Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:753484..756290 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G02480.1 vs.
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])
HSP 1 Score: 91.7 bits (226), Expect = 6.200e-15
Identity = 62/178 (34.83%), Postives = 95/178 (53.37%), Query Frame = 0
Query: 258 RRATKENLSGLTAEEKLERRKMRARMYNRLSRQRCDQLRSDLCDDVNRMGIYKNIVDDAPDMMCVISSDIQSQVLYVNKAARCVLPTEPTQLVGSSFWNIVHKDDKMAVLTALSAVTTLKSARKVEKVRCRVVT-------------KHPAVYMS---VRMTLANGMQGIVCVMCHED 420
+RA + +LSG T EK ERRK RARMY+ R+R + L V + +YK +VD+AP++ V+S+D Q++VLY N A P VG S W +VH++DK V+ A ++ K +V + RCR+ T + V +S V +++ G QG++ V+ ED
Sbjct: 278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEK--EEVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIRRED 453
The following BLAST results are available for this feature:
BLAST of NO21G02480.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 Expect = 6.20e-15 / Id = 34.83 Sequence EWM23721.1
Match Name E-value Identity Description
EWM23721.1 6.200e-15 34.83 conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G02480.1 ID=NO21G02480.1|Name=NO21G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2034bp CTGGCCAAATGCCCTTGCATGGGCTCATCGAGTCATGACCCTGTGCTTTT GACCTCAGCATTATGTGATATGGCTGTTTGTATAGAACAACTATCTCCCG ATCCCAATCTCACGGTGTAATCGCCCACCTACTGGCAGACACAGATCACA GTCCACTCGGGCCTCTGCCGGCCCAATGACGTTCGCTTACACATCTTCTT ATGCTCCTATCGGGGGCTGCGGTCCCACCGCTGAGCAGCGGCGCCATCAG AACCAGTGCCACTGGCCCCGTGGAATGAAGCAGAAGCTTTATGGTTTGTT GCCTATTTCCTCTGACGATAGAATGACATATGACGGTGCTGCAGCCCTGT GCAGCCTAGGCTGCAGCTTGGCAACACGCTCCGCCGCTGCTGACTCCCTC CTCGTCTCTACGCCGCCTTACTCTTCGCCTTGGGCCTCTTATCTCTCAGC AGCAAATCACGTTTTAGAACTTCAAAAGCACACGGCCGACAAGTCATCGC AATTCTTCCTGACCCGGCACCAGCAACACTTCAGCCTATCGCCCGTTCAT CAACACCCAACCCTTCAGCGTGAGACGACCAATGTACTCTCCCAGGTCTC GCCGTCTTCTCAACCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGAAGCAGCGGCAGCATTTCAAATATCCGCCGCTACAGCTCCATTCCACC CCAGAATGCCTAGCGCAGTCGGTCAAGAAGCAGTGCGTGATGGCGTCGAT CGACACTTTTCCGATGAATGAATTCCCGCTCCCCGAGCACGTGGAGGCCG AGCTCTACCCACCGATTGCACCGCTATCCCAGACCTTCCTGCCGCTGCAA GAGATCCAAGCAGGTGTGATGGGTGTGTCGGTGGGATTACTGCCTGGCAG ATGCTCCAAGATCATGGGAAAGTACCTTCCGAGCATAGAGAAGCAGCGAC