NO21G01890.2, NO21G01890.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01890.2
Unique NameNO21G01890.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2001
Alignment locationchr21:562627..564988 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:562627..564988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G01890.2 vs.
Match: XP_005854131.1 (pap fibrillin family protein [Nannochloropsis gaditana CCMP526]; EKU22229.1 pap fibrillin family protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 363.2 bits (931), Expect = 5.600e-97
Identity = 178/211 (84.36%), Postives = 200/211 (94.79%), Query Frame = 0 
Query:    2 ELQQELLLLLVGQNKGFSVSESDREDIEDTLRDLEAINPNPRPTESFSHGTSPLSGTWRLIYTDALDVLVLGLVPIAVIGKVYQNISPNGASIANVVELSQGASQLSFFPLLGKFGDSMARLRVEASSEVLSPSRLSLTFKSAGFEPITLFGMEVGKQLSLPKLDFPNSPNVGWIESTYVDDKIRIGRSPGGIGGKGSVFVFVREGGAGRW 213
            ELQ +LLLLLVGQNKGFSVSES+REDI+DTLRDLEA+NP PRPTE+FS GTSPLSGTWRL+YTDALDVLVLGLVP+AVIGKV+QNISP+G SIANVVE+SQGASQLSFFPLLGK GDS ARLRVEA+SE+LSP+RLSLTF+SAGFEP+TLFGMEV +QL +PK+DF  SPNVGWIE+TYVD+KIRIGRSPGG+GG+GSVFVFVREGGAG W
Sbjct:  102 ELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPGGLGGQGSVFVFVREGGAGMW 312
The following BLAST results are available for this feature:
BLAST of NO21G01890.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854131.15.600e-9784.36pap fibrillin family protein [Nannochloropsis gadi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01890NO21G01890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01890.2NO21G01890.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01890.2.cds1NO21G01890.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01890.2.cds2NO21G01890.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01890.2.cds3NO21G01890.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01890.2 ID=NO21G01890.2|Name=NO21G01890.2|organism=Nannochloropsis oceanica|type=mRNA|length=2001bp
GGCTAGGATGGGCGTCGCGGCCTGCTAGAGATAATCGTGCGTAAGGATGT
CAAACGTCTTAGAAATTGTTGTCTACGTGCTTGGATTCTGTCGTAAAGAG
CCAAAAATGCAGGTATGAGTGAAGCAAGAGAATAGCCTGCTCGACCCTCG
ACTTAATTGAACCAAGCTTGTGGTGATGCACTCTTGCTCGCTTTTTTAGA
CCCAATCTCATGTCCCACGCTGTCAACGACAGCCCACATCCTAATACAGG
CCATTATACATACCGTCGTCATGATAATGATGGGCATGCGCCGCGTTGGA
GTGCTTTTCGTATTGATTTTGGCCGCTGCGCACGCTTTTCTTTTATCCCC
CTCCAAGCCCGCGTCGTTGAGGGCTCGTCCAAGCGCATGTAAGCACTCGC
AAGGATGTACAACGTGTGCTTGTACATACTGGAATAAATATTCATAATTA
TTCTGTCTTTGGATGCTTGGCACATTTTCCTACAGTCTAAATTGCGACTA
TCGTTCACTCCCTTTCCTCTGCCCCACCCCATCCCACACACACCAGCTGT
CTCGCTGCACCACCGCACAGTAGCACGGACTTCATCACCAGCTTTCCTCC
TCGCCGCTGCCAGTGATCAGCCTGACTGGCCAAGTGACAGCAGCGACGAC
AATTACGCGGATGAAGTCGAGCAAGTGACCGACGTGGTAGACGCCACGGC
CAGTAAAACCACTTTGATGGAACTCCAGCAAGAACTCCTCCTCCTCCTCG
TCGGGCAAAATAAAGGATTTTCCGTATCGGAGTCTGATAGGGAGGACATA
GAGGACACGCTGCGTGACTTGGAAGCAATTAATCCCAACCCTCGTCCCAC
CGAGTCCTTCTCCCACGGAACGTCGCCGCTTTCGGGAACGTGGAGACTTA
TCTATACAGACGCCCTAGACGTCCTCGTCCTGGGCTTGGTTCCCATCGCC
GTCATCGGCAAGGTCTACCAAAACATCTCTCCCAACGGCGCAAGCATTGC
CAACGTGGTGGAGCTAAGCCAAGGCGCGAGTCAACTCTCCTTCTTTCCCC
TACTAGGTAAATTCGGAGATAGCATGGCACGACTCCGTGTGGAGGCCTCC
TCGGAGGTCCTCTCCCCTTCCAGGCTATCGCTCACATTCAAGAGCGCGGG
GTTTGAGCCCATAACGCTTTTCGGAATGGAGGTGGGAAAGCAGCTGTCAC
TGCCAAAGCTGGACTTCCCAAACAGTCCCAACGTGGGGTGGATTGAAAGC
ACTTACGTCGACGATAAAATCAGGATTGGCCGTTCGCCAGGGGGAATAGG
CGGAAAGGGGAGTGTGTTTGTGTTTGTCCGGGAGGGCGGGGCAGGACGGT
GGGCGGAGGGGAGGACAGCATGAGCTCTGTAACCTCCCCCCCCTTGGTCA
CTTGACGGGTTATTGGGGCTTATGTCCTTGGAAATTACTTAGTGGGGTTG
TTTAGGGTGAGACACATGTAACATGGAACGGCTCAAAAGAAGAAATTATA
CCCGTGGTTAACCTGAAGGAGGGGGAGCGTATGCGCCCGGCCCAAGTCGT
GTGCCTCGGACTTGACTGCCGTCCCGTCAAAGCCATTCGAGATTCGGCAG
AAATAAGGGAAGAATATGCAACAATGCAACGTTGGAAGGCTTACCCTCGT
ATGTTATCCTGTGACGTGGCGGACTTGTGCACTGGTAAGTAGCATTTGTT
CGCGGGTATAGGTTGTACGAGATAATTTTAGGATTGTAGGAAACTACAGA
AAAATAATTACTCCGGATTTACCACCCAACTTGCACTTGTTGCTCGTGTT
CCTTTGCTGCTATCGATACAGGTATGCTTTAGAGACTTCAGCATAGGTGC
TTGCACGTCCACCTCCTTTCGCACACTGCCTTGTTGAAGGAATGGCTTGC
GCCGAACGATAGTCCCTTGACTTCAACTCCTCAACCCCTCCCCTCTCTTC
CCCCACGACAAGGCAAAAATCGTGTGAGAATCACTCAACCAAACTCTCGC
A
back to top

