NO21G02420, NO21G02420 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G02420 vs. NCBI_GenBank
Match: EWM29475.1 (hypothetical protein Naga_100128g9 [Nannochloropsis gaditana]) HSP 1 Score: 379.4 bits (973), Expect = 1.500e-101 Identity = 173/251 (68.92%), Postives = 207/251 (82.47%), Query Frame = 0
Query: 152 MESRYADLAVAKSDYPFCAWDATTDESIYTPLLLDPNAVYQPQVLSFAAHPDRVYKVSAAFPKVIYFSYQSYTLRGLPLTSLSDRHIWPSSGKNPYREEAREDEMGTYDIHVTREGNKGWANEVRGLREDRTNGTRTPYTRVVDFLENLSILMLRFYTPEQPPSVWGGVAPPVITYSDDDGKNWTELKPCTDATRYLFNKAMKQIGWSGYELHDLFLHSQWYRLRSCDLLGVPEADTPTLLPSINLDGPGS 403
MESRYADLA+A S+YPFCAWDATTDESIYTPLLLDPNAVYQPQ+LSFAAHP RVYK+SA+FP+V+YFSY++Y+LRG PLTSL D I PS GKNPYREE E+ GTY+I+VTR+GNKGW NEVRGL ED TN T+ ++RV+DF++NLS++MLR YT EQPPSVWGGV PVI+Y+DD G+ W EL+PC+D TRY FN+AM+QIGW+ Y+ L HSQWYRLRSC LL EAD P L P +N+ G+
Sbjct: 1 MESRYADLAIASSEYPFCAWDATTDESIYTPLLLDPNAVYQPQLLSFAAHPHRVYKISASFPRVVYFSYETYSLRGHPLTSLPDLRIDPSWGKNPYREETTEEGAGTYEIYVTRDGNKGWPNEVRGLSEDHTNATQAAFSRVMDFVDNLSVVMLRLYTTEQPPSVWGGVDRPVISYTDDLGQTWKELQPCSDTTRYQFNRAMRQIGWTVYDFRYLIYHSQWYRLRSCHLLSKREADHPALFPDVNVQLGGN 251
BLAST of NO21G02420 vs. NCBI_GenBank
Match: EWM21339.1 (hypothetical protein Naga_100075g21 [Nannochloropsis gaditana]) HSP 1 Score: 82.4 bits (202), Expect = 3.800e-12 Identity = 48/142 (33.80%), Postives = 76/142 (53.52%), Query Frame = 0
Query: 203 DRVYKVSAAFPKVIYFSYQSYTLRGLPLTSLSDRHIWPSSGKNPYRE-EAREDEMGTYDIHVTREGNKGWANEVRGLREDRTNGTRTPYTRVVDFLENLSILMLRFYTPEQPPSVWGGVAPPVITYSDDDGKNWTELKPCTD 344
+ VY++ FP V YFS+ Y +++L D I PSSGKNP+ + E ED MGTY+I+V+++G+KG+ NE+ LR D T +PY + L+ L + + WG V P++ + W ++ C+D
Sbjct: 156 EEVYRIRGKFPYVRYFSFTVYDASLQSISTLHDTDIRPSSGKNPFNDIEVTEDNMGTYEIYVSKDGSKGYPNEMAALRPDST----SPYALLAFRLQLLDPRAGEDRSGKN--REWGYVDMPLVEILNHRNGEWDIIRRCSD 291
BLAST of NO21G02420 vs. NCBI_GenBank
Match: EWM25941.1 (hypothetical protein Naga_100469g5 [Nannochloropsis gaditana]) HSP 1 Score: 75.9 bits (185), Expect = 3.500e-10 Identity = 63/227 (27.75%), Postives = 100/227 (44.05%), Query Frame = 0
Query: 133 PSIPPDDPNSSRSWRSRWRMESRYADLAVAKSDYPFCAWDATTDESIYTPLLLDPNAVYQPQVLSFAAHPDRVYKVSAAFPKVIYFSYQSYTLR--GLPLTSLSDRHIWPSSGKNPY-REEAREDEMGTYDIHVTREGNKGWANEVRGLREDRTNGTRTPYTRVVDFLENLSI--LMLRFYTPEQ---PPSVWGGVAPPVITYSDDDG---KNWTELKPCTDATRYL 349
P++ DD ++ W +R +P C W A + L+DPNAVY Q++ + + YK+ FPK IYFS+Q Y + P ++D H+ P G NP+ +A ++MG Y++++T G +G+ NE+R L N +I L+LR Y P+ P + PP + + D G + W L C+ A L
