NO21G02410.2, NO21G02410.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02410.2
Unique NameNO21G02410.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2010
Alignment locationchr21:727458..730891 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:727458..730891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G02410.2 vs.
Match: EWM29478.1 (hypothetical protein Naga_100128g8 [Nannochloropsis gaditana])

HSP 1 Score: 296.6 bits (758), Expect = 9.900e-77
Identity = 163/320 (50.94%), Postives = 206/320 (64.38%), Query Frame = 0 
Query:    7 ILFLFLAIASTASAQRQHLQQGSSLGSMPTFQIQSHAVTPATG---PTPMQFIPVASP----AVPTPKAAGGNTSPESLYKQQRVEYTFPVPVTLAPVQRDGNGWTKAFAAIPCLQCYVTDAGCYYEYTQQAKTQIAFLSGEQFKRLLTSCVSTPGKVTQSCWQAAGLENVKLEDYQYEVYAYHDKGAEAVFEGTYLVFNNGNDRADINYGMAYFGLKSGAPSEPGGLVVAKGEGKIPTRLKEVVQGLKHPITIPKATNTIAAAIPPTQQQQQ----QQRRPKALRIPPPVELRNKAEEGKEGEWTRHALGLGNEVAADG 316
            ++F  + + ++ +AQR               Q    A+TP  G    T + F   AS      + T     GN  PE LYKQQRVEYTF +PV+LAPV+   +GW K FAA PCLQCYVTDAG Y EY ++A TQ+AFLSG+QFK LL  C S PGKVTQ+CW AAGL +V++E Y Y+ YAYHDKG   VFEGTYLVFNNG++  +I YGMAYFGL  GAPSEPGGLVV +GEG  PTRLKE+VQGL+ PI IPKAT+++     P Q++++    ++R     R    + +     E  EG WTR+AL +GNEVA +G
Sbjct:    9 VVFFLITLNTSTTAQR--------------LQHSLRAITPVQGYSSNTAVHFNRTASGNSYNTLATTLVVDGNIFPELLYKQQRVEYTFAIPVSLAPVELLTDGWVKDFAAFPCLQCYVTDAGFYAEYAEEANTQLAFLSGDQFKALLVHCASAPGKVTQACWDAAGLGDVEIEAYPYQTYAYHDKGTTPVFEGTYLVFNNGDNPVNIEYGMAYFGLNPGAPSEPGGLVVKEGEGLTPTRLKEIVQGLQRPILIPKATDSLDI---PGQRKKEIRPVEERASSVERTSKSLRVAGSKAERVEGTWTRYALAMGNEVANNG 311
The following BLAST results are available for this feature:
BLAST of NO21G02410.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29478.19.900e-7750.94hypothetical protein Naga_100128g8 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02410NO21G02410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02410.2NO21G02410.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02410.2.cds1NO21G02410.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02410.2.cds2NO21G02410.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02410.2.cds3NO21G02410.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02410.2.cds4NO21G02410.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02410.2.cds5NO21G02410.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02410.2.cds6NO21G02410.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02410.2 ID=NO21G02410.2|Name=NO21G02410.2|organism=Nannochloropsis oceanica|type=mRNA|length=2010bp
ATCTCGCGTTTGTGAATTCAAAAACGGCAGATATCGATACGCATACAAGA
