|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr21 | genome | chr21:574177..576398 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01950.1 vs.
Match: EWM22696.1 (hypothetical protein Naga_100340g5 [Nannochloropsis gaditana]) HSP 1 Score: 199.1 bits (505), Expect = 4.400e-47 Identity = 126/247 (51.01%), Postives = 159/247 (64.37%), Query Frame = 0
Query: 430 AATIATPEEEGGKEGGREGLFMTLYAHPDFEAEFGGLVGTVFAEAVSGIGGGRSTASSSSSSSRSSSSKTASSESSSPSPSFLLHPASLSDAGPGTTVFYIAFVCTGRLDDPVHMHALHPFFSAGASIVLFLIRAGRGSQLARIQPLQELAGLPCFEFLVFKKTLQRGREEGYEREVGALRSFMSRAMPSLGRAIGAGRGRAVEGVAGGGA----VASTSQPSLELPPLTNFLFDSSSLSGEEQRHQ 673
AA E+ ++ G EG+ MTLYAHP+FEAEFG LVGTV A+AVS G T+ + E++SP+P LL PAS S AGPGT + Y+AFVCTGRLDDP+H HAL PF +AGAS+VLFL+RAGRG+Q+ARIQP QEL GLPCFEFLVFK+ LQR E+GY +EV LRSF+ +++PSL R A G A EGV G + + LP LT++LF + + H+
Sbjct: 13 AACKEDDSEQAARDRG-EGV-MTLYAHPEFEAEFGELVGTVIADAVSDDPPGAKTSRGTKGGH----------EAASPTPPCLL-PASPSKAGPGTLLLYVAFVCTGRLDDPIHTHALKPFLAAGASVVLFLLRAGRGNQVARIQPRQELTGLPCFEFLVFKRALQR-TEDGYAKEVRLLRSFLVKSLPSL-RVQSADLGAATEGVTAEGVRPGKYGAPADEQKGLPSLTDYLFRHRTDNNNSHHHE 244
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G01950.1 ID=NO21G01950.1|Name=NO21G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2070bp
ATGGACGTGCTGGAAAGATACGGAGAGTTACGACGCGTAGAGCAGCAACA
GGTGCAGCAGTGGGTGGGGGATGATGGGGAGGTGATGGTAGGGATGGGGA
AGGGAGGAGGGAGGGAGAGCGAAGCAGTCCTCCCGACTCCCTATCATTGT
CACCAACATGAAAGAGAAGACGAACAAGAACAGGAGAAAGAGGAGGGCGA
TAAGCAGCAACAGCAGGAGCACCGACCGCGTCAGCCACATCAGGAGCAGC
AGCAGAAGCAACATCAGCAACAACAACAGCAGCTCGAACAGCAACTCCTG
TGTCTACAGCAAGAGCATCGATCCCTCCGGACGCAATTTCACGCCGTTCA
GCATGGCGCAAGTGTGCTGGGAGAGGAAGCGGCCAGGGCGAACGAAGAAT
TGGACCGATGTACAGAACTCGTCGAGAACCTGGAAGCGCACTGTTTGGAA
TGCGAGGAGGAGATAGACACCTTAAACCGAGCCCTGGGCCGGGTGGAGGA
AGTAAAGGAGGATGCCGAGCAGCAACAGCGGGTGTGGGAGGAGAGATGTA
GGAGGACTGAAGGGATGATGCGGCTGGTGTTGGAGAGAGAGCAAGGGCTC
