RA ++++ +N+RLV++IAKKY+   +++ DLIQEGTLGL R V+K+DPTRG+KF TYA WWI+Q + R ++  +R +R+P+H+    +K KK++++L  + G   +  E+A  L +   +++++L + +     +  VG    + +     ++  D   +   E      S+++ + + L  L+ ++R+ L +++GL+DG
Sbjct:   25 HEIGRVPLLTHEQEIILGKQVQKMMKLIEQKEELEEELGREATDEEWTQKAGISQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELAQKLGRNATPTEIAEELGLEPSQIREYLSIARQPISLDVRVG----DNQDTELSELLEDD--ENSPETYLTQESMRQDIDSMLSELTPQQREVLSLRFGLEDG 284
[Close]
BLAST of NO22G00170 vs. NCBI_GenBank
Match: WP_042153116.1 (RNA polymerase sigma factor, RpoD/SigA family [Planktothrix agardhii] >KEI66435.1 HrdB [Planktothrix agardhii NIVA-CYA 126/8] >CUM61522.1 RNA polymerase sigma factor rpoD2 [Planktothrix agardhii] >BBD55414.1 group 2 RNA polymerase sigma factor SigB [Planktothrix agardhii NIES-204])

HSP 1 Score: 186.8 bits (473), Expect = 2.000e-43
Identity = 99/286 (34.62%), Postives = 170/286 (59.44%), Query Frame = 0 
Query:  328 SRNRRGKKTSLENTHYIQQHGLESVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLTPEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLGLLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYSKYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETVGGMNLNGESMHFYDVYGDSQGQKDAEALAHHASLQRSVSTALRALSTEERQFLRMKYGLDDGK 614
            SR+ R   T    T+    H +  VPLLT+++E   G + +  +   EA+  LAE LGR+PS QEW+    ++ +EL+  + QG+RA  +++ +N+RLV+SIAKKY+   +++ DLIQEGTLGL R V+K+DP RG+KF TYA WWI+Q + R ++  SR +R+P+H+    +K KK++++L  + G   +  E+A  L++   +++ +L+  +     +  VG    + +     D+  D      A+A      L++ +   L  L+ ++R+ + ++YGL+DGK
Sbjct:   14 SRSTRPATTDAVRTYL---HEIGRVPLLTREQEITYGKQVQTMMQQLEAKNTLAEQLGREPSQQEWSDAVEMSQDELQTILKQGRRAKGKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQTSRTIRLPIHITEKLNKIKKVQRELVQKLGRNATPGEIAQALELDPAQIRDYLLASRHPVSLDLRVG----DNQDTELQDLLEDH--NTSADAFVTQELLRQDLKNLLADLTAQQREVITLRYGLEDGK 290
[Close]
BLAST of NO22G00170 vs. NCBI_GenBank
Match: WP_036831795.1 (MULTISPECIES: RNA polymerase sigma factor, RpoD/SigA family [Planktothrix])

HSP 1 Score: 186.8 bits (473), Expect = 2.000e-43
Identity = 99/286 (34.62%), Postives = 170/286 (59.44%), Query Frame = 0 
Query:  328 SRNRRGKKTSLENTHYIQQHGLESVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLTPEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLGLLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYSKYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETVGGMNLNGESMHFYDVYGDSQGQKDAEALAHHASLQRSVSTALRALSTEERQFLRMKYGLDDGK 614
