NO21G02420.3, NO21G02420.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO21G02420.3
Unique Name	NO21G02420.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2229
Alignment location	chr21:731625..735484 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr21	genome	chr21:731625..735484 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO21G02420.3 vs.
Match: EWM29475.1 (hypothetical protein Naga_100128g9 [Nannochloropsis gaditana])

HSP 1 Score: 427.6 bits (1098), Expect = 5.100e-116
Identity = 202/309 (65.37%), Postives = 238/309 (77.02%), Query Frame = 0

Query:  152 MESRYADLAVAKSDYPFCAWDATTDESIYTPLLLDPNAVYQPQVLSFAAHPDRVYKVSAAFPKVIYFSYQSYTLRGLPLTSLSDRHIWPSSGKNPYREEAREDEMGTYDIHVTREGNKGWANEVRGLREDRTNGTRTPYTRVVDFLENLSILMLRFYTPEQPPSVWGGVAPPVITYSDDDGKNWTELKPCTDATRYLFNKAMKQIGWSGYELHDLFLHSQWYRLRSCDLLGVPEADTPTLLPSINLDGPGSASYVPYANYDSSYLHWCTDGRQLGKDFVMVIEGTAPLTATGLFEGTRQVWNVSSYSVR 461
            MESRYADLA+A S+YPFCAWDATTDESIYTPLLLDPNAVYQPQ+LSFAAHP RVYK+SA+FP+V+YFSY++Y+LRG PLTSL D  I PS GKNPYREE  E+  GTY+I+VTR+GNKGW NEVRGL ED TN T+  ++RV+DF++NLS++MLR YT EQPPSVWGGV  PVI+Y+DD G+ W EL+PC+D TRY FN+AM+QIGW+ Y+   L  HSQWYRLRSC LL   EAD P L P +N+                          QLG +FVMVIEGTAPLTATGLFEG R VWNV++YS R
Sbjct:    1 MESRYADLAIASSEYPFCAWDATTDESIYTPLLLDPNAVYQPQLLSFAAHPHRVYKISASFPRVVYFSYETYSLRGHPLTSLPDLRIDPSWGKNPYREETTEEGAGTYEIYVTRDGNKGWPNEVRGLSEDHTNATQAAFSRVMDFVDNLSVVMLRLYTTEQPPSVWGGVDRPVISYTDDLGQTWKELQPCSDTTRYQFNRAMRQIGWTVYDFRYLIYHSQWYRLRSCHLLSKREADHPALFPDVNV--------------------------QLGGNFVMVIEGTAPLTATGLFEGPRPVWNVTNYSTR 283

The following BLAST results are available for this feature:

BLAST of NO21G02420.3 vs.

BLAST of NO21G02420.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29475.1	5.100e-116	65.37	hypothetical protein Naga_100128g9 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G02420	NO21G02420	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO21G02420.3	NO21G02420.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO21G02420.3.cds1	NO21G02420.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02420.3.cds2	NO21G02420.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02420.3.cds3	NO21G02420.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02420.3.cds4	NO21G02420.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02420.3.cds5	NO21G02420.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02420.3.cds6	NO21G02420.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02420.3.cds7	NO21G02420.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02420.3.cds8	NO21G02420.3.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr21:731625..735484-
coding sequence from alignment at chr21:731625..735484-

