NO21G02450, NO21G02450 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G02450 vs. NCBI_GenBank
Match: EWM29482.1 (transcription-repair coupling factor [Nannochloropsis gaditana]) HSP 1 Score: 677.6 bits (1747), Expect = 4.100e-191 Identity = 382/531 (71.94%), Postives = 425/531 (80.04%), Query Frame = 0 Query: 142 MALSGMREVSHIDTAPSSRKPVFTHIEAWDPAKVERALRAELARGGQAFYVVPRIRDIPHHVDMLHDLLKGARKDGKDATICVAHGALPAGEAEEVLVRFAMREGDVLVATTLIENGLDVPTVNTVVVAQAHKLGLASLYQLRGRVGRSDKQAFAYFFHPRAVKGEEGEKGGREIAAEEKGRERKTSATHTQWDDXXXXXXXTDNAEILSTSLSSDPFLRKRQIALLGGRVMTSEAVQRLAALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYMDMLAEALLKVRGTAIEPTPFTDINLMDGQPTNQVLSASFLPSSFFPNEETRMAEVEEARLAPTFKHLRDLHKRWRVTYHSSSPHTPLPRAVRMFFIRLNLLLACRILSGETLALIKPT-EDSRPRLILVTRNLLSFHWDALSSALPSSLSPSR-----HPSQR---XXXXXXXXXXXXXXXXXXXXXXXGKEGVDKVKKRGCIIMELRDETLAAETALSVFVPLAEVILDQRRGLAERIGQGR 664 MALSGMR+VSHIDTAPSSRKPV THI AW P VE ALR ELA GGQAFYVVPRIRDIPHHV+ML DLLKGARKDGKDA I VAHGALPAGEAEEVLVRFAMR+GDVLVATTLIENGLDVP+VNTVVVAQAHKLGLASLYQLRGRVGRS+KQAFA+FFHPR+V+GE G+E +EKG + + SLSSDP LRKRQ+A LGG+ MT EAVQRLAALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYM+MLAEAL+KVRGTAIEPTP+T+INL DG QVLS+SFLPS+FFPNE+TR AE+EEARLAP+F+ LR L KRWRVTYH S+ +P+PR+VR+FFIRLNLLLA R+LSGE L L+K + + R RL+LVTRNLLSFHWDAL ALP S SR HP+ R XXXXXXXXXXXXX ++GV + KRGCI+MELRD ++AAETAL+V P AEVIL+QR LAERIGQGR Sbjct: 1 MALSGMRDVSHIDTAPSSRKPVETHITAWAPEAVETALREELAHGGQAFYVVPRIRDIPHHVEMLKDLLKGARKDGKDAAIAVAHGALPAGEAEEVLVRFAMRQGDVLVATTLIENGLDVPSVNTVVVAQAHKLGLASLYQLRGRVGRSEKQAFAFFFHPRSVQGE-----GKEAGKQEKG----------------------GKGDQVKASLSSDPALRKRQLAQLGGKSMTQEAVQRLAALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYMNMLAEALVKVRGTAIEPTPYTEINLGDGLSNEQVLSSSFLPSAFFPNEKTRTAEIEEARLAPSFEKLRSLQKRWRVTYHCST--SPMPRSVRLFFIRLNLLLASRVLSGENLVLLKSSAAEGRARLVLVTRNLLSFHWDALCGALPPSHFSSRPSARPHPNLRRNVYFREGSIENGXXXXXXXXXXXXXXRDGVPRKGKRGCIVMELRDASMAAETALAVLFPFAEVILNQRESLAERIGQGR 502
BLAST of NO21G02450 vs. NCBI_GenBank
Match: WP_088428761.1 (transcription-repair coupling factor [Halomicronema hongdechloris] >ASC69097.1 Transcription-repair-coupling factor [Halomicronema hongdechloris C2206]) HSP 1 Score: 363.6 bits (932), Expect = 1.300e-96 Identity = 234/581 (40.28%), Postives = 313/581 (53.87%), Query Frame = 0 Query: 1 