            SR+ R   T    T+    H +  VPLLT+++E   G + +  +   EA+  LAE LGR+PS QEW+    ++ +EL+  + QG+RA  +++ +N+RLV+SIAKKY+   +++ DLIQEGTLGL R V+K+DP RG+KF TYA WWI+Q + R ++  SR +R+P+H+    +K KK++++L  + G   +  E+A  L++   +++ +L+  +     +  VG    + +     D+  D      A+A      L++ +   L  L+ ++R+ + ++YGL+DGK
Sbjct:   14 SRSTRPATTDAVRTYL---HEIGRVPLLTREQEITYGKQVQTMMQQLEAKNTLAEQLGREPSQQEWSDAVEMSQDELQTILKQGRRAKGKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQTSRTIRLPIHITEKLNKIKKVQRELVQKLGRNATPGEIAQALELDPAQIRDYLLASRHPVSLDLRVG----DNQDTELQDLLEDH--NTSADAFVTQELLRQDLKNLLADLTAQQREVITLRYGLEDGK 290
[Close]
BLAST of NO22G00170 vs. NCBI_GenBank
Match: WP_036842253.1 (MULTISPECIES: RNA polymerase sigma factor, RpoD/SigA family [Planktothrix] >CUR27993.1 RNA polymerase sigma factor rpoD2 [Planktothrix rubescens])

HSP 1 Score: 186.8 bits (473), Expect = 2.000e-43
Identity = 99/286 (34.62%), Postives = 170/286 (59.44%), Query Frame = 0 
Query:  328 SRNRRGKKTSLENTHYIQQHGLESVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLTPEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLGLLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYSKYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETVGGMNLNGESMHFYDVYGDSQGQKDAEALAHHASLQRSVSTALRALSTEERQFLRMKYGLDDGK 614
            SR+ R   T    T+    H +  VPLLT+++E   G + +  +   EA+  LAE LGR+PS QEW+    ++ +EL+  + QG+RA  +++ +N+RLV+SIAKKY+   +++ DLIQEGTLGL R V+K+DP RG+KF TYA WWI+Q + R ++  SR +R+P+H+    +K KK++++L  + G   +  E+A  L++   +++ +L+  +     +  VG    + +     D+  D      A+A      L++ +   L  L+ ++R+ + ++YGL+DGK
Sbjct:   14 SRSTRPATTDAVRTYL---HEIGRVPLLTREQEITYGKQVQTMMQQLEAKNTLAEQLGREPSQQEWSDAVEMSQDELQTILKQGRRAKGKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQTSRTIRLPIHITEKLNKIKKVQRELVQKLGRNATPGEIAQALELDPAQIRDYLLASRHPVSLDLRVG----DNQDTELQDLLEDH--NTSADAFVTQELLRQDLKNLLADLTAQQREVITLRYGLEDGK 290
The following BLAST results are available for this feature:
BLAST of NO22G00170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_017326070.12.800e-4539.46RNA polymerase sigma factor, RpoD/SigA family [Syn... [more]
OIP71075.11.400e-4434.97RNA polymerase subunit sigma [Oscillatoriales cyan... [more]
WP_079678992.11.400e-4434.97RNA polymerase sigma factor, RpoD/SigA family [Pla... [more]