TCATTGCTTGGGGTGTTATCATATTCAGTATAGCCAAGCTTCTTTATATC
AGATGTGTTATAATCTCGTATGCCCTTGGTCCAATTGCCTGCATTCATTC
AGCAGACACGGGGCAACAAGCTCGGCCTCCGAATCATCATCGGCCGATTA
TTTTCTTGTGCTCGGATGACCCGCCCAAGCATTATTTTCAGCACACAAAC
ACGCGCGTATACTGTATTCAAGTGCACAGGAAAGCCACATCATGACTGGC
TGTCGCTGTATCTTGTTCCTTTTTCTGGCCATCGCTAGCACGGCTTCAGC
GCAGCGACAGCACCTGCAGCAAGGCTCCTCCCTCGGATCCATGCCCACAT
TCCAAATTCAAAGCCACGCCGTCACACCCGCCACTGGTCCGACCCCAATG
CAATTTATACCGGTTGCATCACCCGCAGTGCCGACGCCTAAGGCAGCAGG
AGGGAACACATCTCCTGAATCGCTCTACAAGCAGCAACGCGTGGAGTATA
CTTTCCCGGTGCCAGTCACACTAGCTCCAGTCCAACGGGATGGGAATGGC
TGGACCAAGGCCTTCGCCGCCATTCCTTGCTTGCAATGTTACGTGACAGA
CGCCGGCTGTTATTATGAGTACACACAACAAGCCAAGACTCAGATCGCAT
TCCTATCCGGAGAGCAGTTCAAGAGGCTCCTCACCTCATGCGTATCTACT
CCGGGCAAAGTCACTCAAAGCTGCTGGCAGGCCGCGGGGCTCGAGAATGT
GAAGCTGGAGGATTATCAGTACGAGGTTTACGCCTACCACGATAAGGGTG
CGGAGGCCGTTTTTGAGGGAACATACCTTGTCTTTAACAATGGCAACGAC
CGAGCTGACATTAACTATGGCATGGCCTACTTTGGCCTCAAATCCGGGGC
GCCGTCTGAGCCAGGGGGACTGGTCGTTGCGAAAGGAGAAGGCAAGATTC
CCACCCGGCTAAAGGAGGTCGTCCAAGGGCTTAAGCATCCCATCACCATC
CCCAAAGCCACAAATACCATCGCTGCCGCCATTCCTCCCACTCAGCAGCA
GCAACAACAGCAGCGGCGACCAAAAGCCCTGCGTATTCCCCCTCCCGTGG
AATTAAGGAACAAGGCGGAGGAAGGGAAGGAAGGAGAATGGACGCGTCAC
GCCCTTGGCCTGGGTAACGAGGTAGCGGCCGACGGTAGGTCTCTCTTTGT
CCTCCCTTTCTCCTTCCCCTCCTCCCTCCAACTCCTCCGGGTCGATTACA
AATGTTGAGCCAGACCTGAAACCTTAAATATACTCGGACTCTGACTCTCC
CTTCCTACCTCCCTCTCTCCCTCCTTTCTCCTTCCCTCAGGCTACAATTG
GTGGTCAAACGCAGGTGCGGAGTACGACGGAGGGTCTCTGGTTGCCTCCT
TTTTGTCAGGAGAATTTTACACCAAACTCAGGCTCCTGTGCCCCGAAACG
ACGGCGGAAGGGCTTTGGATTTTGACGTCGGAGTGCTGGAAGGAGATCGC
CAACGAGTCAACGAAGCCTCAAGTTCTAGAAAGTGGCGGGCGGATCGAAC
GTGCGTACGTGGATGGGGCGGGAGGGAACGAAGGAGGATCATGTGTGGAT
GGATGGTGGATATTGATGAATGTATCCCAGGAAGCAGACGCGAAGGTGAC
GCAGGCTGATGCAAATTTTGGGTTACGAACGCTGGATAAGAATCCGAGGG
ATGAGCATTAGACCTCTCCTTTTCTTACAGCTGTTTCTAGTGCACGGAGG
GAGGGGAAAGGTTGCACAAAGGAGGGGAAATGAAGGGAGGTAAAGATTAA
GGTTAATGGACGTGGTATTGGACAACCGCCAATTCAATTACCTGTAGGGC
AAACAAAGAAAACGAGCGAGAGAACGCTGAGTACTGAGAAGTAAAAAATC
AATCAAAGAGACAAGGGAAGACACAAAGAAAACAAAAGAGACAATGACCC
CGCATAAAGC
back to top

protein sequence of NO21G02410.2

>NO21G02410.2-protein ID=NO21G02410.2-protein|Name=NO21G02410.2|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MTGCRCILFLFLAIASTASAQRQHLQQGSSLGSMPTFQIQSHAVTPATGP
TPMQFIPVASPAVPTPKAAGGNTSPESLYKQQRVEYTFPVPVTLAPVQRD
GNGWTKAFAAIPCLQCYVTDAGCYYEYTQQAKTQIAFLSGEQFKRLLTSC
VSTPGKVTQSCWQAAGLENVKLEDYQYEVYAYHDKGAEAVFEGTYLVFNN
GNDRADINYGMAYFGLKSGAPSEPGGLVVAKGEGKIPTRLKEVVQGLKHP
ITIPKATNTIAAAIPPTQQQQQQQRRPKALRIPPPVELRNKAEEGKEGEW
TRHALGLGNEVAADGRSLFVLPFSFPSSLQLLRVDYKC*
back to top