CTGAAAGAGAACGAACGCCTGCGGGAAGAGCTGAAGGAAATAAGGAGACG
AGCGATCGAGTATGAAGGGATGGTAGCTGCTGCTGCGGCAGCAGGAGGCA
GGAGGAGGATGGGGAGGGAGAGCAGGAGGGAGGGAGGTGGAGGAAGGGAG
GGAGGACCGCTGGCCATGGCGCCGACGAGGTCTGGAGGGAGGGTGGGGAA
GCTGGGCATGTTTCCATCGCCTTCCCCCTTGCCTAATGTTTCTTTCACGT
CCTCCTCCCTCTCCTCCCTCTCCTCTCCTCCCACCTCTTGTGCGTCTGCG
CTCACTGCGCTCGATGCGAATACGGAGGCGAGAGCTGCTGTGGGCGGAAA
TAGGGCAGAGGAAGGGAAAGGAGGGAGCGGGAAGAGATTGACTGGAAGAA
GAATGTTTATGGCCGTGCCCGACGCGCTGAGAAGGGTGAATGTGAAAGGA
GTAGGAGAATCAGGTAGAGGGGGAGGAGAGGGACGAGATGGTATGGGAGA
AGACGGGCCACAGGGCCAGCTGGGCCGGCCGCGAGGGATCAGTGAAGGAC
CTTCAACTGTTTATTTGGCGCAGGAGGAAGGAGCGGAGCGGCGAGAGGAG
GGGGAGGATAAAGAAGAAGAGAAAGCTCAAAAAGAGCAGGAGCAAGAACA
GGAGCGGAAGCCGCAGCAGCTTGTGAAGATGACCATGGCGGCCACTATCG
CAACACCAGAAGAGGAGGGAGGGAAAGAGGGAGGGAGGGAAGGACTCTTT
ATGACACTATACGCCCATCCTGATTTTGAAGCTGAGTTCGGGGGGTTGGT
CGGGACTGTCTTTGCCGAGGCTGTGTCCGGCATTGGTGGTGGTAGGAGTA
CTGCTAGCAGCAGCAGCAGCAGCAGCAGAAGCTCTTCTTCGAAAACAGCA
TCCTCTGAATCTTCGTCACCCTCGCCCTCCTTCCTCCTTCATCCGGCTTC
CCTTTCCGACGCCGGCCCGGGAACCACCGTCTTTTACATCGCCTTTGTCT
GCACTGGCCGTCTGGACGACCCAGTCCACATGCACGCCCTCCATCCCTTC
TTTTCCGCCGGGGCCTCGATTGTCTTATTCTTGATCAGGGCGGGCCGGGG
GAGTCAGCTGGCGCGCATTCAGCCACTGCAGGAATTAGCTGGGCTCCCGT
GCTTCGAGTTCTTGGTGTTTAAAAAAACGTTGCAGAGGGGCCGGGAGGAG
GGGTATGAGAGGGAGGTAGGAGCGTTGAGGAGTTTTATGTCTAGGGCGAT
GCCATCGTTGGGGAGGGCTATCGGAGCAGGGAGAGGTCGAGCAGTCGAAG
GAGTAGCCGGAGGAGGAGCAGTAGCGTCAACGAGTCAACCATCGTTGGAG
TTACCGCCATTGACGAACTTCTTGTTCGATTCATCGTCCTTGTCTGGCGA
AGAGCAACGCCATCAGCTCAGGCACGAGGAAGAGAATGGTGGGGATGACA
TAGAGTATCTGGTACCCTGA back to topprotein sequence of NO21G01950.1 >NO21G01950.1-protein ID=NO21G01950.1-protein|Name=NO21G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=690bp
MDVLERYGELRRVEQQQVQQWVGDDGEVMVGMGKGGGRESEAVLPTPYHC
HQHEREDEQEQEKEEGDKQQQQEHRPRQPHQEQQQKQHQQQQQQLEQQLL
CLQQEHRSLRTQFHAVQHGASVLGEEAARANEELDRCTELVENLEAHCLE
