NO22G00150.1, NO22G00150.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G00150.1
Unique Name	NO22G00150.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2563
Alignment location	chr22:60728..63602 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:60728..63602 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO22G00150.1 vs.

BLAST of NO22G00150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G00150	NO22G00150	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00150.1	NO22G00150.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G00150.1.cds1	NO22G00150.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00150.1.cds2	NO22G00150.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00150.1.cds3	NO22G00150.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G00150.1.cds4	NO22G00150.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:60728..63602+
coding sequence from alignment at chr22:60728..63602+

mRNA sequence

>NO22G00150.1 ID=NO22G00150.1|Name=NO22G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2563bp
CACGTCCTAATCCCCTCCACTTGCTTGCAATTAAAGCACTTCAATGTCAA
CATCGCTGAGCTATCCAAACAGCATACTTGCGTTAACCTTTGTGCTTTGT
ATGGCTTTACCTGCTTATGGCTTGCGCAAAGCCTCGCACTCTCACATTCA
AGTTCATGATCTATCTCCCAATTTTACGTTCCATTCTCTGTTCGGTCCTC
CTCCTGTCCCCGACCCGGGCACATAGATAGTTTGCCCGTCACGAAATAGA
CCATTCATTCACGTCTGTGCTAGACATATGTGTGCGCTTTCTTCTACTGG
CGCCATCAATGCACATCTTCCCCTCTACTTTTTCAACCTTCTCAATCCAT
CACTCCGCCTGCCCTGCCGTCCTTTCTCTTCACTCCCTCCTCCTCAACCA
CATACAGACACAGACGCATCCCTAGCGCTGACCATACTCCACCCCCTACC
GCAAATCATGCCCTCCTTTTCACCCATCACCTTTGTCGACCTCCCCAAAT
ACGGTATCTCTTACGAGACCAAGTCTCAGAAGCGATACGTTGCAATGACT
TACTCACCCGACGCTGAGGATCCCAGCACCACCCTCAAGCCGCGTGGCCA
CGGCTTTTTCCCGCCTGGCAGTAAGGTGGGTTTCTATGTTGAGCGGAAAA
CGGGCATGCGTATTTCTGATGAAATGCAGCATCAACTCATGGCCAACGAG
AAGAAGGAACGCCGCAACCCCTTCTACGCCCCTCCTACAACCCCTTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCAATCGTCACCCTAAGTCTTGTCCCTCCTCCGACGACAGCTACC
ACAACGGCCAAACGAAAGCTGCCCTCCCCTTCCTCCCGTCCTTCCTCCCT
CCCTCCCCTTCCCATAAACAAGCACAAAAAGTCTCTTGCTCCTCCTGCCC
TTCTCTCGCTCCTCCCAGTGAGAACGAAAGCTTCTCACCCTCCCTCCTTC
CCGTCCTCCTTTCCTCCCGTCCGTGCCCGAGACGAGGAAGGAAGAGTGAT
GAGGCGTTCGGGAAGACAGGTGGGGAAAGTGCTGATGGAGGAGGGGAGGG
AAGGGGAAAGGGAAGGAAGGAAGGGGAAGAGAGGAAGATATGCGGAGATG
GATAGTGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGAAGATGGG
TAGCAGGAAGAGGAAGGGGAAAAAGGAGAAAAACAAGGCGAGGAGGGGAA
ACATTGAGCGAAGAAGGTTGGTCGGGGAGAAAAAAAAAGATCTAGAAATA
TGGTGTTTCAATGACAAGGACCGGGAAGAAGAGGAGAGGACAACGCAGGG
CGAGGACGAGGAGGAGGAAGGGAAGGAGGAGGAGGAGGAGGAGGAGGAGT
TTCCATTGCTGTACGAATACCTGAGTCATAAGCGCCAGAGGCTCTTGAAG
TGGATGCCCTACTTCGTCTACCCCCGTCCCCCTGCTCCCCCTCCCCCTCC
ATCTCTTCCCAAGCCAACAACATCATCATCATCAGCAGCAGCAGCAGCAG
CCGCGCATGCAGACGGAGGGAGGGGTGGACGGCTCGAACGACGCAATCGC
CGCCTCCGTCAGAAATCGGGAGAGGGAGGGAGGGAGGAAGGGATGGTGAC
GATTGTACAGCAACAGCAGCAGGAGCAAATGCTACGGCAGCAGGAGGAGG
AGCAGCAGGAGCAGGAGAAGCAGAAGCAGGAGCAGCAACAGCAGCAGCGG
GAACCGGAGCCGCAGAGGCATGGATGGAGGAAGGGGGAGGAGAGGTGGGT
GGAGGAGGTGGAAGAGGAGAAGGGGGAAGGGGGGGAGGAGGAGTGGGGGG
AGGGGGAGGGGGAGGATGACGAGGAGAGTGTCCTGACTGTCAGCAGTATA
GGGGAGGAAGGGGAGGAGGGAACGGAAGTGCAACAGCAGCATGTTGGGAA
GGGAGGGAGTGAGGGAGGGAAGAAAGAGGCGGAGGATGACAAGGAGAAGG
AGGCAAAGCACCTGGTTGAGCAGGAAGAGGGCCAGCATCAAGTGCGGGAG
CAGCAGCATTTTGAGGGGGGAGGAGGGAAGGGAGGAGATGAGGAGACGAA
AAACAATAAGGAGGAAGGAAGACAACATCAAGTGCAGGAGGAGGAAGAGG
GCGGGGGAAGGGAGAGGGAGGGACCAGGAGGACGGCAGGCGGAATCGAAG
GACGGAGAATCAGAGGAGGGGAAAGAGGAAGAGGAAGAGCAAACTAGGAA
GTGCGAGGACGAGGATAGGGTGGATACGGTCTTTCTCGAAGCTATGTCAG
GCAAGGAGAAAGGAGGAGAGAAAGAGAGGGAAACGGAGGAGGAGGGAGAG
GGAGGGAGGGAGGATGGGAAGGAGAAAGAGGCGAGAGTGGAGGAGGGGGG
ACAAGCGGAGGGGCTTAAGGATGAAATGGATGGCCTGGCCGAGTTGTTGC
AAGCAGGAACACTGATGGATGTGGACGAGGGAGGAGAGGAGGAGATGGTC
GAGGGGGAGGAGGGGGTTGAAGCCATGCTGCATGATGATGGGGCCTTTGC
GTTCAGGACATGA