mRNA sequence

>NO21G02420.3 ID=NO21G02420.3|Name=NO21G02420.3|organism=Nannochloropsis oceanica|type=mRNA|length=2229bp
GCCCATTGTGGGGCGGTCGTCTCCCGTCATATGGCTGCAGGTTAGCCAGC
AAGCGTATTCCTTATCCCTGATGCAATTTCACACGTGATTTGTTAAGGAC
ATATTTCCATCCCTACGTATACATCTATATGACCTCACTGACTGATCTGT
TTTCTCCTCTCACACATCGCACGACATGCAAATTTCTCTTTGCCAAGCCG
CGAGAATTCATAAGATACCCATGTCATCGTCTCGTCAGAAAAGGCTGCGG
CCGCGGGCCTGGGCATGCTCCTGCTTTCTTATCCTAGATCACCTCGTGGT
TTGTTCGTCATCCCCAGTGTCTTTGTCGGGCACCCCCGCTTTCATGAAGG
AAGAGATGGACATATCTTTCATTCCTTCATCATCTCTCCTCGACCTAACC
CACGAATCGAAAGCTGCTTACCTCTCCTTTCCCCCCAAGCTCTCTCCTTG
GGAAGATGATCCTGTCGTACTCGTCACTGGGCCTAGCGATGACAACAGCC
GAGAAGAAGATAGAAACACTATCGCTATCGACCAAGACCTTCAATTTAAT
AAGCACGACGACGACAGCAGCCCTTCCATTCCGCCTGATGACCCTAACTC
CTCCCGCTCCTGGCGCTCACGCTGGCGAATGGAATCGCGCTACGCGGATT
TGGCCGTGGCGAAGAGTGACTACCCTTTTTGCGCCTGGGATGCCACAACG
GACGAAAGTATTTACACGCCCTTGCTGCTGGATCCAAATGCTGTGTACCA
GCCGCAAGTGCTTTCCTTTGCTGCCCATCCGGATAGGGTGTACAAGGTCT
CGGCGGCGTTCCCTAAGGTGATTTACTTTTCCTACCAGAGCTACACCTTG
AGAGGGCTTCCTCTCACCTCCCTATCCGACCGGCATATCTGGCCAAGCAG
CGGGAAGAACCCGTACAGGGAGGAAGCGAGGGAGGACGAGATGGGCACGT
ACGACATTCACGTGACGCGCGAAGGAAACAAGGGCTGGGCGAACGAGGTT
CGGGGTTTGCGCGAAGACAGAACCAACGGCACTCGGACGCCCTACACTCG
CGTAGTGGACTTCCTTGAGAATCTCTCCATCCTCATGCTTCGATTCTACA
CACCCGAGCAGCCCCCCAGTGTCTGGGGAGGGGTGGCCCCACCTGTGATT
ACATACAGCGATGACGATGGCAAAAACTGGACGGAACTCAAGCCCTGCAC
GGATGCAACCCGCTACTTATTTAACAAGGCCATGAAACAGATAGGCTGGA
GCGGCTACGAGCTCCATGATTTATTCCTCCACTCTCAATGGTACCGCCTG
CGTTCGTGTGATTTATTGGGCGTGCCGGAAGCCGACACCCCGACGCTCCT
CCCCAGCATCAATCTCGACGGGCCCGGCAGTGCGTCTTACGTCCCGTACG
CCAACTACGATTCTTCATATCTGCATTGGTGCACGGATGGACGCCAACTG
GGCAAAGATTTTGTTATGGTCATCGAAGGAACAGCGCCTTTGACGGCCAC
TGGTCTTTTTGAGGGGACAAGGCAAGTGTGGAATGTGTCAAGTTACAGCG
TCAGGTAGGGAGGACGCAGGGAACGACGGAGAAGGGTCAAAATACGCGAT
ATCGTCATCTGCCTTCCTCTCTCCCTTCTTCCCAACCCCCCGTCGTCCTC
ACTGCCTAAGACCTGCATCTGCTCAAGACCAGCTCCTCTACATTTGTCCA
TGGATCATCCACAGCTTAACTCCTCTCTCCCTTCCTTCCTTCCTTCCTCC
CTTCCTCCCTCCCTTCCATCCTCCCTCCCTGCCTCCCTCCCTCTGTCCTT
TCCATATTAAGGTACTGGGGATTCGCCGCCGCCGACATTTTTCTCCCCGG
GCCGACCTACAGCAGCATCACGGCCACGGAGATGGAGGCATTTTATGGAG
GGGAAGGGTGGGACCGACGCTACAAGATCCTGGGGGCACGCTCCAGAGAA
GTGGCAAAGGCGTGTGGTCTCGACGACCCCGGAGCACTCTTGCTTCCCTT
TCGGAACGACAAGCTCAACAACAATCCACCTGCCATCCCTGCCGTCATCG
AGAGAGAGATGCTTCCCACTCATATCGCCACCAACCAACCTCCGGAAGTT
CAGTCAATCGATTACGTGACGGCTAATTGCAAAAAGGTAGGTAAGGAGGG
ACGGAGAGAGGAGGGAGGGAAGGAGAGGAGAAAAGGAGGGAGGGACTAGA
CATGCACTTGATCGTTATCCTAATTTCTC