GAGCGACGAAAGAGAACTTATCGGGCTTAACGGCAGAGGAGAAGCTAGAG CGACGCAAGATGCGCGCACGCATGTACAACCGCCTGTCTCGTCAACGCTG CGACCAGCTGCGTAGTGACCTGTGTGATGACGTGAACCGCATGGGCATCT ACAAGAATATTGTCGACGATGCGCCGGACATGATGTGTGTTATATCATCA GATATTCAGAGCCAGGTGCTCTACGTCAATAAAGCTGCTCGATGTGTCCT CCCCACTGAGCCCACGCAGCTGGTGGGGTCCAGCTTCTGGAACATCGTCC ACAAAGATGACAAGATGGCGGTACTCACGGCTCTCTCCGCCGTCACCACC CTCAAGTCGGCCAGGAAAGTAGAGAAAGTACGCTGCCGTGTCGTCACCAA GCATCCCGCTGTCTATATGTCTGTGCGGATGACGCTAGCGAATGGAATGC AGGGTATTGTCTGTGTAATGTGCCACGAAGATCCCCTGGCAGCCATTTTG TGCGTGTCGCCTGATGGACGGCCGTCTATGACATAGGGTGCTCTCTTTCT ATATATTTCTCTAAATTATGATCTAACAATGAGTGGTCGTGTAGGTAAGG CACTCGCGGCGGACACGGCTGAGGGCGTGCTTTGACTTCCACGAGGACAT AATGTGGCCCGATCTATTGCTATCAGGGACAAGACTGTCCGACCGGAGTC AGTGTATCGACCATGAAGATGATGCATTTCCGCAATATGTATAAGAGAAG GCTCGAATAAGCCCATATTGTACTGGTCCGTCCCTTCTTGACTGATTGCT GCTTCCTTCCCATGACGTTGACGGTTGGGTGATGCAGGGAAGGTGAGTCA GGAGGTCTTTTCTGCCTGCATCACCAGAGACGAAACGTTTCAGGAGCACT GACTGTTAAGTGGCCGCAGTTTTACAAGTGACTATACACTAGATGAGGTA GAAGGTCACAAGTGCAAAGACGGTGATGAGATTGCAGAGAAAGTGATGGG AAAGTATAGAAAATGGGTCTGTGTAATCCGAGATTATTTTTACTGTATCA GGCGATAGGAGAAAGAAGGAATGGCAAGGGGGGG back to top protein sequence of NO21G02480.1
>NO21G02480.1-protein ID=NO21G02480.1-protein|Name=NO21G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp MTFAYTSSYAPIGGCGPTAEQRRHQNQCHWPRGMKQKLYGLLPISSDDRM TYDGAAALCSLGCSLATRSAAADSLLVSTPPYSSPWASYLSAANHVLELQ KHTADKSSQFFLTRHQQHFSLSPVHQHPTLQRETTNVLSQVSPSSQPQQQ QQQQQQQQQKQRQHFKYPPLQLHSTPECLAQSVKKQCVMASIDTFPMNEF PLPEHVEAELYPPIAPLSQTFLPLQEIQAGVMGVSVGLLPGRCSKIMGKY LPSIEKQRRATKENLSGLTAEEKLERRKMRARMYNRLSRQRCDQLRSDLC DDVNRMGIYKNIVDDAPDMMCVISSDIQSQVLYVNKAARCVLPTEPTQLV GSSFWNIVHKDDKMAVLTALSAVTTLKSARKVEKVRCRVVTKHPAVYMSV RMTLANGMQGIVCVMCHEDPLAAILCVSPDGRPSMT* back to top mRNA from alignment at chr21:753484..756290+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02480.1 ID=NO21G02480.1|Name=NO21G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2807bp|location=Sequence derived from alignment at chr21:753484..756290+ (Nannochloropsis oceanica) CTGGCCAAATGCCCTTGCATGGGCTCATCGAGTCATGACCCTGTGCTTTT
GACCTCAGCATTATGTGATATGGCTGTTTGTATAGAACAACTATCTCCCG
ATCCCAATCTCACGGTGTAATCGCCCACCTACTGGCAGACACAGATCACA