Sbjct: 97 PTVDQDDKRAAIEWDVDTNEVAR-------GYSWPHCYWHAKYAINYTHFGLIDPNAVYWGQLVR-GSGANVAYKMKGRFPKSIYFSWQVYASQTSAAPDQKITDFHVKPLWGTNPFSNPDATPEDMGGYEVYLTPSGEEGYVNELR--------------------LPNATINQLILRMYKPDPILGPSISIIDLEPPTLYMAHDMGEGKREWRALPRCSAAKEKL 295
BLAST of NO21G02420 vs. NCBI_GenBank
Match: EWM22223.1 (hypothetical protein Naga_100312g6 [Nannochloropsis gaditana]) HSP 1 Score: 72.0 bits (175), Expect = 5.100e-9 Identity = 57/185 (30.81%), Postives = 82/185 (44.32%), Query Frame = 0
Query: 169 CAWDATTDESIYTPLLLDPNAVYQPQVLSFAAHPDRVYKVSAAFPKVIYFSYQSYTLRGL-PLTSLSDRHIWPSSGKNPYREEARE-DEMGTYDIHVTREGNKGWANEVRGLREDRTNGTRTPYTRVVDFLENLSILMLRFYT-PEQPP---SVWGGVAPPVITY-----SDDDGKNWTELKPCT 343
CAW A+ + + D AVY + P V ++ +P V YFSYQSY + L P+ S+ D I G NP+ + G Y +HVT G++G+ NE+ + +N T + ++LR Y +Q P +WG VAPPV+ Y S G W L CT
Sbjct: 44 CAWQASVGLN-FNIAFPDGYAVYHVLFVPKLQGPMDVIRIEGDYPFVRYFSYQSYDPKSLDPVASVRDYEIKSVRGVNPFATPGTTLGDKGKYQVHVTLNGDQGYPNELPTIASG-SNATG-------------AFVLLRVYAYDKQSPDKTDIWGAVAPPVVKYKLFNPSSGQGGLWYTLDQCT 213
BLAST of NO21G02420 vs. NCBI_GenBank
Match: XP_005854425.1 (hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526] >EKU21938.1 hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 65.5 bits (158), Expect = 4.800e-7 Identity = 68/262 (25.95%), Postives = 110/262 (41.98%), Query Frame = 0
Query: 72 LDLTHESKAAYLSFPPKLSPWEDDPVVLVTGPSDDNSREEDRNTIAIDQDLQFNKHDDDSSPSIPPDDPNSSRSWRSRWRMESRYADLAVAKSDYPFCAWDATTDESIYTPLLLDPNAVYQPQVLSFAAHPDRVYKVSAAFPKVIYFSYQSYTLRGL-PLTSLSDRHIWPSSGKNPYREEARE-DEMGTYDIHVTREGNKGWANEVRGLREDRTNGTRTPYTRVVDFLENLSILMLRFYT-PEQPP---SVWGGVAPPVITY 328
L + S +L+ PP S W+ T PSD + A Q N + ++ + + + + ++ + + YA + S CAW A+ + + D AVY + P V ++ +P V YFSYQSY + L P+ S+ D I G NP+ + G Y +HVT G++G+ NE+ + +N T + ++LR Y +Q P +WG VAPPV+ Y
Sbjct: 98 LPCSQTSTGPFLALPPPPSAWKXXXXNSDTTPSDPKAAAAYLAKQAAMGAAQVN-----TMANVAVNQLDMTDAQKAVFLSYTSYALAGLNASIEFNCAWQASVGLN-FNIAFPDGYAVYHVLFVPKLQGPMDVIRIEGDYPFVRYFSYQSYDPKSLDPVASVRDYEIKSVRGVNPFATPGTTLGDKGKYQVHVTLNGDQGYPNELPTIASG-SNATG-------------AFVLLRVYAYDKQSPDKTDIWGAVAPPVVKY 339
BLAST of NO21G02420 vs. NCBI_GenBank
Match: WP_072845160.1 (hypothetical protein [Rhodococcus tukisamuensis] >SDD75023.1 hypothetical protein SAMN05444580_106141 [Rhodococcus tukisamuensis]) HSP 1 Score: 65.5 bits (158), Expect = 4.800e-7 Identity = 68/254 (26.77%), Postives = 95/254 (37.40%), Query Frame = 0
Query: 167 PFCAWDATTDESIYTPLLLDPNAVYQPQVLSFAAHPDRVYKVSAAFPKVIYFSYQSYTLRGLPLTSLSDRHIWPSSGK-NPYRE---EAREDEMGTYDIHVTREGNKGWANEVRGLREDRTNGTRTPYTRVVDFLENLSILMLRFYTPEQPPSVWGGVAPPVITYSDDDGKNWTELKPCTDATRYLFNKAMKQIGWSGYELHDLFLHSQWYRLRSCDLLGVPEADTPTLLPSINLDGPGSASYVPYANYDSSYL 417
