NO21G02380.1, NO21G02380.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO21G02380.1
Unique Name	NO21G02380.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1914
Alignment location	chr21:715238..717151 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr21	genome	chr21:715238..717151 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO21G02380.1 vs.
Match: XP_001323837.1 (ankyrin repeat protein [Trichomonas vaginalis G3]; EAY11614.1 ankyrin repeat protein, putative [Trichomonas vaginalis G3])

HSP 1 Score: 83.6 bits (205), Expect = 2.500e-12
Identity = 60/213 (28.17%), Postives = 95/213 (44.60%), Query Frame = 0

Query:  329 GDNALLLAARLNDAEMVRRLLEEGRWKSDVRNAYGETLLHLAVSGGRGHVSLLPFLGILVGEGRRVGGTEGGNVGGWNVRTVLGRTPWMEAAVCGNIEGLKALWREGGREGGLEVGAVDNDGRNALHLAVMYRQEEAVYWLVERDGGREGDGWRKGVLLQGRDKDGMTPLHFAAMYNSVKLAQMLLNEGGSEGGRARTKEGETPMQVAERFGH 542
            G  AL +AA     EMV  L+  G   ++  N YG+T LH+A      + +    L +L+  G  +           N +   G+TP   AA C   E  + L   G       +   D DG+ ALH+A  Y  +E +  L+             G  +  +DKDG   LH AA YN ++LA++LL+ G +     + K+G+T + +A  + +
Sbjct:  386 GKTALYIAAECQSKEMVEHLIAHGANINEKDN-YGKTALHIA-----SNYNYKEILKLLLSHGANI-----------NEKDDHGKTPLHVAAQCNKKESAEILLSHGAN-----INEKDKDGKTALHIAADYNYKEILKLLLSH-----------GANINEKDKDGSAALHIAARYNKIELAELLLSHGANI--NEKDKDGKTALHIAADYNY 563

The following BLAST results are available for this feature:

BLAST of NO21G02380.1 vs.

BLAST of NO21G02380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_001323837.1	2.500e-12	28.17	ankyrin repeat protein [Trichomonas vaginalis G3];...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G02380	NO21G02380	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO21G02380.1	NO21G02380.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO21G02380.1.cds1	NO21G02380.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr21:715238..717151-
coding sequence from alignment at chr21:715238..717151-