protein sequence of NO21G02420.3

>NO21G02420.3-protein ID=NO21G02420.3-protein|Name=NO21G02420.3|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MQISLCQAARIHKIPMSSSRQKRLRPRAWACSCFLILDHLVVCSSSPVSL
SGTPAFMKEEMDISFIPSSSLLDLTHESKAAYLSFPPKLSPWEDDPVVLV
TGPSDDNSREEDRNTIAIDQDLQFNKHDDDSSPSIPPDDPNSSRSWRSRW
RMESRYADLAVAKSDYPFCAWDATTDESIYTPLLLDPNAVYQPQVLSFAA
HPDRVYKVSAAFPKVIYFSYQSYTLRGLPLTSLSDRHIWPSSGKNPYREE
AREDEMGTYDIHVTREGNKGWANEVRGLREDRTNGTRTPYTRVVDFLENL
SILMLRFYTPEQPPSVWGGVAPPVITYSDDDGKNWTELKPCTDATRYLFN
KAMKQIGWSGYELHDLFLHSQWYRLRSCDLLGVPEADTPTLLPSINLDGP
GSASYVPYANYDSSYLHWCTDGRQLGKDFVMVIEGTAPLTATGLFEGTRQ
VWNVSSYSVR*

mRNA from alignment at chr21:731625..735484-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO21G02420.3 ID=NO21G02420.3|Name=NO21G02420.3|organism=Nannochloropsis oceanica|type=mRNA|length=3860bp|location=Sequence derived from alignment at chr21:731625..735484- (Nannochloropsis oceanica)
GCCCATTGTGGGGCGGTCGTCTCCCGTCATATGGCTGCAGGTTAGCCAGC
AAGCGTATTCCTTATCCCTGATGCAATTTCACACGTGATTTGTTAAGGAC
ATATTTCCATCCCTACGTATACATCTATATGACCTCACTGACTGATCTGT
TTTCTCCTCTCACACATCGCACGACATGCAAATTTCTCTTTGCCAAGCCG
CGAGAATTCATAAGATACCCATGTCATCGTCTCGTCAGAAAAGGCTGCGG
CCGCGGGCCTGGGCATGCTCCTGCTTTCTTATCCTAGATCACCTCGTGGT
TTGTTCGTCATCCCCAGTGTCTTTGTCGGGGTGAGTGTGGAAAAGAAGGA
GAACGAAAAAGAACGGGATATGCACCTCTCTCCTTCTTCGCCTTGATTCA
TACCTCGACTTAACCCTACATAAACAGCACCCCCGCTTTCATGAAGGAAG
AGATGGACATATCTTTCATTCCTTCATCATCTCTCCTCGACCTAACCCAC
GAATCGAAAGCTGCTTACCTCTCCTTTCCCCCCAAGCTCTCTCCTTGGGA
AGATGATCCTGTCGTACTCGTCACTGGGCCTAGCGATGACAACAGCCGAG
AAGAAGATAGAAACACTATCGCTATCGACCAAGACCTTCAATTTAATAAG
CACGACGACGACAGCAGCCCTTCCATTCCGCCTGATGACCCTAACTCCTC
CCGCTCCTGGCGCTCACGCTGGCGAATGGAATCGCGCTACGCGGATTTGG
CCGTGGCGAAGAGTGACTACCCTTTTTGCGCCTGGGATGCCACAACGGAC
GAAAGTATTTACACGCCCTTGCTGCTGGATCCAAATGCTGTGTACCAGCC
GCAAGTGCTTTCCTTTGCTGCCCATCCGGATAGGGTGTACAAGGTAGCAA
CGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGGAGGGAGTGGAGGGAGAGAGAAGTGTGGGTTTAAGATAAAAA
AATTGCTTTTCCGAGCTTCTCTAAATGGAGTGACAACCCACATCATGTCC
GCGAGCTGCGAATGGTGCTGTTCGCCTCCATCTTCAATCCGCCCCCTGAC
CCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCTCCCA
GGTCTCGGCGGCGTTCCCTAAGGTGATTTACTTTTCCTACCAGAGCTACA
CCTTGAGAGGGCTTCCTCTCACCTCCCTATCCGACCGGCATATCTGGCCA
AGCAGCGGGAAGAACCCGTACAGGGAGGAAGCGAGGGAGGACGAGATGGG
CACGTACGACATTCACGTGACGCGCGAAGGTAGGTAGGCATGTAGGGAGG
GAGGGAGGGAGGGAGGGTGGGAATTGGGAAGAAAAGTATAAAAAGCAAGG
GGAGTGACGACGAAGGGTGGGAAGTGCGGTATCGATGGGAGGCGCGGGGT
CAGAGAGGGACAGAAGGAGGGAGGAAAAGAAGCCCCTTGCCATCTTGAAG