WP_015164043.13.100e-4437.45RNA polymerase sigma factor, RpoD/SigA family [Pse... [more]
WP_071516167.13.100e-4435.04RNA polymerase sigma factor, RpoD/SigA family [Gei... [more]
WP_106869132.11.200e-4334.96MULTISPECIES: RNA polymerase sigma factor, RpoD/Si... [more]
WP_015224327.12.000e-4333.83RNA polymerase sigma factor, RpoD/SigA family [Hal... [more]
WP_042153116.12.000e-4334.62RNA polymerase sigma factor, RpoD/SigA family [Pla... [more]
WP_036831795.12.000e-4334.62MULTISPECIES: RNA polymerase sigma factor, RpoD/Si... [more]
WP_036842253.12.000e-4334.62MULTISPECIES: RNA polymerase sigma factor, RpoD/Si... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00170.2NO22G00170.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO22G00170.1NO22G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|99339gene_7012Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00170.2NO22G00170.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO22G00170.1NO22G00170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00170 ID=NO22G00170|Name=NO22G00170|organism=Nannochloropsis oceanica|type=gene|length=6180bp
ACGACAACAGAGGGTCCGTATAAAATGCCACATCTCGAAAGCTAGCTGAG
CACAATTTTAAAACTATGAGGCACAGCAGAGACACACGACGCAATATGTT
GGTGCCCCTGAACGATGCGATGGGGTGTGCGATACGCGAGTGAGGTGAAG
AACAGAGGTCGTTCACGGGTGTGGCCGAAAGTCTCATGCTTGCCCGCCCC
TCGTAAGTGAACCCCCCTCCTTTTTTGGAAGCACCACAATTTCATACACT
GCGCCGTGCCATGCACGCTTAGACTGCGGCTTTTGGGTATGCCGAACCTC
TACTCGTATCGCGCTCCATGCAGGACATCGTTTTGACACATCATTATTAA
AAATTCTTGGTTTTTGTGGCCTAGTTGTCGTTGAGGTGCAAATCAATCTT
GTCTTCGCCTTCACAGGAACAACGGGAAGGGGCACTTGCTTCGACACCTC
CAGGCGGAGGTAGGAAGCATGACGAGGACAAGGAAATGCTAGACCTGAAT
ACTCTTTTTGCGCTTGTTTTTGGTGTTCATTCTCATCCTCCCTCCATCGC
ATCGATGGATCGCAGTGTCCTCGTCACGTTGTCGTGCGGCGAGTAACAGG
ACAAGAAGCAGCAGCGAGTTCACTACATATGACCTGCCTTGCATTGAAGC
GAAAGCCCTGCATCTCGACCGACCTCGAATGACTCATCTTCCCCAAAAAC
GGAGGGGCGCGCGGTGATGGTGGAGAAGGGGACGAGAATGAATTTTGCAT
AGTGGTGCATGCGTGGCAGACCTCGTTTTGTTTGTGGGTCACTCTCCCGA
GGCAATGCGGCTTCTCCGGTCTGACATGGCGTCGACTCCCATGTATCCTA
CCGCCTCTTTTACCACCCTACACCTTCCACAAAATTGCACGAAGCGCCTG
AAGGCCGTCAGAAAAGGACATGATCGATGCGATGCAGCTAGTCACTTCTT
CCCCTCTTTCCTCTTTCTTGACCTTATTCCCCCTCCCTCCACCCCTCCCT
CCTTCCCTCCCTACCCATGTGCACATCCACCCACAAATCACAGACAGGAA
GCAAAATGGAGCAGTGCGTTAGAATAAGAATAAAGCGGCAACGACCTGGC
ATGGATACAGCCGCCGCAGTGGATTCACTATCGTCACCGCCACAATCATC
CTCCTGCTCCTCGAAGTCCCAACGGGCTTGCTTACCCCGTTGTTTGTCCT
CGTCCTTCCTCCTCGTCAGTCTTCCCTTAGCCCTCGCCTTCGTGTACCTA