MDRLVLGDVGFGKTEVAVRAIHRAVCNHRQCVLLAPTTILAAQHYARLCARF-PW-MNIEMMRGSDTASKAKDVRARLKEGVIQVVVGTTSVTGKNVRFKNLGLVVVDEEQRLGVSQKEKLKALAKGVDVLTLSATPIPRTLQMALSGMREVSHIDTAPSSRKPVFTHIEAWDPAKVERALRAELARGGQAFYVVPRIRDIPHHVDMLHDLLKGARKDGKDATICVAHGALPAGEAEEVLVRFAMREGDVLVATTLIENGLDVPTVNTVVVAQAHKLGLASLYQLRGRVGRSDKQAFAYFFHPRAVKGEEGEKGGREIAAEEKGRERKTSATHTQWDDXXXXXXXTDNAEILSTSLSSDPFLRKRQIALLGGRVMTSEAVQRLAALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYMDMLAEALLKVRGTAIEPTPFTDINLMDGQPTNQVLSASFLPSSFFPNEETRMAEVEEARLAPTFKHLRDLHKRWRVTYHSSSPHTPLPRAVRMFFIRLNLLLACRILSGETLALIKPTEDSRPRLILVTRNLLSFHWDALSSALPSSLSP 580 MDRLV GDVGFGKTEVA+RAI +AV HRQ LLAPTTIL QHY L RF P+ + + ++ TA + K + ARL G + VVVGT + GK V+FK+LGL+VVDEEQR GV+QKEK+K L VDVLTLSATPIPRTL MALSG+RE+S I T P SR+P+ TH+ +DP V A+R EL RGGQ FYVVPR+ I ++ L + GAR + +AHG +P GE E ++ F+ E D+LV TT+IE+GLD+P VNT++V AH+ GL+ LYQLRGRVGR+ QA A+ F+PR + +T +A +RL A++E++ LG G QLA D+ IRG G +LG EQSG +G+D+Y DML EA ++RG I T ++L +F+PS++ P E +M+ A + L L S + P+P A + +L +I A IKP + + +++ T + W L LPS L P Sbjct: 633 MDRLVCGDVGFGKTEVALRAIFKAVTAHRQVALLAPTTILTQQHYHTLKERFAPYPIQVRLLNRFRTAEEKKAILARLATGELDVVVGTHQLLGKGVKFKDLGLLVVDEEQRFGVNQKEKIKTLKAQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLAPYDPEAVRAAIRQELDRGGQVFYVVPRVEGIEEILERLRQWVPGAR-------LTLAHGQMPEGELESTMLSFSNGEADILVCTTIIESGLDIPRVNTILVEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPRQ-------------------------------------------------------------------QALTEKARRRLRAIQEFTQ-LGSGYQLALRDMEIRGVGNLLGAEQSGQM-DAIGFDLYTDMLEEAFAEIRGQEIPQVEDTQVDLP---------VTAFIPSNYIPELEQKMSAYRSLAAASSQVELTQL------VADLSDRYGPIPHATEQL---IRVLALKQIAKSLGFARIKP--EGKQHVVMET-PMEEPAWKRLQEGLPSHLRP 1116
BLAST of NO21G02450 vs. NCBI_GenBank
Match: WP_016869204.1 (transcription-repair coupling factor [Fischerella muscicola] >PLZ93449.1 transcription-repair coupling factor [Fischerella muscicola CCMEE 5323]) HSP 1 Score: 355.9 bits (912), Expect = 2.800e-94 Identity = 215/525 (40.95%), Postives = 294/525 (56.00%), Query Frame = 0 Query: 1 MDRLVLGDVGFGKTEVAVRAIHRAVCNHRQCVLLAPTTILAAQHYARLCARF-PW-MNIEMMRGSDTASKAKDVRARLKEGVIQVVVGTTSVTGKNVRFKNLGLVVVDEEQRLGVSQKEKLKALAKGVDVLTLSATPIPRTLQMALSGMREVSHIDTAPSSRKPVFTHIEAWDPAKVERALRAELARGGQAFYVVPRIRDIPHHVDMLHDLLKGARKDGKDATICVAHGALPAGEAEEVLVRFAMREGDVLVATTLIENGLDVPTVNTVVVAQAHKLGLASLYQLRGRVGRSDKQAFAYFFHPRAVKGEEGEKGGREIAAEEKGRERKTSATHTQWDDXXXXXXXTDNAEILSTSLSSDPFLRKRQIALLGGRVMTSEAVQRLAALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYMDMLAEALLKVRGTAIEPTPFTDINLMDGQPTNQVLSASFLPSSFFPNEETRMAEVEEARLAPTFKHLRDLHKRWRVTYHS-SSPHTPLPRAVRM 523 MDRLV GDVGFGKTEVA+RAI +AV +Q LLAPTTIL