protein sequence of NO22G00150.1

>NO22G00150.1-protein ID=NO22G00150.1-protein|Name=NO22G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=762bp
MCALSSTGAINAHLPLYFFNLLNPSLRLPCRPFSSLPPPQPHTDTDASLA
LTILHPLPQIMPSFSPITFVDLPKYGISYETKSQKRYVAMTYSPDAEDPS
TTLKPRGHGFFPPGSKVGFYVERKTGMRISDEMQHQLMANEKKERRNPFY
APPTTPSSSSSSSSSSSSSSSSSSSSSIVTLSLVPPPTTATTTAKRKLPS
PSSRPSSLPPLPINKHKKSLAPPALLSLLPVRTKASHPPSFPSSFPPVRA
RDEEGRVMRRSGRQVGKVLMEEGREGEREGRKGKRGRYAEMDSEEEEEEE
EEEEEKMGSRKRKGKKEKNKARRGNIERRRLVGEKKKDLEIWCFNDKDRE
EEERTTQGEDEEEEGKEEEEEEEEFPLLYEYLSHKRQRLLKWMPYFVYPR
PPAPPPPPSLPKPTTSSSSAAAAAAAHADGGRGGRLERRNRRLRQKSGEG
GREEGMVTIVQQQQQEQMLRQQEEEQQEQEKQKQEQQQQQREPEPQRHGW
RKGEERWVEEVEEEKGEGGEEEWGEGEGEDDEESVLTVSSIGEEGEEGTE
VQQQHVGKGGSEGGKKEAEDDKEKEAKHLVEQEEGQHQVREQQHFEGGGG
KGGDEETKNNKEEGRQHQVQEEEEGGGREREGPGGRQAESKDGESEEGKE
EEEEQTRKCEDEDRVDTVFLEAMSGKEKGGEKERETEEEGEGGREDGKEK
EARVEEGGQAEGLKDEMDGLAELLQAGTLMDVDEGGEEEMVEGEEGVEAM
LHDDGAFAFRT*