GTCCACTCGGGCCTCTGCCGGCCCAATGACGTTCGCTTACACATCTTCTT
ATGCTCCTATCGGGGGCTGCGGTCCCACCGCTGAGCAGCGGCGCCATCAG
AACCAGTGCCACTGGCCCCGTGGAATGAAGCAGAAGCTTTATGGTTTGTT
GCCTATTTCCTCTGACGATAGAATGACATATGACGGTGCTGCAGCCCTGT
GCAGCCTAGGCTGCAGCTTGGCAACACGCTCCGCCGCTGCTGACTCCCTC
CTCGTCTCTACGCCGCCTTACTCTTCGCCTTGGGCCTCTTATCTCTCAGC
AGCAAATCACG GTACGTTTTTCAAACGCGATTCACTCGATCCGCTTTATA
CCTCATCCCTGGCCTCGTACGTATCCCTTCCTCCTCCCCACCTCCTTGTT
CCACCCCCTCGTCCTTCCCGCCCTTCTCCTCCCTTCTCCTTCTCCCCATC
CTCCTCCTCGCTTCCTCCTCCCCCCTTCTCTTCCCCCCATCCTCCCTCTC
CTTTCCTCCTCCTCCACTCCTCCTTATTCCTTCTCTTCCTACCCCATCCT
TTTTCGCCCTCCTTCTCCTTCTCCCACCTCCTCCCCTCCCCGCCTCCCTC
CTTTTCTTACTCCTCTTCGTTCTCCTTCCTCCCTCCCCCCCGCGTATTTC
CTTTGCGCAAACTTTTCAACTTGAACTGGTATTTCCCAATCAGCGTATCC
ATTGACAGGATTTGTAGGTTTACAATCACAGGCTTTATGATCATTGAGGT
TCATTGTGCTAGTGCTCACTTTTTGTTTGAATTTATGGCGGGGACAATAT
GTGATATGGTTAAAGAGACTGCTCCCTCCATTGCCATTATTTGTTTCGCT
ATCAGCATTGTGAGCGGGAAATAGGCGCGTCCCAGGTCAGGCAACCCTCT
ACGTGTACACCGGCTACATGTAGCGTATCTATTCATTTAGACAAGTCCGC
TCTCTCACATACACATATAATCCTCCATACACACAGTTTTAGAACTTCAA
AAGCACACGGCCGACAAGTCATCGCAATTCTTCCTGACCCGGCACCAGCA
ACACTTCAGCCTATCGCCCGTTCATCAACACCCAACCCTTCAGCGTGAGA
CGACCAATGTACTCTCCCAGGTCTCGCCGTCTTCTCAACCACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCGGCAGCATTTCAAATA
TCCGCCGCTACAGCTCCATTCCACCCCAGAATGCCTAGCGCAGTCGGTCA
AGAAGCAGTGCGTGATGGCGTCGATCGACACTTTTCCGATGAATGAATTC
CCGCTCCCCGAGCACGTGGAGGCCGAGCTCTACCCACCGATTGCACCGCT
ATCCCAGACCTTCCTGCCGCTGCAAGAGATCCAAGCAGGTGTGATGGGTG
TGTCGGTGGGATTACTGCCTGGCAGATGCTCCAAGATCATGGGAAAGTAC
CTTCCG GTAAGGGATATGATGGATATGTGCTGGGTGCTTGAGTGTTTGGT
GTGATCTATTTTGGGCACTCACTCTTTCTCTCCATTTACTCGTTCTTCCT
ACAGAGCATAGAGAAGCAGCGACGAGCGACGAAAGAGAACTTATCGGGCT
TAACGGCAGAGGAGAAGCTAGAGCGACGCAAGATGCGCGCACGCATGTAC
AACCGCCTGTCTCGTCAACGCTGCGACCAGCTGCGTAGTGACCTGTGTGA
TGACGTGAACCGCATGGGCATCTACAAGAATATTGTCGACGATGCGCCGG
ACATGATGTGTGTTATATCATCAGATATTCAGAGCCAGGTGCTCTACGTC
AATAAAGCTGCTCGATGTGTCCTCCCCACTGAGCCCACGCAGCTGGTGGG
GTCCAGCTTCTGGAACATCGTCCACAAAGATGACAAGATGGCGGTACTCA
CGGCTCTCTCCGCCGTCACCACCCTCAAGTCGGCCAGGAAAGTAGAGAAA
GTACGCTGCCGTGTCGTCACCAAGCATCCCGCTGTCTATATGTCTGTGCG
GATGACGCTAGCGAATGGAATGCAGGGTATTGTCTGTGTAATGTGCCACG
AAGATCCCCTGGCAGCCATTTTGTGCGTGTCGCCTGATGGACGGCCGTCT