AGCAGCTCCTGTCCTTCCGCAATGGCCTTCACCACCCCCTATCCTCACCA
ACATTCAAGAAGAAGAGGTGGCGGCATCCCGTCCTCCCTCCCTCCCTCCC
CCTCAACGTCGTATGCCCGTGGCGGAGCCGGTGGTAGCAGTGGAAGGGGA
GGAGGGACAGCAGCAGCGACGACGGAGAGCGCGCAGAAACAGCAGCAGCT
GCGCAACGACAAGGGGGAAGGAGCAGGAGGAGGGGTTGGGGCGAGATCGA
GAAGGAGAAAGGTTACGTCTCGgtacgtctgccttcccttcacctccctc
cttccctcccgtcctcccgccctccctccttccctccctctctctgtggc
tttctcttctatcctttgactcatttattctttcctttctccctccctat
ccctccctcccttcctccctctccctccttccctcttcaactatcgcagG
CCCGCTTCTTCGCCCGAGGAAGTTGTTTGGGATGCCATGCTGTCCCCTTC
CTCCCTCCCTTCCTCCTCCTCGAGCTCCTTCTATTCCTCTCGTCATCACG
TCCATTCTCGGCTGGACTCGTTCGGAGAGGAAGAAGACGAGGACGAGGAC
GAGGCGGGAGGGCGTGAGGAGGACGAGGAGGGAGGGCTGGAGGAGGACGA
GGAGGGCGCTGCTCTCGCTTCGTTCATGGATGAGGAGGAGGACGAGGAGG
GAGGAGGGGAGGAAGGGACAGGGGGAGAGTTCGGAGTGGATGAGATGCTG
ATGCTTCCGCTGGAGGTGGGGGAGGAAGTGGAGCAGgtacgtcgggaaga
agggagacaagaagggagggagggagggaaagaaggagagatcatataca
caacgcctccctctcacctgcgcatcacctcctttgaacgacagGCCTAC
GTCAAGACAGCAACAACAGCATCAACAGCATCAACAGCATCAACAGCAGA
AGCTGAGGAAGCCGCTGTGGAGGCAGAGGACGAGGCCCAAGGCAAGgtat
gtagatgccacagaggctgtgagaggctgtttgtcgtccctttggctgga
gaggctgcttcttactttcttcaatccagacgccgtttttcgtctttctg
tgtagatgtcgtttctcgtagatgctgtttgtcgtccctcccttcccgac
cttttttccttgtcccctgccagagatatcattttctgtgttgtacgctt
gcccttatcgcctttattccccccctcccttatcgccattattcccccct
ccctccttccatccctcctttccttaagtcatacagcacgcttatcctcc
cctccctcctcccctccctccctcagATGGCCGCCACTTCGAAAGGCCCT
TACTCCCGCCCGAGCAGGAACAGGAGAGGCAAAAAGACGAGCCTTGAGAA
CACCCACTACATCCAGCAGCACGGGgtaagatgagagagggagacaggga
gggagggagggagggagggaaggagggagcgagggagcgagggagcgagg
catggaggaggatggagggaggaagggagagggagaggacgagcgaggga
tggagagggagcgagggagcgagggagcgaggggatgtagcgagggaagg
agtcacagggtaaatttcgctgtacgcatgcagacctcttcctcaccttt
ccgctccctccctccctccctccctccctccctgcagCTGGAGTCTGTGC
CTTTGTTGACGAAAAAGGAGGAGTTTGATTTGGGCTCTGAGGCGCGCCGA
TGGCTGCACATCGACGAGGCGCGCAGAGAGCTCGCAGAGGCGCTTGGAAG
GCAGCCGTCAGCGCAGgtagggacagagggagggagggagagggggagga
aaggggagggggaggaaaggggagggggggggggtaggatgcttccataa
tccccatttgagtcactcggacacccatctcacgctaccctccctccctc
cctccctcccttcctccctcccttcctccctccgtcctttagGAGTGGGC
CTCGGTCGCGGGCCTGACCCCAGAGGAGCTCGAGGCCGAAATGTGGCAGG
GCAAGCGGGCTGTGCAGCGCCTGgtacgcccctccctccctccctccctt
cctccctcccttcctccctttctccctccctccctcccttccctcctctc
ccctttcctccctccctccctccctccctccctccctctttcctctcctt
tcctctcctttcccctcctttgtcacaagcccatccattcattcctacct
cccctcggcttcctccctcccttcctcccccccctccctcacagGTTCGC