mRNA from alignment at chr22:60728..63602+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G00150.1 ID=NO22G00150.1|Name=NO22G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2875bp|location=Sequence derived from alignment at chr22:60728..63602+ (Nannochloropsis oceanica)
CACGTCCTAATCCCCTCCACTTGCTTGCAATTAAAGCACTTCAATGTCAA
CATCGCTGAGCTATCCAAACAGCATACTTGCGTTAACCTTTGTGCTTTGT
ATGGCTTTACCTGCTTATGGCTTGCGCAAAGCCTCGCACTCTCACATTCA
AGTTCATGATCTATCTCCCAATTTTACGTTCCATTCTCTGTTCGGTCCTC
CTCCTGTCCCCGACCCGGGCACATAGATAGTTTGCCCGTCACGAAATAGA
CCATTCATTCACGTCTGTGCTAGACATATGTGTGCGCTTTCTTCTACTGG
CGCCATCAATGCACATCTTCCCCTCTACTTTTTCAACCTTCTCAATCCAT
CACTCCGCCTGCCCTGCCGTCCTTTCTCTTCACTCCCTCCTCCTCAACCA
CATACAGACACAGACGCATCCCTAGCGCTGACCATACTCCACCCCCTACC
GCAAATCATGCCCTCCTTTTCACCCATCACCTTTGTCGACCTCCCCAAAT
ACGGTATCTCTTACGAGACCAAGTCTCAGAAGCGATACGTTGCAATGACT
TACTCACCCGACGCTGAGGATCCCAGCACCACCCTCAAGCCGCGTGGCCA
CGGCTTTTTCCCGCCTGGCAGTAAGGTGGGTTTCTATGTTGAGCGGAAAA
CGGGCATGCGTATTTCTGATGAAATGCAGCATCAACTCATGGCCAACGAG
AAGAAGGAACGCCGCAACCCCTTCTACGCCCCTCCTACAACCCCTTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCAATCGTCACCCTAAGTCTTGTCCCTCCTCCGACGACAGCTACC
ACAACGGCCAAACGAAAGCTGCCCTCCCCTTCCTCCCGTCCTTCCTCCCT
CCCTCCCCTTCCCATAAACAAGCACAAAAAGTCTCTTGCTCCTCCTGCCC
TTCTCTCGCTCCTCCCAGTGAGAACGAAAGCTTCTCACCCTCCCTCCTTC
CCGTCCTCCTTTCCTCCCGTCCGTGGTAGGGGAAAGACTTCGAAAAAGCA
CGCTGTAAGTCTCTGCATCCCTCCCTCCCTCCCTCTTTCCCTCCCTTCCT
CGTTGCTAGCCCGAGACGAGGAAGGAAGAGTGATGAGGCGTTCGGGAAGA
CAGGTGGGGAAAGTGCTGATGGAGGAGGGGAGGGAAGGGGAAAGGGAAGG
AAGGAAGGGGAAGAGAGGAAGATATGCGGAGATGGATAGTGAGGAGGAAG
AGGAGGAGGAGGAGGAAGAGGAGGAGAAGATGGGTAGCAGGAAGAGGAAG