mRNA sequence

>NO21G02380.1 ID=NO21G02380.1|Name=NO21G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp
ATGGCTGTTCGAGTAACTCGCGGGACAAGCATCCTGAGCGAGCTTCGGGG
TCGATTTCGCTATCCTGGCTCCGCCTCTTTCAGACAAGAAGGAGACGAGC
AGCAGCAGCAGGAGCAGCAGCAATTGGAGGAAGAAGACGCAGAGGCAGGG
GAGCAGCACACGATGGCGGCCTTGGACAGTGATTCAGATGCTACAGTGAA
CACGGATCCTTTGAGTGAGCTTGAAGAATACTTCCCCGCGGGCGAGGAGG
ACGACGACATCGAGGACAAGGACGAGGAGGAGGAGGTGGAGGGACACGAT
GGTGGCACCACCCGCAAGCAGGGCTTATATCCTTCAATCCTGATCGAAGA
CCAGCAAGAAAAAGGAGAGACGACAACGTTATCTCCCTCCTCAATCTTGT
CCCTGGTGGAGAAACGACTCCACCACAACCAAGCGTCTGCTGCCCTCCCT
CGTGGTGCTCCTACCGGCGCAGGAACCTCTCCCTCCATCCCGCAAACCTC
CGACGCCTCCCAGCCGTCGAGCTCTCCCTCCATCCCTCCTTCTTTCTCCT
CCTCCCCTTCTCCGTCAAAGAAAGCAAGCCCCTTCTTCCAACTCATAGAA
CGAAGGCAATCTTCTTCCTCCACTGTTTTAGGGCTTAATTCTCCCTTCCC
TTCCTCCCTTCGTACACCCGCCTCAGCCGCGACCGATGCTGGAGAAAAGA
GGGAAGGCAAGAGGGAAAAAATGCAGGGAGGGGAAGAGACGCCCAAGACG
ACGTCAATGTTTGCATTTTACCCCCTCAAGACTAGGACGGAGGGGGGGAA
CGAAGGGAGGAAGGAGGGAGGGAGGGAGGAGGGAATGGAGAGAGAGAAGG
AGGTCACGAAGCGCTTCATTCGTTCCCTTGACATCTATGGTTTGTGCGCG
GAAGGCAGGAAGGGGAACGGAGAAATGGGTGAGGAGGGATTTGACATGAG
CGAGGAAAAGCAAATGTGTTTGTTGGGAAGTCGGGGGGACAATGCGCTGT
TGCTGGCTGCCCGTTTGAATGATGCAGAGATGGTGAGGAGACTCCTTGAA
GAGGGGAGATGGAAGAGTGATGTGAGAAATGCGTATGGTGAGACACTGCT
CCACCTGGCGGTGAGTGGTGGGAGAGGCCATGTCTCTCTCTTGCCTTTCC
TGGGAATATTAGTCGGAGAGGGAAGGAGGGTGGGAGGGACGGAGGGAGGG
AATGTGGGTGGGTGGAATGTTCGGACTGTCCTCGGAAGGACGCCGTGGAT
GGAGGCGGCGGTGTGTGGTAATATAGAGGGTTTGAAGGCATTGTGGAGGG
AGGGAGGGAGGGAGGGCGGGCTGGAGGTCGGGGCCGTTGATAATGATGGG
AGGAACGCCTTACATCTCGCTGTCATGTATCGGCAGGAAGAGGCAGTTTA
TTGGTTGGTCGAGAGGGATGGAGGAAGAGAGGGCGATGGATGGAGGAAGG
GAGTGTTGTTACAGGGGAGGGATAAGGATGGGATGACACCGCTTCATTTT
GCGGCCATGTACAACAGTGTGAAATTGGCGCAGATGCTTTTGAACGAGGG
AGGAAGTGAGGGAGGGAGGGCGAGGACGAAGGAAGGGGAAACCCCAATGC
AGGTGGCGGAGAGATTTGGGCATGTGTGGACGAGGAGGGCTCTGGAAATA
ATGATGGAGGAGGCAAAGGACGAGGAAAGGGGGGTGGAAGGGGAGGAGGA
AGAGGGGGCGATGGAGAGTCAGACAAACAGCAAGGCTAGATTGCACAAGT
GGAACGGAGGGAAGGGGGAAGGGAGGGAGGAAGTAAGCGGGGGAATGCAG
GTGAGGATAATGGTGGGGGGGAGGGAAGTGATTTTGGAGGGGATGCAAAT
TGAATGTGTCGAGATAGTGGGGGGATGGGAGAGAGGGAGAGAGGGAGGGG
GGTTGGCGATGTAA

protein sequence of NO21G02380.1

>NO21G02380.1-protein ID=NO21G02380.1-protein|Name=NO21G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MAVRVTRGTSILSELRGRFRYPGSASFRQEGDEQQQQEQQQLEEEDAEAG
EQHTMAALDSDSDATVNTDPLSELEEYFPAGEEDDDIEDKDEEEEVEGHD
GGTTRKQGLYPSILIEDQQEKGETTTLSPSSILSLVEKRLHHNQASAALP
RGAPTGAGTSPSIPQTSDASQPSSSPSIPPSFSSSPSPSKKASPFFQLIE
RRQSSSSTVLGLNSPFPSSLRTPASAATDAGEKREGKREKMQGGEETPKT
TSMFAFYPLKTRTEGGNEGRKEGGREEGMEREKEVTKRFIRSLDIYGLCA
EGRKGNGEMGEEGFDMSEEKQMCLLGSRGDNALLLAARLNDAEMVRRLLE
EGRWKSDVRNAYGETLLHLAVSGGRGHVSLLPFLGILVGEGRRVGGTEGG
NVGGWNVRTVLGRTPWMEAAVCGNIEGLKALWREGGREGGLEVGAVDNDG
RNALHLAVMYRQEEAVYWLVERDGGREGDGWRKGVLLQGRDKDGMTPLHF
AAMYNSVKLAQMLLNEGGSEGGRARTKEGETPMQVAERFGHVWTRRALEI
MMEEAKDEERGVEGEEEEGAMESQTNSKARLHKWNGGKGEGREEVSGGMQ
VRIMVGGREVILEGMQIECVEIVGGWERGREGGGLAM*