CEEEIDTLNRALGRVEEVKEDAEQQQRVWEERCRRTEGMMRLVLEREQGL
LKENERLREELKEIRRRAIEYEGMVAAAAAAGGRRRMGRESRREGGGGRE
GGPLAMAPTRSGGRVGKLGMFPSPSPLPNVSFTSSSLSSLSSPPTSCASA
LTALDANTEARAAVGGNRAEEGKGGSGKRLTGRRMFMAVPDALRRVNVKG
VGESGRGGGEGRDGMGEDGPQGQLGRPRGISEGPSTVYLAQEEGAERREE
GEDKEEEKAQKEQEQEQERKPQQLVKMTMAATIATPEEEGGKEGGREGLF
MTLYAHPDFEAEFGGLVGTVFAEAVSGIGGGRSTASSSSSSSRSSSSKTA
SSESSSPSPSFLLHPASLSDAGPGTTVFYIAFVCTGRLDDPVHMHALHPF
FSAGASIVLFLIRAGRGSQLARIQPLQELAGLPCFEFLVFKKTLQRGREE
GYEREVGALRSFMSRAMPSLGRAIGAGRGRAVEGVAGGGAVASTSQPSLE
LPPLTNFLFDSSSLSGEEQRHQLRHEEENGGDDIEYLVP* back to topmRNA from alignment at chr21:574177..576398- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G01950.1 ID=NO21G01950.1|Name=NO21G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2222bp|location=Sequence derived from alignment at chr21:574177..576398- (Nannochloropsis oceanica)
ATGGACGTGCTGGAAAGATACGGAGAGTTACGACGCGTAGAGCAGCAACA
GGTGCAGCAGTGGGTGGGGGATGATGGGGAGGTGATGGTAGGGATGGGGA
AGGGAGGAGGGAGGGAGAGCGAAGCAGTCCTCCCGACTCCCTATCATTGT
CACCAACATGAAAGAGAAGACGAACAAGAACAGGAGAAAGAGGAGGGCGA
TAAGCAGCAACAGCAGGAGCACCGACCGCGTCAGCCACATCAGGAGCAGC
AGCAGAAGCAACATCAGCAACAACAACAGCAGCTCGAACAGCAACTCCTG
TGTCTACAGCAAGAGCATCGATCCCTCCGGACGCAATTTCACGCCGTTCA
GCATGGCGCAAGTGTGCTGGGAGAGGAAGCGGCCAGGGCGAACGAAGAAT
TGGACCGATGTACAGGTGCGAGGGAGGTAGGGAGGAAGAGAAGAAAGGTG
GCAGGGAGGAAGGGAGGGGCATGTGTGTTCTGCCTTTGACTGAATCAACC
ACACCACATGGCGTACACGGGATTTCTTTCTCACCAGCCCTCCTCCCTCT
TGACCCTCAATGTACAGAACTCGTCGAGAACCTGGAAGCGCACTGTTTGG
AATGCGAGGAGGAGATAGACACCTTAAACCGAGCCCTGGGCCGGGTGGAG
GAAGTAAAGGAGGATGCCGAGCAGCAACAGCGGGTGTGGGAGGAGAGATG
TAGGAGGACTGAAGGGATGATGCGGCTGGTGTTGGAGAGAGAGCAAGGGC
TCCTGAAAGAGAACGAACGCCTGCGGGAAGAGCTGAAGGAAATAAGGAGA
CGAGCGATCGAGTATGAAGGGATGGTAGCTGCTGCTGCGGCAGCAGGAGG
CAGGAGGAGGATGGGGAGGGAGAGCAGGAGGGAGGGAGGTGGAGGAAGGG
AGGGAGGACCGCTGGCCATGGCGCCGACGAGGTCTGGAGGGAGGGTGGGG