CTTACTCCACAAACTCATTTCGCGCTCTTTCTTCTTCCTTCCCTCCCTCC
CTCTCTCCCTTCCTTCTTCCCCCTCCTTATCTCCTCCCCCCCTGAAGGAA
ACAAGGGCTGGGCGAACGAGGTTCGGGGTTTGCGCGAAGACAGAACCAAC
GGCACTCGGACGCCCTACACTCGCGTAGTGGTAGGGGGGGAGGGAGAAAG
GGAGGGAGGTTGAGAACGATTCCCAAGGGGTAGCATACGTACTTAAGGGC
TTAAGAGTGATGAGCTCCCACCAATTCTGTCCTTGGCATTCAACGCTCTT
ATCTCTTTGATCTCATGCCCTCTTCTCCCGTCCCTCCTTTCCTCCCTCCT
CCCCTCCCTCCCTCCCTACTTGCCGTTGCACGTCATCGCAGGCTGGACCC
GCTTTTTTCGGATACTGACCATTCCTCCCTTTCTATCTCCCTCCCTCCCT
CCCTCACTTCCTCCATTAGGACTTCCTTGAGAATCTCTCCATCCTCATGC
TTCGATTCTACACACCCGAGCAGCCCCCCAGTGTCTGGGGAGGGGTGGCC
CCACCTGTGATTACATACAGCGGTGAGGAGGGTGATGGGGAGGGAGGGAG
GGAGGAGAGGAGGGAAGAACAGCCTGCGCCTCTGCAATGAGGAGTGAGGG
AGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGAACGGCATGTGCCACACAC
ACATTTTGATACCCTCAGTACGTGACACTTACTACTCTCCCTCCATCGCT
CCTTCTCTCCCCTTTTCCCACCCGCAGATGACGATGGCAAAAACTGGACG
GAACTCAAGCCCTGCACGGATGCAACCCGCTACTTATTTAACAAGGCCAT
GAAACAGATAGGTATGAAGGGAGGGAGGGAGGGAAGGAAGGAGGGGGGAG
GTGGGGGGCGCATTGAAAACGCACAATTGTCTGGCTCCTCGCCACACCGA
CCTCTCATGGTCAATCAACGCCCTCCCTTCCTCCTTTCCTCCCTCCTTCC
CTCCTCTCTCTCTTAAGGACTGAAGCGGCCGTGAGTCCTCCTATCGCTCT
GATTAGCACCGTCATGGTTGCCGTACCTTGCTCACCCTCCCTCCCTCCCC
CACCTCCCACATTCCTCAGGCTGGAGCGGCTACGAGCTCCATGATTTATT
CCTCCACTCTCAATGGTACCGCCTGCGTTCGTGTGATTTATTGGGCGTGC
CGGAAGCCGACACCCCGACGCTCCTCCCCAGCATCAATCTCGACGGGCCC
GGCAGTGCGTCTTACGTCCCGTACGCCAACTACGATTCTTCATATCTGCA
TTGGTGCACGGATGGACGCCAAGTACGTGTGTATGGGTGTTTGTGGGACG
TTTTCTTCTAGAAGCTTTTTATTGCCCTTCCAGCTCCCTTTTGTGTGCTC
CTGGATTGGGGTCGCGCTGTTTTTGACCGCCTTCCTCCCCCTTCCTTCCC
TCCCCCTTTCCTTGTTGCCTTCCAGCTGGGCAAAGATTTTGTTATGGTCA
TCGAAGGAACAGCGCCTTTGACGGCCACTGGTCTTTTTGAGGGGACAAGG
CAAGTGTGGAATGTGTCAAGTTACAGCGTCAGGTAGGGAGGACGCAGGGA
ACGACGGAGAAGGGTCAAAATACGCGATATCGTCATCTGCCTTCCTCTCT
CCCTTCTTCCCAACCCCCCGTCGTCCTCACTGCCTAAGACCTGCATCTGC
TCAAGACCAGCTCCTCTACATTTGTCCATGGATCATCCACAGCTTAACTC
CTCTCTCCCTTCCTTCCTTCCTTCCTCCCTTCCTCCCTCCCTTCCATCCT
CCCTCCCTGCCTCCCTCCCTCTGTCCTTTCCATATTAAGGTACTGGGGAT
TCGCCGCCGCCGACATTTTTCTCCCCGGGCCGACCTACAGCAGCATCACG
GCCACGGAGATGGAGGCATTTTATGGAGGGGAAGGGTGGGACCGACGCTA
CAAGATCCTGGGGGCACGCTCCAGAGAAGTGGCAAAGGTACGAATGGTCT
CGCCCCTCCTTCCCCCCCTCGTTCCCTGCGTCTCTTTTATCCCCCATTTC
ACTTCCTCCCCTCCCTTCCGCTCCAATTTTTCCCTTTTAGGCGTGTGGTC
TCGACGACCCCGGAGCACTCTTGCTTCCCTTTCGGAACGACAAGCTCAAC
AACAATCCACCTGCCATCCCTGCCGTCATCGAGAGAGAGATGCTTCCCAC
TCATATCGCCACCAACCAACCTCCGGAAGTTCAGTCAATCGATTACGTGA
CGGCTAATTGCAAAAAGGTAGGTAAGGAGGGACGGAGAGAGGAGGGAGGG
AAGGAGAGGAGAAAAGGAGGGAGGGACTAGACATGCACTTGATCGTTATC
CTAATTTCTC