QHY L RF P+ +NI ++ + + +D++ RL G + VVVGT + K+V FK+LG++VVDEEQR GV+QKEK+K L VDVLTLSATPIPRTL M+LSG+RE+S I T P SR+P+ TH+ +P V A+R EL RGGQ FYVVPR+ I D L ++ GAR I +AHG + AGE E +++ F+ E D+LV TT+IE+GLD+P VNT+++ AH+ GLA LYQLRGRVGR+ QA A+ F+P+ R ++ A QRL A++E++ LG G QLA D+ IRG G +LG EQSG +G+D+YM+ML EA+ ++RG I T I+L +F+P+ + P+ + +M+ A + + L + W Y + P T L R + + Sbjct: 662 MDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRSPQERRDIQKRLVSGELDVVVGTHQLLSKDVNFKDLGMLVVDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLAPMNPETVRSAIRQELDRGGQVFYVVPRVEGIEERTDELRQMIPGAR-------IAIAHGQMEAGELESIMLSFSSAEADILVCTTIIESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQ-------------------------------------------------------------------RTLSDAARQRLRAIQEFTQ-LGSGYQLAVRDMEIRGVGNLLGAEQSGQM-EAIGFDLYMEMLEEAIREIRGQEIPKVEDTQIDLN---------LTAFVPADYIPDIDQKMSAYRAVAAAKSKEELTQIAAEWSDRYGTIPKPATQLLRVMEL 1101
BLAST of NO21G02450 vs. NCBI_GenBank
Match: WP_017309609.1 (transcription-repair coupling factor [Fischerella sp. PCC 9339]) HSP 1 Score: 355.9 bits (912), Expect = 2.800e-94 Identity = 214/509 (42.04%), Postives = 289/509 (56.78%), Query Frame = 0 Query: 1 MDRLVLGDVGFGKTEVAVRAIHRAVCNHRQCVLLAPTTILAAQHYARLCARF-PW-MNIEMMRGSDTASKAKDVRARLKEGVIQVVVGTTSVTGKNVRFKNLGLVVVDEEQRLGVSQKEKLKALAKGVDVLTLSATPIPRTLQMALSGMREVSHIDTAPSSRKPVFTHIEAWDPAKVERALRAELARGGQAFYVVPRIRDIPHHVDMLHDLLKGARKDGKDATICVAHGALPAGEAEEVLVRFAMREGDVLVATTLIENGLDVPTVNTVVVAQAHKLGLASLYQLRGRVGRSDKQAFAYFFHPRAVKGEEGEKGGREIAAEEKGRERKTSATHTQWDDXXXXXXXTDNAEILSTSLSSDPFLRKRQIALLGGRVMTSEAVQRLAALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYMDMLAEALLKVRGTAIEPTPFTDINLMDGQPTNQVLSASFLPSSFFPNEETRMAEVEEARLAPTFKHLRDLHKRWRVTY 508 MDRLV GDVGFGKTEVA+RAI +AV +Q LLAPTTIL QHY L RF P+ +NI ++ TA + +D++ RL G + VVVGT + GK+V FK+LG++VVDEEQR GV+QKEK+K L VDVLTLSATPIPRTL M+LSG+RE+S I T P SR+P+ TH+ +P V A+R EL RGGQ FYVVPRI I D L +++ GAR I +AHG + A E E +++ F+ E D+LV TT+IE+GLD+P VNT+++ AH+ GLA LYQLRGRVGR+ QA A+ F+P+ R ++ A QRL A++E++ LG G QLA D+ IRG G +LG EQSG +G+D+YM+ML EA+ ++RG I T I+L +F+P+ + P+ + +M+ A + + L + W Y Sbjct: 719 MDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTAQERRDIQKRLASGELDVVVGTHQLLGKDVHFKDLGMLVVDEEQRFGVNQKEKIKTLKTLVDVLTLSATPIPRTLYMSLSGIREMSLIATPPPSRRPIKTHLAPINPETVRSAIRQELDRGGQVFYVVPRIEGIEETTDGLREMIPGAR-------IAIAHGQMEASELESIMLSFSNGEADILVCTTIIESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQ-------------------------------------------------------------------RTLSDAARQRLRAIQEFTQ-LGSGYQLAMRDMEIRGVGNLLGAEQSGQM-EAIGFDLYMEMLEEAIREIRGQEIPKVEDTQIDLN---------LTAFIPADYIPDIDQKMSAYRAVAAAKSKEELTQIAAEWSDRY 1142