TCCAACATCCGCCTGGTCCTCTCCATAGCTAAGAAGTACCGGAGCGACTT
TGTCGACTACTCGGACCTTATCCAGgcacgtccctccctccctccctccc
taaccctccctccctccctccctaaccctccctccctaaccctccctccc
tccctcccacccacccttccctcacagGAAGGCACTCTGGGCTTGCTCCG
TGCAGTGCAAAAATACGATCCAACCCGAGGCTTTAAATTCGGAACATACG
CCACGTGGTGGATCCAGCAGGgtgcgccctccctccctccctccctccct
ccctcccttcctccctccctcgtcctccctgccttgcactagcgtcgaat
gggcgggctccacctcgcctcatcctccctccctccctccctccctccct
ccctccctccctcagGCATGCTCCGATGCCTCTCCCACGATTCCCGCGTT
GTCCGTATCCCCGTCCACGTCCAGgtacctcccctcccctccctccctcc
ctcccttctggtccatgctcacccccaccttcccgccctccctcttacag
GCCCTCTACTCCAAGTACAAGAAGCTACGGCAGAAGTTGGAGCACGAGCG
CGGGGAGGAGGTCTCGGACGAAGAGCTCGCTCCGATGCTCAAGgtacgtc
ctccctccctccctccctccctcccttcctcccttcctcattcccccctc
ccaaaaacctcacccctccctccctccctccctccctccctccctccctc
cctccctcttccagGTCTCCGTGAAGCGCCTCCAGCAGCACTTGGTGCTC
TGCAAGCCCCAGCGCTTTTTCGAGGAGACTGTCGGCGgtacgttaatccc
tccctccctccctccctccctccctgccaagtcgacaagcccgtccgatg
gacactcatccccctccctttccccctccctcccttactccctccctccc
ttctgggcagGCATGAACCTGAACGGGGAGTCCATGCATTTTTATGACGT
TTACGGCGACAGTCAGGGGCAAAAGGATGCGGAGGCTCTTGCGCACCACG
CCTCGCTGCAGgtagggagggagggaggggcggaggaagggagggaaaga
ataagggacgagggagggaggaaatgttagagaaagggaggcggggggag
gaggagggacggacggaaggagggacggaaggatcaagaaagcgtcctta
ggaactgtttctcacccaacactccctccctccctccctccctccctcct
tgcagCGCTCCGTCTCTACGGCGTTGCGGGCGTTGTCGACGGAGGAACGT
CAGTTCCTGCGGATGAAATACGGTCTCGACGACGGCAAAGCCAAGACCAC
ACGgtagggagcgagggagcgagggagggagggagggagggttaaaagca
gtcctcttcatgtacacgtgctgtggtcgctcggtcgttcgaagtcgtcc
atcctcttcccgccccctcccatttcctccctcccttctgtgcagTGAGA
TCGCGGAATACACCCACGTGACGATCGAGTACGTTCGTCGCACTCAAACC
AAGGCCCTCCAGCGCCTCCGATCCGCCAATACCTACCGGTTGCTTGAAGC
CTACGTCAATGGCCAGgtacccccctccctccctcccttcctccctccct
ccctcccgttctcctgccctttcatacatgcacgcgcatgtttctgctct
tcatctatctgacccgcgcgcccctccttccctccctccgtccctccctt
ccagGAATGCGTGAAGGAAGACCTCTTCGGGTCTCCCTCCCCTTCCTCCC
TCAGCACCTCCAGGGGGACTCAAAACCCAACCAGCGCCTCTTCTCATGgt
aagcctttttttcctttctttttctttttctttttctttttctttttctt
tttctttttcttttttttcctttttcctttttcttttttcctttttctta
ttcttttcttttcccttctcgtcttttcttttttatagatttttttttcc
ttttctcttccccccccttccatccccttcccgccctcctttcatcctca
caagccgcctctatcgctaaccccacctgccctccgttcctccctccctc
cctcagGCGACGTCCCTCGAGATTTCCTCAAGGGCGTCCGCAATCGCAAG
CGTAAGAGCTCCTCCCTCCGTCCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCGTTTCCTTTCCCGAGGAAGGGGGAA
AGGAATGTGGGAAAGGTGTCATGATTGACCGACCCCTCACCGCCGCAGAC