Coding sequence (CDS) from alignment at chr21:731625..735484-

>NO21G02420.3 ID=NO21G02420.3|Name=NO21G02420.3|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr21:731625..735484- (Nannochloropsis oceanica)
ATGCAAATTTCTCTTTGCCAAGCCGCGAGAATTCATAAGATACCCATGTC
ATCGTCTCGTCAGAAAAGGCTGCGGCCGCGGGCCTGGGCATGCTCCTGCT
TTCTTATCCTAGATCACCTCGTGGTTTGTTCGTCATCCCCAGTGTCTTTG
TCGGGCACCCCCGCTTTCATGAAGGAAGAGATGGACATATCTTTCATTCC
TTCATCATCTCTCCTCGACCTAACCCACGAATCGAAAGCTGCTTACCTCT
CCTTTCCCCCCAAGCTCTCTCCTTGGGAAGATGATCCTGTCGTACTCGTC
ACTGGGCCTAGCGATGACAACAGCCGAGAAGAAGATAGAAACACTATCGC
TATCGACCAAGACCTTCAATTTAATAAGCACGACGACGACAGCAGCCCTT
CCATTCCGCCTGATGACCCTAACTCCTCCCGCTCCTGGCGCTCACGCTGG
CGAATGGAATCGCGCTACGCGGATTTGGCCGTGGCGAAGAGTGACTACCC
TTTTTGCGCCTGGGATGCCACAACGGACGAAAGTATTTACACGCCCTTGC
TGCTGGATCCAAATGCTGTGTACCAGCCGCAAGTGCTTTCCTTTGCTGCC
CATCCGGATAGGGTGTACAAGGTCTCGGCGGCGTTCCCTAAGGTGATTTA
CTTTTCCTACCAGAGCTACACCTTGAGAGGGCTTCCTCTCACCTCCCTAT
CCGACCGGCATATCTGGCCAAGCAGCGGGAAGAACCCGTACAGGGAGGAA
GCGAGGGAGGACGAGATGGGCACGTACGACATTCACGTGACGCGCGAAGG
AAACAAGGGCTGGGCGAACGAGGTTCGGGGTTTGCGCGAAGACAGAACCA
ACGGCACTCGGACGCCCTACACTCGCGTAGTGGACTTCCTTGAGAATCTC
TCCATCCTCATGCTTCGATTCTACACACCCGAGCAGCCCCCCAGTGTCTG
GGGAGGGGTGGCCCCACCTGTGATTACATACAGCGATGACGATGGCAAAA
ACTGGACGGAACTCAAGCCCTGCACGGATGCAACCCGCTACTTATTTAAC
AAGGCCATGAAACAGATAGGCTGGAGCGGCTACGAGCTCCATGATTTATT
CCTCCACTCTCAATGGTACCGCCTGCGTTCGTGTGATTTATTGGGCGTGC
CGGAAGCCGACACCCCGACGCTCCTCCCCAGCATCAATCTCGACGGGCCC
GGCAGTGCGTCTTACGTCCCGTACGCCAACTACGATTCTTCATATCTGCA
TTGGTGCACGGATGGACGCCAACTGGGCAAAGATTTTGTTATGGTCATCG
AAGGAACAGCGCCTTTGACGGCCACTGGTCTTTTTGAGGGGACAAGGCAA
GTGTGGAATGTGTCAAGTTACAGCGTCAGGTAG

Synonyms

Publications