AAGCTGGGCATGTTTCCATCGCCTTCCCCCTTGCCTAATGTTTCTTTCAC
GTCCTCCTCCCTCTCCTCCCTCTCCTCTCCTCCCACCTCTTGTGCGTCTG
CGCTCACTGCGCTCGATGCGAATACGGAGGCGAGAGCTGCTGTGGGCGGA
AATAGGGCAGAGGAAGGGAAAGGAGGGAGCGGGAAGAGATTGACTGGAAG
AAGAATGTTTATGGCCGTGCCCGACGCGCTGAGAAGGGTGAATGTGAAAG
GAGTAGGAGAATCAGGTAGAGGGGGAGGAGAGGGACGAGATGGTATGGGA
GAAGACGGGCCACAGGGCCAGCTGGGCCGGCCGCGAGGGATCAGTGAAGG
ACCTTCAACTGTTTATTTGGCGCAGGAGGAAGGAGCGGAGCGGCGAGAGG
AGGGGGAGGATAAAGAAGAAGAGAAAGCTCAAAAAGAGCAGGAGCAAGAA
CAGGAGCGGAAGCCGCAGCAGCTTGTGAAGATGACCATGGCGGCCACTAT
CGCAACACCAGAAGAGGAGGGAGGGAAAGAGGGAGGGAGGGAAGGACTCT
TTATGACACTATACGCCCATCCTGATTTTGAAGCTGAGTTCGGGGGGTTG
GTCGGGACTGTCTTTGCCGAGGCTGTGTCCGGCATTGGTGGTGGTAGGAG
TACTGCTAGCAGCAGCAGCAGCAGCAGCAGAAGCTCTTCTTCGAAAACAG
CATCCTCTGAATCTTCGTCACCCTCGCCCTCCTTCCTCCTTCATCCGGCT
TCCCTTTCCGACGCCGGCCCGGGAACCACCGTCTTTTACATCGCCTTTGT
CTGCACTGGCCGTCTGGACGACCCAGTCCACATGCACGCCCTCCATCCCT
TCTTTTCCGCCGGGGCCTCGATTGTCTTATTCTTGATCAGGGCGGGCCGG
GGGAGTCAGCTGGCGCGCATTCAGCCACTGCAGGAATTAGCTGGGCTCCC
GTGCTTCGAGTTCTTGGTGTTTAAAAAAACGTTGCAGAGGGGCCGGGAGG
AGGGGTATGAGAGGGAGGTAGGAGCGTTGAGGAGTTTTATGTCTAGGGCG
ATGCCATCGTTGGGGAGGGCTATCGGAGCAGGGAGAGGTCGAGCAGTCGA
AGGAGTAGCCGGAGGAGGAGCAGTAGCGTCAACGAGTCAACCATCGTTGG
AGTTACCGCCATTGACGAACTTCTTGTTCGATTCATCGTCCTTGTCTGGC
GAAGAGCAACGCCATCAGCTCAGGCACGAGGAAGAGAATGGTGGGGATGA
CATAGAGTATCTGGTACCCTGA back to topCoding sequence (CDS) from alignment at chr21:574177..576398- >NO21G01950.1 ID=NO21G01950.1|Name=NO21G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=2070bp|location=Sequence derived from alignment at chr21:574177..576398- (Nannochloropsis oceanica)
ATGGACGTGCTGGAAAGATACGGAGAGTTACGACGCGTAGAGCAGCAACA
GGTGCAGCAGTGGGTGGGGGATGATGGGGAGGTGATGGTAGGGATGGGGA
AGGGAGGAGGGAGGGAGAGCGAAGCAGTCCTCCCGACTCCCTATCATTGT
CACCAACATGAAAGAGAAGACGAACAAGAACAGGAGAAAGAGGAGGGCGA
TAAGCAGCAACAGCAGGAGCACCGACCGCGTCAGCCACATCAGGAGCAGC
AGCAGAAGCAACATCAGCAACAACAACAGCAGCTCGAACAGCAACTCCTG