P CAW +D + D NA Y VL +A PD ++S FP Y S +Y + +L D I P G NP+ + A + + V N++RGL G P L L++R Y P+ P S GGV P +T +G T + C A F+ A Q G G L F + + G P +P P S S + + N D+ YL
Sbjct: 42 PGCAWQFMSDSQVLNVAFPDVNATY--WVLPYALTPDERIELSGTFPDARYMSLNTYGTDFGTVDTLRDNQIAPDPGSGNPFADPAAAAAPESARRWHATVVPGAADHSVNQIRGL---PAAGQSAP----------LGFLIIRVYVPDDPNSAPGGVPLPDVTLVRGNGAVRTPVPTCAAA----FDPAAVQNGPVGQALTAAFDNV---------IAGAASGAFPGGVPEATFVNPASTSGL-FPNGDNKYL 266
BLAST of NO21G02420 vs. NCBI_GenBank
Match: WP_092776135.1 (hypothetical protein [Rhodococcus tukisamuensis]) HSP 1 Score: 65.5 bits (158), Expect = 4.800e-7 Identity = 68/254 (26.77%), Postives = 95/254 (37.40%), Query Frame = 0
Query: 167 PFCAWDATTDESIYTPLLLDPNAVYQPQVLSFAAHPDRVYKVSAAFPKVIYFSYQSYTLRGLPLTSLSDRHIWPSSGK-NPYRE---EAREDEMGTYDIHVTREGNKGWANEVRGLREDRTNGTRTPYTRVVDFLENLSILMLRFYTPEQPPSVWGGVAPPVITYSDDDGKNWTELKPCTDATRYLFNKAMKQIGWSGYELHDLFLHSQWYRLRSCDLLGVPEADTPTLLPSINLDGPGSASYVPYANYDSSYL 417
P CAW +D + D NA Y VL +A PD ++S FP Y S +Y + +L D I P G NP+ + A + + V N++RGL G P L L++R Y P+ P S GGV P +T +G T + C A F+ A Q G G L F + + G P +P P S S + + N D+ YL
Sbjct: 23 PGCAWQFMSDSQVLNVAFPDVNATY--WVLPYALTPDERIELSGTFPDARYMSLNTYGTDFGTVDTLRDNQIAPDPGSGNPFADPAAAAAPESARRWHATVVPGAADHSVNQIRGL---PAAGQSAP----------LGFLIIRVYVPDDPNSAPGGVPLPDVTLVRGNGAVRTPVPTCAAA----FDPAAVQNGPVGQALTAAFDNV---------IAGAASGAFPGGVPEATFVNPASTSGL-FPNGDNKYL 247 The following BLAST results are available for this feature:
BLAST of NO21G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 7
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
The following polypeptide feature(s) derives from this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G02420 ID=NO21G02420|Name=NO21G02420|organism=Nannochloropsis oceanica|type=gene|length=3860bpback to top protein sequence of NO21G02420.4 >NO21G02420.4-protein ID=NO21G02420.4-protein|Name=NO21G02420.4|organism=Nannochloropsis oceanica|type=polypeptide|length=437bpback to top protein sequence of NO21G02420.3 >NO21G02420.3-protein ID=NO21G02420.3-protein|Name=NO21G02420.3|organism=Nannochloropsis oceanica|type=polypeptide|length=461bpback to top protein sequence of NO21G02420.2 >NO21G02420.2-protein ID=NO21G02420.2-protein|Name=NO21G02420.2|organism=Nannochloropsis oceanica|type=polypeptide|length=589bpback to top protein sequence of NO21G02420.1 >NO21G02420.1-protein ID=NO21G02420.1-protein|Name=NO21G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=620bpback to top Synonyms
Publications
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