BLAST of NO21G02450 vs. NCBI_GenBank
Match: WP_039724684.1 (transcription-repair coupling factor [Lyngbya confervoides] >KIF20451.1 transcription-repair coupling factor [Aphanocapsa montana BDHKU210001] >KIF42333.1 transcription-repair coupling factor [Lyngbya confervoides BDU141951]) HSP 1 Score: 355.1 bits (910), Expect = 4.700e-94 Identity = 216/509 (42.44%), Postives = 290/509 (56.97%), Query Frame = 0 Query: 1 MDRLVLGDVGFGKTEVAVRAIHRAVCNHRQCVLLAPTTILAAQHYARLCARF-PW-MNIEMMRGSDTASKAKDVRARLKEGVIQVVVGTTSVTGKNVRFKNLGLVVVDEEQRLGVSQKEKLKALAKGVDVLTLSATPIPRTLQMALSGMREVSHIDTAPSSRKPVFTHIEAWDPAKVERALRAELARGGQAFYVVPRIRDIPHHVDMLHDLLKGARKDGKDATICVAHGALPAGEAEEVLVRFAMREGDVLVATTLIENGLDVPTVNTVVVAQAHKLGLASLYQLRGRVGRSDKQAFAYFFHPRAVKGEEGEKGGREIAAEEKGRERKTSATHTQWDDXXXXXXXTDNAEILSTSLSSDPFLRKRQIALLGGRVMTSEAVQRLAALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYMDMLAEALLKVRGTAIEPTPFTDINLMDGQPTNQVLSASFLPSSFFPNEETRMAEVEEARLAPTFKHL----RDLHKRW 504 MDRLV GDVGFGKTEVAVRAI +A+ +H+Q +LAPTTIL QHY L RF P+ + + ++ TA + KD+ RLK G + VVVGT + GK+V+FK+LGL+VVDEEQR GV+QKEK+K+L VDVLTLSATPIPRTL MALSG+RE+S I T P SR+P+ TH+ +DP + A R EL RGGQ FYVVPR+ I L + + GAR I +AHG + GE E ++ F+ E D+LV TT+IE+GLD+P VNT+++ AHK GL+ LYQLRGRVGRS QA A+ F+PR + +T +A QRL A++E++ LG G QLA D+ IRG G +LG +QSG VG+D+YMDML E + ++RG I T ++L +F+P+ + + E +M+ A + + L DL+ R+ Sbjct: 657 MDRLVCGDVGFGKTEVAVRAIFKAINSHKQVAMLAPTTILTQQHYHTLKERFAPYPIQVGLLNRFRTAQEKKDILQRLKTGELDVVVGTHQLLGKSVQFKDLGLMVVDEEQRFGVNQKEKIKSLKTEVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLSPYDPEAIRSAARQELDRGGQIFYVVPRVEGIEDVSARLREWIPGAR-------IMIAHGQMQEGELESTMLGFSSGEADILVCTTIIESGLDIPRVNTILIEDAHKFGLSQLYQLRGRVGRSGIQAHAWLFYPRQ-------------------------------------------------------------------QTLTPKARQRLRAIQEFAQ-LGSGYQLAMRDMEIRGVGNLLGVQQSGQM-DAVGFDLYMDMLEEEIAEIRGQEIPKVDDTQVDLK---------VTAFIPNDYIDDTEQKMSAYRALAAADSKRELAQVAADLNDRY 1080
BLAST of NO21G02450 vs. NCBI_GenBank