mRNA from alignment at chr21:715238..717151-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO21G02380.1 ID=NO21G02380.1|Name=NO21G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp|location=Sequence derived from alignment at chr21:715238..717151- (Nannochloropsis oceanica)
ATGGCTGTTCGAGTAACTCGCGGGACAAGCATCCTGAGCGAGCTTCGGGG
TCGATTTCGCTATCCTGGCTCCGCCTCTTTCAGACAAGAAGGAGACGAGC
AGCAGCAGCAGGAGCAGCAGCAATTGGAGGAAGAAGACGCAGAGGCAGGG
GAGCAGCACACGATGGCGGCCTTGGACAGTGATTCAGATGCTACAGTGAA
CACGGATCCTTTGAGTGAGCTTGAAGAATACTTCCCCGCGGGCGAGGAGG
ACGACGACATCGAGGACAAGGACGAGGAGGAGGAGGTGGAGGGACACGAT
GGTGGCACCACCCGCAAGCAGGGCTTATATCCTTCAATCCTGATCGAAGA
CCAGCAAGAAAAAGGAGAGACGACAACGTTATCTCCCTCCTCAATCTTGT
CCCTGGTGGAGAAACGACTCCACCACAACCAAGCGTCTGCTGCCCTCCCT
CGTGGTGCTCCTACCGGCGCAGGAACCTCTCCCTCCATCCCGCAAACCTC
CGACGCCTCCCAGCCGTCGAGCTCTCCCTCCATCCCTCCTTCTTTCTCCT
CCTCCCCTTCTCCGTCAAAGAAAGCAAGCCCCTTCTTCCAACTCATAGAA
CGAAGGCAATCTTCTTCCTCCACTGTTTTAGGGCTTAATTCTCCCTTCCC
TTCCTCCCTTCGTACACCCGCCTCAGCCGCGACCGATGCTGGAGAAAAGA
GGGAAGGCAAGAGGGAAAAAATGCAGGGAGGGGAAGAGACGCCCAAGACG
ACGTCAATGTTTGCATTTTACCCCCTCAAGACTAGGACGGAGGGGGGGAA
CGAAGGGAGGAAGGAGGGAGGGAGGGAGGAGGGAATGGAGAGAGAGAAGG
AGGTCACGAAGCGCTTCATTCGTTCCCTTGACATCTATGGTTTGTGCGCG
GAAGGCAGGAAGGGGAACGGAGAAATGGGTGAGGAGGGATTTGACATGAG
CGAGGAAAAGCAAATGTGTTTGTTGGGAAGTCGGGGGGACAATGCGCTGT
TGCTGGCTGCCCGTTTGAATGATGCAGAGATGGTGAGGAGACTCCTTGAA
GAGGGGAGATGGAAGAGTGATGTGAGAAATGCGTATGGTGAGACACTGCT
CCACCTGGCGGTGAGTGGTGGGAGAGGCCATGTCTCTCTCTTGCCTTTCC
TGGGAATATTAGTCGGAGAGGGAAGGAGGGTGGGAGGGACGGAGGGAGGG
AATGTGGGTGGGTGGAATGTTCGGACTGTCCTCGGAAGGACGCCGTGGAT
GGAGGCGGCGGTGTGTGGTAATATAGAGGGTTTGAAGGCATTGTGGAGGG
AGGGAGGGAGGGAGGGCGGGCTGGAGGTCGGGGCCGTTGATAATGATGGG
AGGAACGCCTTACATCTCGCTGTCATGTATCGGCAGGAAGAGGCAGTTTA
TTGGTTGGTCGAGAGGGATGGAGGAAGAGAGGGCGATGGATGGAGGAAGG
GAGTGTTGTTACAGGGGAGGGATAAGGATGGGATGACACCGCTTCATTTT
GCGGCCATGTACAACAGTGTGAAATTGGCGCAGATGCTTTTGAACGAGGG
AGGAAGTGAGGGAGGGAGGGCGAGGACGAAGGAAGGGGAAACCCCAATGC
AGGTGGCGGAGAGATTTGGGCATGTGTGGACGAGGAGGGCTCTGGAAATA
ATGATGGAGGAGGCAAAGGACGAGGAAAGGGGGGTGGAAGGGGAGGAGGA
AGAGGGGGCGATGGAGAGTCAGACAAACAGCAAGGCTAGATTGCACAAGT
GGAACGGAGGGAAGGGGGAAGGGAGGGAGGAAGTAAGCGGGGGAATGCAG
GTGAGGATAATGGTGGGGGGGAGGGAAGTGATTTTGGAGGGGATGCAAAT
TGAATGTGTCGAGATAGTGGGGGGATGGGAGAGAGGGAGAGAGGGAGGGG
GGTTGGCGATGTAA