GGGAAAAAGGAGAAAAACAAGGCGAGGAGGGGAAACATTGAGCGAAGAAG
GTTGGTCGGGGAGAAAAAAAAAGATCTAGAAATATGGTGTTTCAATGACA
AGGACCGGGAAGAAGAGGAGAGGACAACGCAGGGCGAGGACGAGGAGGAG
GAAGGGAAGGAGGAGGAGGAGGAGGAGGAGGAGTTTCCATTGCTGTACGA
ATACCTGAGTCATAAGCGCCAGAGGCTCTTGAAGGTAAGGCGGGAGGGAG
GGAGGGAGGGAGGGAGGGGAGTATGGATGGAATACAGGTTGATGTTGACA
CACTCCTTTCCCTTCCCCCTCTCCTCCCTTTCCTCTCTCTCGCTCCCTCC
CTTCATCCCTCCCTCAGTGGATGCCCTACTTCGTCTACCCCCGTCCCCCT
GCTCCCCCTCCCCCTCCATCTCTTCCCAAGCCAACAACATCATCATCATC
AGCAGCAGCAGCAGCAGCCGCGCATGCAGACGGAGGGAGGGGTGGACGGC
TCGAACGACGCAATCGCCGCCTCCGTCAGAAATCGGGAGAGGGAGGGAGG
GAGGAAGGGATGGTGACGATTGTACAGCAACAGCAGCAGGAGCAAATGCT
ACGGCAGCAGGAGGAGGAGCAGCAGGAGCAGGAGAAGCAGAAGCAGGAGC
AGCAACAGCAGCAGCGGGAACCGGAGCCGCAGAGGCATGGATGGAGGAAG
GGGGAGGAGGTGCTCGTGTTTTTCCGTAATATGGACGACGGGCGAGAACT
GAGTGTGGATGCATACTGGAGGGCGAGGGAGGGAGGGAGAGAGGGGGGAG
GAAGAGGTGGGTGGAGGAGGTGGAAGAGGAGAAGGGGGAAGGGGGGGAGG
AGGAGTGGGGGGAGGGGGAGGGGGAGGATGACGAGGAGAGTGTCCTGACT
GTCAGCAGTATAGGGGAGGAAGGGGAGGAGGGAACGGAAGTGCAACAGCA
GCATGTTGGGAAGGGAGGGAGTGAGGGAGGGAAGAAAGAGGCGGAGGATG
ACAAGGAGAAGGAGGCAAAGCACCTGGTTGAGCAGGAAGAGGGCCAGCAT
CAAGTGCGGGAGCAGCAGCATTTTGAGGGGGGAGGAGGGAAGGGAGGAGA
TGAGGAGACGAAAAACAATAAGGAGGAAGGAAGACAACATCAAGTGCAGG
AGGAGGAAGAGGGCGGGGGAAGGGAGAGGGAGGGACCAGGAGGACGGCAG
GCGGAATCGAAGGACGGAGAATCAGAGGAGGGGAAAGAGGAAGAGGAAGA
GCAAACTAGGAAGTGCGAGGACGAGGATAGGGTGGATACGGTCTTTCTCG
AAGCTATGTCAGGCAAGGAGAAAGGAGGAGAGAAAGAGAGGGAAACGGAG
GAGGAGGGAGAGGGAGGGAGGGAGGATGGGAAGGAGAAAGAGGCGAGAGT
GGAGGAGGGGGGACAAGCGGAGGGGCTTAAGGATGAAATGGATGGCCTGG
CCGAGTTGTTGCAAGCAGGAACACTGATGGATGTGGACGAGGGAGGAGAG
GAGGAGATGGTCGAGGGGGAGGAGGGGGTTGAAGCCATGCTGCATGATGA
TGGGGCCTTTGCGTTCAGGACATGA