Match: WP_014276400.1 (transcription-repair coupling factor [Arthrospira platensis] >BAI92237.1 transcriptional-repair coupling factor [Arthrospira platensis NIES-39]) HSP 1 Score: 354.4 bits (908), Expect = 8.000e-94 Identity = 227/581 (39.07%), Postives = 321/581 (55.25%), Query Frame = 0 Query: 1 MDRLVLGDVGFGKTEVAVRAIHRAVCNHRQCVLLAPTTILAAQHYARLCARF-PW-MNIEMMRGSDTASKAKDVRARLKEGVIQVVVGTTSVTGKNVRFKNLGLVVVDEEQRLGVSQKEKLKALAKGVDVLTLSATPIPRTLQMALSGMREVSHIDTAPSSRKPVFTHIEAWDPAKVERALRAELARGGQAFYVVPRIRDIPHHVDMLHDLLKGARKDGKDATICVAHGALPAGEAEEVLVRFAMREGDVLVATTLIENGLDVPTVNTVVVAQAHKLGLASLYQLRGRVGRSDKQAFAYFFHPRAVKGEEGEKGGREIAAEEKGRERKTSATHTQWDDXXXXXXXTDNAEILSTSLSSDPFLRKRQIALLGGRVMTSEAVQRLAALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYMDMLAEALLKVRGTAIEPTPFTDINLMDGQPTNQVLSASFLPSSFFPNEETRMAEVEEARLAPTFKHLRDLHKRWRVTYHSSSPHTPLPRAVRMFFIRLNLLLACRILSGETLALIKPTEDSRPRLILVTRNLLSFHWDALSSALPSSLSP 580 MDRLV GDVGFGKTEVA+RAI +AV +Q LAPTTIL QHY L RF P+ + I ++ +AS+ K ++ +L G I ++VGT SV K+++F++LGL+VVDEEQR GV+QKEK+KAL VDVLTL+ATPIPRTL MALSG+RE+S I T P SR+P+ TH+ + + A+ EL RGGQ FYVVPRI I + +++ AR + +AHG + AGE E +++ F+ E D+LV TT+IE+GLD+P VNT++V AHK GL LYQLRGRVGR+ QA A+ F+P +KG+ G +T +AV+RL A+KE++ LG G QLA DL IRGAG++LG +QSG + +G+D+Y +ML EA+ +VRG I T ++L + +F+PS + + + +M+ + L + + W Y + P + +R+ ++ +I A IKP +DS+ +IL T + W+ L LP L P Sbjct: 640 MDRLVCGDVGFGKTEVAIRAIFKAVTGGKQVAFLAPTTILTQQHYHTLKERFAPYPIEIGLLNRFRSASEKKLIQQKLITGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIKTHLGPLNQETIRAAICQELDRGGQVFYVVPRIEGIEEKSAAIREMVPSAR-------LAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPRVNTILVEDAHKFGLGQLYQLRGRVGRAGAQAHAWLFYP--IKGD-------------------------------------------------------------GQAALTEDAVKRLRAIKEFTQ-LGSGYQLAMRDLEIRGAGDILGAQQSGQM-NAIGFDLYTEMLQEAIQEVRGQEIPQVDDTQVDL---------ILTAFIPSDYITDLDQKMSAYRAVASCQDSEELSRIEEDWSDRY--GTIPAPAQQLLRVMELK-------QIAKKLGFARIKP-DDSKQNIILET-PMEEPAWNLLKQNLPEHLQP 1128
BLAST of NO21G02450 vs. NCBI_GenBank
Match: WP_035738093.1 (transcription-repair coupling factor [Arthrospira platensis] >KDR54146.1 transcription-repair coupling factor [Arthrospira platensis str. Paraca] >AMW29786.1 transcription-repair coupling factor [Arthrospira platensis YZ]) HSP 1 Score: 354.4 bits (908), Expect = 8.000e-94 Identity = 227/581 (39.07%), Postives = 321/581 (55.25%), Query Frame = 0 Query: 1 MDRLVLGDVGFGKTEVAVRAIHRAVCNHRQCVLLAPTTILAAQHYARLCARF-PW-MNIEMMRGSDTASKAKDVRARLKEGVIQVVVGTTSVTGKNVRFKNLGLVVVDEEQRLGVSQKEKLKALAKGVDVLTLSATPIPRTLQMALSGMREVSHIDTAPSSRKPVFTHIEAWDPAKVERALRAELARGGQAFYVVPRIRDIPHHVDMLHDLLKGARKDGKDATICVAHGALPAGEAEEVLVRFAMREGDVLVATTLIENGLDVPTVNTVVVAQAHKLGLASLYQLRGRVGRSDKQAFAYFFHPRAVKGEEGEKGGREIAAEEKGRERKTSATHTQWDDXXXXXXXTDNAEILSTSLSSDPFLRKRQIALLGGRVMTSEAVQRLAALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYMDMLAEALLKVRGTAIEPTPFTDINLMDGQPTNQVLSASFLPSSFFPNEETRMAEVEEARLAPTFKHLRDLHKRWRVTYHSSSPHTPLPRAVRMFFIRLNLLLACRILSGETLALIKPTEDSRPRLILVTRNLLSFHWDALSSALPSSLSP 