Coding sequence (CDS) from alignment at chr21:715238..717151-

>NO21G02380.1 ID=NO21G02380.1|Name=NO21G02380.1|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at chr21:715238..717151- (Nannochloropsis oceanica)
ATGGCTGTTCGAGTAACTCGCGGGACAAGCATCCTGAGCGAGCTTCGGGG
TCGATTTCGCTATCCTGGCTCCGCCTCTTTCAGACAAGAAGGAGACGAGC
AGCAGCAGCAGGAGCAGCAGCAATTGGAGGAAGAAGACGCAGAGGCAGGG
GAGCAGCACACGATGGCGGCCTTGGACAGTGATTCAGATGCTACAGTGAA
CACGGATCCTTTGAGTGAGCTTGAAGAATACTTCCCCGCGGGCGAGGAGG
ACGACGACATCGAGGACAAGGACGAGGAGGAGGAGGTGGAGGGACACGAT
GGTGGCACCACCCGCAAGCAGGGCTTATATCCTTCAATCCTGATCGAAGA
CCAGCAAGAAAAAGGAGAGACGACAACGTTATCTCCCTCCTCAATCTTGT
CCCTGGTGGAGAAACGACTCCACCACAACCAAGCGTCTGCTGCCCTCCCT
CGTGGTGCTCCTACCGGCGCAGGAACCTCTCCCTCCATCCCGCAAACCTC
CGACGCCTCCCAGCCGTCGAGCTCTCCCTCCATCCCTCCTTCTTTCTCCT
CCTCCCCTTCTCCGTCAAAGAAAGCAAGCCCCTTCTTCCAACTCATAGAA
CGAAGGCAATCTTCTTCCTCCACTGTTTTAGGGCTTAATTCTCCCTTCCC
TTCCTCCCTTCGTACACCCGCCTCAGCCGCGACCGATGCTGGAGAAAAGA
GGGAAGGCAAGAGGGAAAAAATGCAGGGAGGGGAAGAGACGCCCAAGACG
ACGTCAATGTTTGCATTTTACCCCCTCAAGACTAGGACGGAGGGGGGGAA
CGAAGGGAGGAAGGAGGGAGGGAGGGAGGAGGGAATGGAGAGAGAGAAGG
AGGTCACGAAGCGCTTCATTCGTTCCCTTGACATCTATGGTTTGTGCGCG
GAAGGCAGGAAGGGGAACGGAGAAATGGGTGAGGAGGGATTTGACATGAG
CGAGGAAAAGCAAATGTGTTTGTTGGGAAGTCGGGGGGACAATGCGCTGT
TGCTGGCTGCCCGTTTGAATGATGCAGAGATGGTGAGGAGACTCCTTGAA
GAGGGGAGATGGAAGAGTGATGTGAGAAATGCGTATGGTGAGACACTGCT
CCACCTGGCGGTGAGTGGTGGGAGAGGCCATGTCTCTCTCTTGCCTTTCC
TGGGAATATTAGTCGGAGAGGGAAGGAGGGTGGGAGGGACGGAGGGAGGG
AATGTGGGTGGGTGGAATGTTCGGACTGTCCTCGGAAGGACGCCGTGGAT
GGAGGCGGCGGTGTGTGGTAATATAGAGGGTTTGAAGGCATTGTGGAGGG
AGGGAGGGAGGGAGGGCGGGCTGGAGGTCGGGGCCGTTGATAATGATGGG
AGGAACGCCTTACATCTCGCTGTCATGTATCGGCAGGAAGAGGCAGTTTA
TTGGTTGGTCGAGAGGGATGGAGGAAGAGAGGGCGATGGATGGAGGAAGG
GAGTGTTGTTACAGGGGAGGGATAAGGATGGGATGACACCGCTTCATTTT
GCGGCCATGTACAACAGTGTGAAATTGGCGCAGATGCTTTTGAACGAGGG
AGGAAGTGAGGGAGGGAGGGCGAGGACGAAGGAAGGGGAAACCCCAATGC
AGGTGGCGGAGAGATTTGGGCATGTGTGGACGAGGAGGGCTCTGGAAATA
ATGATGGAGGAGGCAAAGGACGAGGAAAGGGGGGTGGAAGGGGAGGAGGA
AGAGGGGGCGATGGAGAGTCAGACAAACAGCAAGGCTAGATTGCACAAGT
GGAACGGAGGGAAGGGGGAAGGGAGGGAGGAAGTAAGCGGGGGAATGCAG
GTGAGGATAATGGTGGGGGGGAGGGAAGTGATTTTGGAGGGGATGCAAAT
TGAATGTGTCGAGATAGTGGGGGGATGGGAGAGAGGGAGAGAGGGAGGGG
GGTTGGCGATGTAA

Synonyms

Publications