ATGACATAG GGTGCTCTCTTTCTATATATTTCTCTAAATTATGATCTAAC
AATGAGTGGTCGTGTAGGTAAGGCACTCGCGGCGGACACGGCTGAGGGCG
TGCTTTGACTTCCACGAGGACATAATGTGGCCCGATCTATTGCTATCAGG
GACAAGACTGTCCGACCGGAGTCAGTGTATCGACCATGAAGATGATGCAT
TTCCGCAATATGTATAAGAGAAGGCTCGAATAAGCCCATATTGTACTGGT
CCGTCCCTTCTTGACTGATTGCTGCTTCCTTCCCATGACGTTGACGGTTG
GGTGATGCAGGGAAGGTGAGTCAGGAGGTCTTTTCTGCCTGCATCACCAG
AGACGAAACGTTTCAGGAGCACTGACTGTTAAGTGGCCGCAGTTTTACAA
GTGACTATACACTAGATGAGGTAGAAGGTCACAAGTGCAAAGACGGTGAT
GAGATTGCAGAGAAAGTGATGGGAAAGTATAGAAAATGGGTCTGTGTAAT
CCGAGATTATTTTTACTGTATCAGGCGATAGGAGAAAGAAGGAATGGCAA
GGGGGGG back to top Coding sequence (CDS) from alignment at chr21:753484..756290+
>NO21G02480.1 ID=NO21G02480.1|Name=NO21G02480.1|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at chr21:753484..756290+ (Nannochloropsis oceanica) ATGACGTTCGCTTACACATCTTCTTATGCTCCTATCGGGGGCTGCGGTCC CACCGCTGAGCAGCGGCGCCATCAGAACCAGTGCCACTGGCCCCGTGGAA TGAAGCAGAAGCTTTATGGTTTGTTGCCTATTTCCTCTGACGATAGAATG ACATATGACGGTGCTGCAGCCCTGTGCAGCCTAGGCTGCAGCTTGGCAAC ACGCTCCGCCGCTGCTGACTCCCTCCTCGTCTCTACGCCGCCTTACTCTT CGCCTTGGGCCTCTTATCTCTCAGCAGCAAATCACGTTTTAGAACTTCAA AAGCACACGGCCGACAAGTCATCGCAATTCTTCCTGACCCGGCACCAGCA ACACTTCAGCCTATCGCCCGTTCATCAACACCCAACCCTTCAGCGTGAGA CGACCAATGTACTCTCCCAGGTCTCGCCGTCTTCTCAACCACAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCGGCAGCATTTCAAATA TCCGCCGCTACAGCTCCATTCCACCCCAGAATGCCTAGCGCAGTCGGTCA AGAAGCAGTGCGTGATGGCGTCGATCGACACTTTTCCGATGAATGAATTC CCGCTCCCCGAGCACGTGGAGGCCGAGCTCTACCCACCGATTGCACCGCT ATCCCAGACCTTCCTGCCGCTGCAAGAGATCCAAGCAGGTGTGATGGGTG TGTCGGTGGGATTACTGCCTGGCAGATGCTCCAAGATCATGGGAAAGTAC CTTCCGAGCATAGAGAAGCAGCGACGAGCGACGAAAGAGAACTTATCGGG CTTAACGGCAGAGGAGAAGCTAGAGCGACGCAAGATGCGCGCACGCATGT ACAACCGCCTGTCTCGTCAACGCTGCGACCAGCTGCGTAGTGACCTGTGT GATGACGTGAACCGCATGGGCATCTACAAGAATATTGTCGACGATGCGCC GGACATGATGTGTGTTATATCATCAGATATTCAGAGCCAGGTGCTCTACG TCAATAAAGCTGCTCGATGTGTCCTCCCCACTGAGCCCACGCAGCTGGTG GGGTCCAGCTTCTGGAACATCGTCCACAAAGATGACAAGATGGCGGTACT CACGGCTCTCTCCGCCGTCACCACCCTCAAGTCGGCCAGGAAAGTAGAGA AAGTACGCTGCCGTGTCGTCACCAAGCATCCCGCTGTCTATATGTCTGTG CGGATGACGCTAGCGAATGGAATGCAGGGTATTGTCTGTGTAATGTGCCA CGAAGATCCCCTGGCAGCCATTTTGTGCGTGTCGCCTGATGGACGGCCGT CTATGACATAG back to top