580 MDRLV GDVGFGKTEVA+RAI +AV +Q LAPTTIL QHY L RF P+ + I ++ +AS+ K ++ +L G I ++VGT SV K+++F++LGL+VVDEEQR GV+QKEK+KAL VDVLTL+ATPIPRTL MALSG+RE+S I T P SR+P+ TH+ + + A+ EL RGGQ FYVVPRI I + +++ AR + +AHG + AGE E +++ F+ E D+LV TT+IE+GLD+P VNT++V AHK GL LYQLRGRVGR+ QA A+ F+P +KG+ G +T +AV+RL A+KE++ LG G QLA DL IRGAG++LG +QSG + +G+D+Y +ML EA+ +VRG I T ++L + +F+PS + + + +M+ + L + + W Y + P + +R+ ++ +I A IKP +DS+ +IL T + W+ L LP L P Sbjct: 640 MDRLVCGDVGFGKTEVAIRAIFKAVTGGKQVAFLAPTTILTQQHYHTLKERFAPYPIEIGLLNRFRSASEKKLIQQKLITGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIKTHLGPLNQETIRAAICQELDRGGQVFYVVPRIEGIEEKSAAIREMVPSAR-------LAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPRVNTILVEDAHKFGLGQLYQLRGRVGRAGAQAHAWLFYP--IKGD-------------------------------------------------------------GQAALTEDAVKRLRAIKEFTQ-LGSGYQLAMRDLEIRGAGDILGAQQSGQM-NAIGFDLYTEMLQEAIQEVRGQEIPQVDDTQVDL---------ILTAFIPSDYITDLDQKMSAYRAVASCQDSEELSRIEEDWSDRY--GTIPAPAQQLLRVMELK-------QIAKKLGFARIKP-DDSKQNIILET-PMEEPAWNLLKQNLPEHLQP 1128
BLAST of NO21G02450 vs. NCBI_GenBank
Match: WP_068515029.1 (transcription-repair coupling factor [Leptolyngbya sp. O-77] >BAU44754.1 Transcription-repair-coupling factor [Leptolyngbya sp. O-77]) HSP 1 Score: 354.4 bits (908), Expect = 8.000e-94 Identity = 227/581 (39.07%), Postives = 313/581 (53.87%), Query Frame = 0 Query: 1 MDRLVLGDVGFGKTEVAVRAIHRAVCNHRQCVLLAPTTILAAQHYARLCARF-PW-MNIEMMRGSDTASKAKDVRARLKEGVIQVVVGTTSVTGKNVRFKNLGLVVVDEEQRLGVSQKEKLKALAKGVDVLTLSATPIPRTLQMALSGMREVSHIDTAPSSRKPVFTHIEAWDPAKVERALRAELARGGQAFYVVPRIRDIPHHVDMLHDLLKGARKDGKDATICVAHGALPAGEAEEVLVRFAMREGDVLVATTLIENGLDVPTVNTVVVAQAHKLGLASLYQLRGRVGRSDKQAFAYFFHPRAVKGEEGEKGGREIAAEEKGRERKTSATHTQWDDXXXXXXXTDNAEILSTSLSSDPFLRKRQIALLGGRVMTSEAVQRLAALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYMDMLAEALLKVRGTAIEPTPFTDINLMDGQPTNQVLSASFLPSSFFPNEETRMAEVEEARLAPTFKHLRDLHKRWRVTYHSSSPHTPLPRAVRMFFIRLNLLLACRILSGETLALIKPTEDSRPRLILVTRNLLSFHWDALSSALPSSLSP 580 MDRLV GDVGFGKTEVA+RA+ +A+ +Q LLAPTTIL QHY L RF P+ + + ++ T ++ +D+ RL G + VVVGT + GK V+FK+LGL+VVDEEQR GV+QKEK+K L VDVLTLSATPIPRTL MALSG+RE+S I T P SR+P+ TH+ +DP V A+R EL RGGQ FYVVPR+ I L +++ G R + +AHG + GE E ++ F E D+LV TT+IE+GLD+P VNT+++ A K GL+ LYQLRGRVGR+ QA A+ F+P+ + +T A QRL A++E++ LG G QLA D+ IRG G +LG EQSG +G+D+YM+ML EA+ ++RG I T I+L +F+P+ + P+ + +M+ A T + L ++ W S + P+P A F + L + L + IKP D + ++L T + W+ L LPS L P Sbjct: 655 MDRLVCGDVGFGKTEVAIRAVFKAITAGKQVALLAPTTILTQQHYHTLKERFAPYPIQVGLLNRFRTNAEKQDILKRLASGELDVVVGTHQLLGKGVQFKDLGLLVVDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLSPYDPEMVRTAIRQELDRGGQVFYVVPRVEGIEETAAKLREMVPGVR-------MAIAHGQMQEGELEATMLTFNNGEADILVCTTIIESGLDIPRVNTILIEDAQKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQSQ-------------------------------------------------------------------LTETARQRLRAIQEFTQ-LGSGYQLAMRDMEIRGVGNLLGAEQSGQM-DAIGFDLYMEMLEEAIKEIRGQEIPQVDDTQIDLR---------LTAFIPADYIPDLDQKMSAYRAVAAAQTKQELTEIAVDW------SDRYGPIPPAALQLFRVVELKQIAKKLG---FSRIKP--DGKQHILLET-PMEEPAWNLLKDKLPSHLQP 1138
BLAST of NO21G02450 vs. NCBI_GenBank
Match: WP_036001530.1 (transcription-repair coupling factor [[Leptolyngbya] sp. JSC-1]) HSP 1 Score: 353.6 bits (906), Expect = 1.400e-93 Identity = 215/514 (41.83%), Postives = 290/514 (56.42%), Query Frame = 0 Query: 1 MDRLVLGDVGFGKTEVAVRAIHRAVCNHRQCVLLAPTTILAAQHYARLCARF-PW-MNIEMMRGSDTASKAKDVRARLKEGVIQVVVGTTSVTGKNVRFKNLGLVVVDEEQRLGVSQKEKLKALAKGVDVLTLSATPIPRTLQMALSGMREVSHIDTAPSSRKPVFTHIEAWDPAKVERALRAELARGGQAFYVVPRIRDIPHHVDMLHDLLKGARKDGKDATICVAHGALPAGEAEEVLVRFAMREGDVLVATTLIENGLDVPTVNTVVVAQAHKLGLASLYQLRGRVGRSDKQAFAYFFHPRAVKGEEGEKGGREIAAEEKGRERKTSATHTQWDDXXXXXXXTDNAEILSTSLSSDPFLRKRQIALLGGRVMTSEAVQRLAALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYMDMLAEALLKVRGTAIEPTPFTDINLMDGQPTNQVLSASFLPSSFFPNEETRMAEVEEARLAPTFKHLRDLHKRWRVTYHSSSP 513 MDRLV GDVGFGKTEVA+RAI +AV +Q LLAPTTIL QHY L RF P+ + + ++ TA + K+++ RL G + VVVGT + GK V+FK+LGL+VVDEEQR GV+QKEK+K+L VDVLTLSATPIPRTL MALSG+RE+S I T P SR+P+ TH+ +DP V A+R EL RGGQ FYVVPR+ I L +++ GAR I +AHG + GE E ++ F+ E D+LV TT+IE+GLD+P VNT+++ A K GLA LYQLRGRVGR+ QA A+ F+P+ + +T A QRL A++E++ LG G QLA D+ IRG G +LG EQSG +G+D+YM+ML EA+ ++RG I T I+L +F+P+ + P+ + +M+ A T + L ++ W Y + P Sbjct: 648 MDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPIQVGLLNRFRTAEERKEIQQRLATGELDVVVGTHQLLGKGVQFKDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLSPYDPEVVRTAIRQELDRGGQVFYVVPRVEGIEEVSARLREMIPGAR-------IEIAHGQMMEGELEATMLTFSNGEADILVCTTIIESGLDIPRVNTILIEDAQKFGLAQLYQLRGRVGRAGIQAHAWLFYPKQSQ-------------------------------------------------------------------LTDTARQRLRAIQEFTQ-LGSGYQLAVRDMEIRGVGNLLGAEQSGQM-DAIGFDLYMEMLEEAIKEIRGQEIPQVDDTQIDLN---------LTAFIPADYIPDLDQKMSAYRAVASAQTKRELAEIAADWNDRYGAMPP 1076