mRNA from alignment at chr21:727458..730891+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02410.2 ID=NO21G02410.2|Name=NO21G02410.2|organism=Nannochloropsis oceanica|type=mRNA|length=3434bp|location=Sequence derived from alignment at chr21:727458..730891+ (Nannochloropsis oceanica)
ATCTCGCGTTTGTGAATTCAAAAACGGCAGATATCGATACGCATACAAGA
TCATTGCTTGGGGTGTTATCATATTCAGTATAGCCAAGCTTCTTTATATC
AGATGTGTTATAATCTCGTATGCCCTTGGTCCAATTGCCTGCATTCATTC
AGCAGACACGGGGCAACAAGCTCGGCCTCCGAATCATCATCGGCCGATTA
TTTTCTTGTGCTCGGATGACCCGCCCAAGCATTATTTTCAGCACACAAAC
ACGCGCGTATACTGTATTCAAGTGCACAGGAAAGCCACATCATGACTGGC
TGTCGCTGTATCTTGTTCCTTTTTCTGGCCATCGCTAGCACGGCTTCAGC
GCAGCGACAGCACCTGCAGCAAGGCTCCTCCCTCGGATCCATGCCCACAT
TCCAAATTCAAAGCCACGCCGTCACACCCGCCACTGGTCCGACCCCAATG
CAATTTATACCGGTTGCATCACCCGCAGTGCCGACGCCTAAGGCAGCAGG
AGGGAACACATCTCCTGAATCGCTCTACAAGCAGCAACGCGTGGAGTATA
CTTTCCCGGTGCCAGTCACACTAGCTCCAGTCCAACGGGATGGGAATGGT
GAGCACTATATGTTGTTGGATGATAGGGAACAAATTTGTGGTGGAGCGTA
TTTAATAATGGCATCATTCTGGGTCACAATTTGGGGTCTTAATTACGACT
GCCCCCTCTTCTCGTCTTGCCTCTCCTGCCTTCCCTCCCTCCCTCCCTCC
CTCTTCCTCTTTTCAGGCTGGACCAAGGCCTTCGCCGCCATTCCTTGCTT
GCAATGTTACGTGACAGACGCCGGCTGTTATTATGAGTACACACAACAAG
CCAAGACTCAGATCGCATTCCTATCCGGAGAGCAGTTCAAGGCATGTCTC
TCTTTCCCTCCATCCCTGTTCCCTTTCATTTCTTCCTCCCCTTGAAGTAC
CTCCCAGCCACTTCTTCTCCTTTCCGTCATTCCCTCCTTTCTCTAATCAC
TTCTTGCTTTCTTACCCTTTCGACCTTCACCACATTCCTGTCAACGTTCC
CGCATCAGGGAGTAATTCACAAAGATGGCAGACACAGACCGACCTATGAA
GGCGTCCATGAAGCTGGTAGATTCAGTTATCGGGATATTTAAATTTATCG
AGCTGATGATCCTTCTTGACATTTAGTCTCACTTTCCTTCCCTCCTTTCC
TTCCCAAAGACCCTCCTCCCCTCCTTTATCATCACCCTCGAGCAAGCCCC
TAATCCCCCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCTCCCCCTCTCCC
TCCGCCCGTTAGAGGCTCCTCACCTCATGCGTATCTACTCCGGGCAAAGT
CACTCAAAGCTGCTGGCAGGCCGCGGGGCTCGAGAATGTGAAGCTGGAGG
ATTATCAGTACGAGGTTTACGCCTACCACGATAAGGTCAAGAAAGGAGGG
AGGGAGGGAGGAAGGGAGGAAGGGAGGGAGGGAGGAAGAAAATATCAAAT
TACTGATTGCATTTTTTGCATCGCCATTTTCTTGGTGACAGGGTGCGGAG
GCCGTTTTTGAGGGAACATACCTTGTCTTTAACAATGGCAACGACCGAGG
TACGTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCTAAT
CTTCTCACCCTTTCCCCTTCCCTTCCTGCCTACCTGCCTCCCTTCATCGC
AGCTGACATTAACTATGGCATGGCCTACTTTGGCCTCAAATCCGGGGCGC
CGTCTGAGCCAGGGGGACTGGTCGTTGCGAAAGGAGAAGGTAAGAAGGGA
CGGAGGGAGGGACGGAGGGCGGGAGGGAGGGAGTGAGGGTAAATGGATAG
CCGGCAGGATCGATGAGAGCGGAAGAAGCATAGAAGGAGGGAGGGGCTGA
AGAAGAGTAGTCGCGAGCACGTCTCTAAAGACAAGACTCCATACCCTCCC
CTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTATCCCAGG
CAAGATTCCCACCCGGCTAAAGGAGGTCGTCCAAGGGCTTAAGCATCCCA
TCACCATCCCCAAAGCCACAAATACCATCGCTGCCGCCATTCCTCCCACT
CAGCAGCAGCAACAACAGCAGCGGCGACCAAAAGCCCTGCGTATTCCCCC
TCCCGTGGAATTAAGGAACAAGGCGGAGGAAGGGAAGGAAGGAGAATGGA
CGCGTCACGCCCTTGGCCTGGGTAACGAGGTAGCGGCCGACGGTAGGTCT