GCAGCCGCAGAAGCAGCAGAAGAAAAGAGGATGATGATGCTCGCCTCATC
CTCCCTCTCTTCCTCCCTCCTTCTCTCCTCCCCTTCCTACTCTCCCTACT
CTCCCTCCGCGAGAAATCAGCGGCCGGCGGAGAAAGAGAGGGTAAAAGTG
GGTGTTGAGGGAGGGGCAGGGAGGGGGAAAAAGAAGACTTCTTCCGTCCC
TTCCTCCCTTCCATCCTTGCTTAGTTTTAATGTGACGACGGGCGTGGGTG
AAATGGCCGGGATCCTGGCAGGGTTCTAGGGAGGGAAGGAGGGAGGGAAG
GAGGGAGGGAAGGAGGGAGGGAGGGGAGGG
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protein sequence of NO22G00170.2

>NO22G00170.2-protein ID=NO22G00170.2-protein|Name=NO22G00170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp
MCTSTHKSQTGSKMEQCVRIRIKRQRPGMDTAAAVDSLSSPPQSSSCSSK
SQRACLPRCLSSSFLLVSLPLALAFVYLSSSCPSAMAFTTPYPHQHSRRR
GGGIPSSLPPSPSTSYARGGAGGSSGRGGGTAAATTESAQKQQQLRNDKG
EGAGGGVGARSRRRKVTSRPASSPEEVVWDAMLSPSSLPSSSSSSFYSSR
HHVHSRLDSFGEEEDEDEDEAGGREEDEEGGLEEDEEGAALASFMDEEED
EEGGGEEGTGGEFGVDEMLMLPLEVGEEVEQAYVKTATTASTASTASTAE
AEEAAVEAEDEAQGKMAATSKGPYSRPSRNRRGKKTSLENTHYIQQHGLE
SVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLT
PEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLG
LLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYS
KYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETV
GGMNLNGESMHFYDVYGDSQGQKDAEALAHHASLQRSVSTALRALSTEER
QFLRMKYGLDDGKAKTTR*
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protein sequence of NO22G00170.1

>NO22G00170.1-protein ID=NO22G00170.1-protein|Name=NO22G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=847bp
MCTSTHKSQTGSKMEQCVRIRIKRQRPGMDTAAAVDSLSSPPQSSSCSSK
SQRACLPRCLSSSFLLVSLPLALAFVYLSSSCPSAMAFTTPYPHQHSRRR
GGGIPSSLPPSPSTSYARGGAGGSSGRGGGTAAATTESAQKQQQLRNDKG
EGAGGGVGARSRRRKVTSRPASSPEEVVWDAMLSPSSLPSSSSSSFYSSR
HHVHSRLDSFGEEEDEDEDEAGGREEDEEGGLEEDEEGAALASFMDEEED
EEGGGEEGTGGEFGVDEMLMLPLEVGEEVEQAYVKTATTASTASTASTAE
AEEAAVEAEDEAQGKMAATSKGPYSRPSRNRRGKKTSLENTHYIQQHGLE
SVPLLTKKEEFDLGSEARRWLHIDEARRELAEALGRQPSAQEWASVAGLT
PEELEAEMWQGKRAVQRLVRSNIRLVLSIAKKYRSDFVDYSDLIQEGTLG
LLRAVQKYDPTRGFKFGTYATWWIQQGMLRCLSHDSRVVRIPVHVQALYS
KYKKLRQKLEHERGEEVSDEELAPMLKVSVKRLQQHLVLCKPQRFFEETV
GGMNLNGESMHFYDVYGDSQGQKDAEALAHHASLQRSVSTALRALSTEER
QFLRMKYGLDDGKAKTTREIAEYTHVTIEYVRRTQTKALQRLRSANTYRL
LEAYVNGQECVKEDLFGSPSPSSLSTSRGTQNPTSASSHGDVPRDFLKGV
RNRKRKSSSLRPSSSSSSSSSSSSSSSSSVSFPEEGGKECGKGVMIDRPL
TAADAAAEAAEEKRMMMLASSSLSSSLLLSSPSYSPYSPSARNQRPAEKE
RVKVGVEGGAGRGKKKTSSVPSSLPSLLSFNVTTGVGEMAGILAGF*
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