TGTCTACAGCAAGAGCATCGATCCCTCCGGACGCAATTTCACGCCGTTCA
GCATGGCGCAAGTGTGCTGGGAGAGGAAGCGGCCAGGGCGAACGAAGAAT
TGGACCGATGTACAGAACTCGTCGAGAACCTGGAAGCGCACTGTTTGGAA
TGCGAGGAGGAGATAGACACCTTAAACCGAGCCCTGGGCCGGGTGGAGGA
AGTAAAGGAGGATGCCGAGCAGCAACAGCGGGTGTGGGAGGAGAGATGTA
GGAGGACTGAAGGGATGATGCGGCTGGTGTTGGAGAGAGAGCAAGGGCTC
CTGAAAGAGAACGAACGCCTGCGGGAAGAGCTGAAGGAAATAAGGAGACG
AGCGATCGAGTATGAAGGGATGGTAGCTGCTGCTGCGGCAGCAGGAGGCA
GGAGGAGGATGGGGAGGGAGAGCAGGAGGGAGGGAGGTGGAGGAAGGGAG
GGAGGACCGCTGGCCATGGCGCCGACGAGGTCTGGAGGGAGGGTGGGGAA
GCTGGGCATGTTTCCATCGCCTTCCCCCTTGCCTAATGTTTCTTTCACGT
CCTCCTCCCTCTCCTCCCTCTCCTCTCCTCCCACCTCTTGTGCGTCTGCG
CTCACTGCGCTCGATGCGAATACGGAGGCGAGAGCTGCTGTGGGCGGAAA
TAGGGCAGAGGAAGGGAAAGGAGGGAGCGGGAAGAGATTGACTGGAAGAA
GAATGTTTATGGCCGTGCCCGACGCGCTGAGAAGGGTGAATGTGAAAGGA
GTAGGAGAATCAGGTAGAGGGGGAGGAGAGGGACGAGATGGTATGGGAGA
AGACGGGCCACAGGGCCAGCTGGGCCGGCCGCGAGGGATCAGTGAAGGAC
CTTCAACTGTTTATTTGGCGCAGGAGGAAGGAGCGGAGCGGCGAGAGGAG
GGGGAGGATAAAGAAGAAGAGAAAGCTCAAAAAGAGCAGGAGCAAGAACA
GGAGCGGAAGCCGCAGCAGCTTGTGAAGATGACCATGGCGGCCACTATCG
CAACACCAGAAGAGGAGGGAGGGAAAGAGGGAGGGAGGGAAGGACTCTTT
ATGACACTATACGCCCATCCTGATTTTGAAGCTGAGTTCGGGGGGTTGGT
CGGGACTGTCTTTGCCGAGGCTGTGTCCGGCATTGGTGGTGGTAGGAGTA
CTGCTAGCAGCAGCAGCAGCAGCAGCAGAAGCTCTTCTTCGAAAACAGCA
TCCTCTGAATCTTCGTCACCCTCGCCCTCCTTCCTCCTTCATCCGGCTTC
CCTTTCCGACGCCGGCCCGGGAACCACCGTCTTTTACATCGCCTTTGTCT
GCACTGGCCGTCTGGACGACCCAGTCCACATGCACGCCCTCCATCCCTTC
TTTTCCGCCGGGGCCTCGATTGTCTTATTCTTGATCAGGGCGGGCCGGGG
GAGTCAGCTGGCGCGCATTCAGCCACTGCAGGAATTAGCTGGGCTCCCGT
GCTTCGAGTTCTTGGTGTTTAAAAAAACGTTGCAGAGGGGCCGGGAGGAG
GGGTATGAGAGGGAGGTAGGAGCGTTGAGGAGTTTTATGTCTAGGGCGAT
GCCATCGTTGGGGAGGGCTATCGGAGCAGGGAGAGGTCGAGCAGTCGAAG
GAGTAGCCGGAGGAGGAGCAGTAGCGTCAACGAGTCAACCATCGTTGGAG
TTACCGCCATTGACGAACTTCTTGTTCGATTCATCGTCCTTGTCTGGCGA
AGAGCAACGCCATCAGCTCAGGCACGAGGAAGAGAATGGTGGGGATGACA
TAGAGTATCTGGTACCCTGA back to top
|