Coding sequence (CDS) from alignment at chr22:60728..63602+

>NO22G00150.1 ID=NO22G00150.1|Name=NO22G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at chr22:60728..63602+ (Nannochloropsis oceanica)
ATGTGTGCGCTTTCTTCTACTGGCGCCATCAATGCACATCTTCCCCTCTA
CTTTTTCAACCTTCTCAATCCATCACTCCGCCTGCCCTGCCGTCCTTTCT
CTTCACTCCCTCCTCCTCAACCACATACAGACACAGACGCATCCCTAGCG
CTGACCATACTCCACCCCCTACCGCAAATCATGCCCTCCTTTTCACCCAT
CACCTTTGTCGACCTCCCCAAATACGGTATCTCTTACGAGACCAAGTCTC
AGAAGCGATACGTTGCAATGACTTACTCACCCGACGCTGAGGATCCCAGC
ACCACCCTCAAGCCGCGTGGCCACGGCTTTTTCCCGCCTGGCAGTAAGGT
GGGTTTCTATGTTGAGCGGAAAACGGGCATGCGTATTTCTGATGAAATGC
AGCATCAACTCATGGCCAACGAGAAGAAGGAACGCCGCAACCCCTTCTAC
GCCCCTCCTACAACCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAATCGTCACCCTAAGTCTTG
TCCCTCCTCCGACGACAGCTACCACAACGGCCAAACGAAAGCTGCCCTCC
CCTTCCTCCCGTCCTTCCTCCCTCCCTCCCCTTCCCATAAACAAGCACAA
AAAGTCTCTTGCTCCTCCTGCCCTTCTCTCGCTCCTCCCAGTGAGAACGA
AAGCTTCTCACCCTCCCTCCTTCCCGTCCTCCTTTCCTCCCGTCCGTGCC
CGAGACGAGGAAGGAAGAGTGATGAGGCGTTCGGGAAGACAGGTGGGGAA
AGTGCTGATGGAGGAGGGGAGGGAAGGGGAAAGGGAAGGAAGGAAGGGGA
AGAGAGGAAGATATGCGGAGATGGATAGTGAGGAGGAAGAGGAGGAGGAG
GAGGAAGAGGAGGAGAAGATGGGTAGCAGGAAGAGGAAGGGGAAAAAGGA
GAAAAACAAGGCGAGGAGGGGAAACATTGAGCGAAGAAGGTTGGTCGGGG
AGAAAAAAAAAGATCTAGAAATATGGTGTTTCAATGACAAGGACCGGGAA
GAAGAGGAGAGGACAACGCAGGGCGAGGACGAGGAGGAGGAAGGGAAGGA
GGAGGAGGAGGAGGAGGAGGAGTTTCCATTGCTGTACGAATACCTGAGTC
ATAAGCGCCAGAGGCTCTTGAAGTGGATGCCCTACTTCGTCTACCCCCGT
CCCCCTGCTCCCCCTCCCCCTCCATCTCTTCCCAAGCCAACAACATCATC
ATCATCAGCAGCAGCAGCAGCAGCCGCGCATGCAGACGGAGGGAGGGGTG
GACGGCTCGAACGACGCAATCGCCGCCTCCGTCAGAAATCGGGAGAGGGA
GGGAGGGAGGAAGGGATGGTGACGATTGTACAGCAACAGCAGCAGGAGCA
AATGCTACGGCAGCAGGAGGAGGAGCAGCAGGAGCAGGAGAAGCAGAAGC
AGGAGCAGCAACAGCAGCAGCGGGAACCGGAGCCGCAGAGGCATGGATGG
AGGAAGGGGGAGGAGAGGTGGGTGGAGGAGGTGGAAGAGGAGAAGGGGGA
AGGGGGGGAGGAGGAGTGGGGGGAGGGGGAGGGGGAGGATGACGAGGAGA
GTGTCCTGACTGTCAGCAGTATAGGGGAGGAAGGGGAGGAGGGAACGGAA
GTGCAACAGCAGCATGTTGGGAAGGGAGGGAGTGAGGGAGGGAAGAAAGA
GGCGGAGGATGACAAGGAGAAGGAGGCAAAGCACCTGGTTGAGCAGGAAG
AGGGCCAGCATCAAGTGCGGGAGCAGCAGCATTTTGAGGGGGGAGGAGGG
AAGGGAGGAGATGAGGAGACGAAAAACAATAAGGAGGAAGGAAGACAACA
TCAAGTGCAGGAGGAGGAAGAGGGCGGGGGAAGGGAGAGGGAGGGACCAG
GAGGACGGCAGGCGGAATCGAAGGACGGAGAATCAGAGGAGGGGAAAGAG
GAAGAGGAAGAGCAAACTAGGAAGTGCGAGGACGAGGATAGGGTGGATAC
GGTCTTTCTCGAAGCTATGTCAGGCAAGGAGAAAGGAGGAGAGAAAGAGA
GGGAAACGGAGGAGGAGGGAGAGGGAGGGAGGGAGGATGGGAAGGAGAAA
GAGGCGAGAGTGGAGGAGGGGGGACAAGCGGAGGGGCTTAAGGATGAAAT
GGATGGCCTGGCCGAGTTGTTGCAAGCAGGAACACTGATGGATGTGGACG
AGGGAGGAGAGGAGGAGATGGTCGAGGGGGAGGAGGGGGTTGAAGCCATG
CTGCATGATGATGGGGCCTTTGCGTTCAGGACATGA

Synonyms

Publications