CTCTTTGTCCTCCCTTTCTCCTTCCCCTCCTCCCTCCAACTCCTCCGGGT
CGATTACAAATGTTGAGCCAGACCTGAAACCTTAAATATACTCGGACTCT
GACTCTCCCTTCCTACCTCCCTCTCTCCCTCCTTTCTCCTTCCCTCAGGC
TACAATTGGTGGTCAAACGCAGGTGCGGAGTACGACGGAGGGTCTCTGGT
TGCCTCCTTTTTGTCAGGAGAATTTTACACCAAACTCAGGCTCCTGTGCC
CCGAAACGACGGCGGAAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAAAGA
GGGAAAGAGGGAAAGAGGGAAAGAGAAAGCAGCAATAGGGACCCTCGCTT
TTTTCGGGCGATTTTAACTCCGAGATGAGGGAAGAAGGGAGGGAGGGAGG
AAAGAGAATTGCCTAACCACGCTTTTTATTCCTTTCTTGTTCTGTAGGGC
TTTGGATTTTGACGTCGGAGTGCTGGAAGGAGGTAGGGATTACCAAAGCC
AGACATTGAGAAAGAGAGAGACGGAAGGAGGGAGGGAGGGAAGGCAGGAG
GGGACAAAAGCAAGCTAGATATAGACGTGACACAAGTCCTCCCTTCCTCC
CCTCCCTCCTTCCCTCCTTCCTACCTTCCTTCTCCTTTCTCAGTCATCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCTCTCCCTCTCTCC
CTTCCTCCCTTCCTCCAAGATCGCCAACGAGTCAACGAAGCCTCAAGTTC
TAGAAAGTGGCGGGCGGATCGAACGTGCGTACGTGGATGGGGCGGGAGGG
AACGAAGGAGGATCATGTGTGGATGGATGGTGGATATTGATGAATGTATC
CCAGGAAGCAGACGCGAAGGTGACGCAGGCTGATGCAAATTTTGGGTTAC
GAACGCTGGATAAGAATCCGAGGGATGAGCATTAGACCTCTCCTTTTCTT
ACAGCTGTTTCTAGTGCACGGAGGGAGGGGAAAGGTTGCACAAAGGAGGG
GAAATGAAGGGAGGTAAAGATTAAGGTTAATGGACGTGGTATTGGACAAC
CGCCAATTCAATTACCTGTAGGGCAAACAAAGAAAACGAGCGAGAGAACG
CTGAGTACTGAGAAGTAAAAAATCAATCAAAGAGACAAGGGAAGACACAA
AGAAAACAAAAGAGACAATGACCCCGCATAAAGC
back to top

Coding sequence (CDS) from alignment at chr21:727458..730891+

>NO21G02410.2 ID=NO21G02410.2|Name=NO21G02410.2|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr21:727458..730891+ (Nannochloropsis oceanica)
ATGACTGGCTGTCGCTGTATCTTGTTCCTTTTTCTGGCCATCGCTAGCAC
GGCTTCAGCGCAGCGACAGCACCTGCAGCAAGGCTCCTCCCTCGGATCCA
TGCCCACATTCCAAATTCAAAGCCACGCCGTCACACCCGCCACTGGTCCG
ACCCCAATGCAATTTATACCGGTTGCATCACCCGCAGTGCCGACGCCTAA
GGCAGCAGGAGGGAACACATCTCCTGAATCGCTCTACAAGCAGCAACGCG
TGGAGTATACTTTCCCGGTGCCAGTCACACTAGCTCCAGTCCAACGGGAT
GGGAATGGCTGGACCAAGGCCTTCGCCGCCATTCCTTGCTTGCAATGTTA
CGTGACAGACGCCGGCTGTTATTATGAGTACACACAACAAGCCAAGACTC
AGATCGCATTCCTATCCGGAGAGCAGTTCAAGAGGCTCCTCACCTCATGC
GTATCTACTCCGGGCAAAGTCACTCAAAGCTGCTGGCAGGCCGCGGGGCT
CGAGAATGTGAAGCTGGAGGATTATCAGTACGAGGTTTACGCCTACCACG
ATAAGGGTGCGGAGGCCGTTTTTGAGGGAACATACCTTGTCTTTAACAAT
GGCAACGACCGAGCTGACATTAACTATGGCATGGCCTACTTTGGCCTCAA
ATCCGGGGCGCCGTCTGAGCCAGGGGGACTGGTCGTTGCGAAAGGAGAAG
GCAAGATTCCCACCCGGCTAAAGGAGGTCGTCCAAGGGCTTAAGCATCCC
ATCACCATCCCCAAAGCCACAAATACCATCGCTGCCGCCATTCCTCCCAC
TCAGCAGCAGCAACAACAGCAGCGGCGACCAAAAGCCCTGCGTATTCCCC
CTCCCGTGGAATTAAGGAACAAGGCGGAGGAAGGGAAGGAAGGAGAATGG
ACGCGTCACGCCCTTGGCCTGGGTAACGAGGTAGCGGCCGACGGTAGGTC
TCTCTTTGTCCTCCCTTTCTCCTTCCCCTCCTCCCTCCAACTCCTCCGGG
TCGATTACAAATGTTGA
back to top
Synonyms
Publications