BLAST of NO21G02450 vs. NCBI_GenBank
Match: WP_102150238.1 (transcription-repair coupling factor [Fischerella thermalis] >PMB52466.1 transcription-repair coupling factor [Fischerella thermalis CCMEE 5201]) HSP 1 Score: 353.6 bits (906), Expect = 1.400e-93 Identity = 222/579 (38.34%), Postives = 315/579 (54.40%), Query Frame = 0 Query: 1 MDRLVLGDVGFGKTEVAVRAIHRAVCNHRQCVLLAPTTILAAQHYARLCARF-PW-MNIEMMRGSDTASKAKDVRARLKEGVIQVVVGTTSVTGKNVRFKNLGLVVVDEEQRLGVSQKEKLKALAKGVDVLTLSATPIPRTLQMALSGMREVSHIDTAPSSRKPVFTHIEAWDPAKVERALRAELARGGQAFYVVPRIRDIPHHVDMLHDLLKGARKDGKDATICVAHGALPAGEAEEVLVRFAMREGDVLVATTLIENGLDVPTVNTVVVAQAHKLGLASLYQLRGRVGRSDKQAFAYFFHPRAVKGEEGEKGGREIAAEEKGRERKTSATHTQWDDXXXXXXXTDNAEILSTSLSSDPFLRKRQIALLGGRVMTSEAVQRLAALKEYSHLLGMGPQLAKADLAIRGAGEVLGYEQSGDKGSGVGYDVYMDMLAEALLKVRGTAIEPTPFTDINLMDGQPTNQVLSASFLPSSFFPNEETRMAEVEEARLAPTFKHLRDLHKRWRVTYHSSSPHTPLPRAVRMFFIRLNLLLACRILSGETLALIKPTEDSRPRLILVTRNLLSFHWDALSSALPSSL 578 MDRLV GDVGFGKTEVA+RAI +AV +Q LLAPTTIL QHY L RF P+ +NI ++ + + +D++ RL G + VVVGT + K+V FK+LG++VVDEEQR GV+QKEK+K L VDVLTLSATPIPRTL M+LSG+RE+S I T P SR+P+ TH+ +P V A+R EL RGGQ FYVVPR+ I D L +++ GA+ I +AHG + AGE E +++ F+ E D+LV TT+IE+GLD+P VNT+++ AH+ GLA LYQLRGRVGR+ QA A+ F+P+ R ++ A QRL A++E++ LG G QLA D+ IRG G +LG EQSG +G+D+YM+ML EA+ ++RG I T I+L +F+P+ + P+ + +M+ A + + L + W Y + P P + + + L L + L + +++ ++L T + W+ L+ LP +L Sbjct: 668 MDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRSPQERRDIQKRLTTGELDVVVGTHQLLSKDVNFKDLGMLVVDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLAPMNPETVRSAIRQELDRGGQVFYVVPRVEGIEERTDELREMIPGAK-------IAIAHGQMEAGELESIMLSFSSAEADILVCTTIIESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQ-------------------------------------------------------------------RTLSDAARQRLRAIQEFTQ-LGSGYQLAVRDMEIRGVGNLLGAEQSGQM-EAIGFDLYMEMLEEAIREIRGQEIPKVEDTQIDLN---------LTAFVPADYIPDIDQKMSAYRAVAAAKSQEELTQIAAEWSDRYGT----IPKPASQLLRVMELKQL-------AKKLGFSRIKPEAKQHVVLET-PMEEPAWNLLAGNLPENL 1149 The following BLAST results are available for this feature:
BLAST of NO21G02450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G02450 ID=NO21G02450|Name=NO21G02450|organism=Nannochloropsis oceanica|type=gene|length=5106bpback to top protein sequence of NO21G02450.1 >NO21G02450.1-protein ID=NO21G02450.1-protein|Name=NO21G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=682bpback to top Synonyms
Publications
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