protein sequence of NO21G01890.2

>NO21G01890.2-protein ID=NO21G01890.2-protein|Name=NO21G01890.2|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MELQQELLLLLVGQNKGFSVSESDREDIEDTLRDLEAINPNPRPTESFSH
GTSPLSGTWRLIYTDALDVLVLGLVPIAVIGKVYQNISPNGASIANVVEL
SQGASQLSFFPLLGKFGDSMARLRVEASSEVLSPSRLSLTFKSAGFEPIT
LFGMEVGKQLSLPKLDFPNSPNVGWIESTYVDDKIRIGRSPGGIGGKGSV
FVFVREGGAGRWAEGRTA*
back to top

mRNA from alignment at chr21:562627..564988+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01890.2 ID=NO21G01890.2|Name=NO21G01890.2|organism=Nannochloropsis oceanica|type=mRNA|length=2362bp|location=Sequence derived from alignment at chr21:562627..564988+ (Nannochloropsis oceanica)
GGCTAGGATGGGCGTCGCGGCCTGCTAGAGATAATCGTGCGTAAGGATGT
CAAACGTCTTAGAAATTGTTGTCTACGTGCTTGGATTCTGTCGTAAAGAG
CCAAAAATGCAGGTATGAGTGAAGCAAGAGAATAGCCTGCTCGACCCTCG
ACTTAATTGAACCAAGCTTGTGGTGATGCACTCTTGCTCGCTTTTTTAGA
CCCAATCTCATGTCCCACGCTGTCAACGACAGCCCACATCCTAATACAGG
CCATTATACATACCGTCGTCATGATAATGATGGGCATGCGCCGCGTTGGA
GTGCTTTTCGTATTGATTTTGGCCGCTGCGCACGCTTTTCTTTTATCCCC
CTCCAAGCCCGCGTCGTTGAGGGCTCGTCCAAGCGCATGTAAGCACTCGC
AAGGATGTACAACGTGTGCTTGTACATACTGGAATAAATATTCATAATTA
TTCTGTCTTTGGATGCTTGGCACATTTTCCTACAGTCTAAATTGCGACTA
TCGTTCACTCCCTTTCCTCTGCCCCACCCCATCCCACACACACCAGCTGT
CTCGCTGCACCACCGCACAGTAGCACGGACTTCATCACCAGCTTTCCTCC
TCGCCGCTGCCAGTGATCAGCCTGACTGGCCAAGTGACAGCAGCGACGAC
AATTACGCGGATGAAGTCGAGCAAGTGACCGACGTGGTAGACGCCACGGC
CAGTAAAACCACTTTGATGGAACTCCAGCAAGAACTCCTCCTCCTCCTCG
TCGGGCAAAATAAAGGATTTTCCGTATCGGAGTCTGATAGGGAGGACATA
GAGGACACGCTGCGTGACTTGGAAGCAATTAATCCCAACCCTCGTCCCAC
CGAGTCCTTCTCCCACGGAACGTCGCCGCTTTCGGGAACGTGGAGACTTA
TCTATACAGGTAAAAGGACAGGAAATAGGAAGAGAAAGGGAGGGGATCTA
GGGAACAAGGAAAAACTGAGGAAGAGTGTGAGTTAAAAGTATCATAAGCC
TGAGTAAAAGGTGTTTTTTTCAAGCTGGCCATTGGAACAGCATTCACACA
CTGCCTTCCAACCTCTCTTTCCTTGCCATCCTCATAGACGCCCTAGACGT
CCTCGTCCTGGGCTTGGTTCCCATCGCCGTCATCGGCAAGGTCTACCAAA
ACATCTCTCCCAACGGCGCAAGCATTGCCAACGTGGTGGAGCTAAGCCAA
GGCGCGAGTCAACTCTCCTTCTTTCCCCTACTAGGTAAATTCGGAGATAG
CATGGCACGACTCCGTGTGGAGGCCTCCTCGGAGGTCCTCTCCCCTTCCA
GGCTATCGCTCACATTCAAGAGCGCGGGGTTTGAGCCCATAACGCTTTTC
GGAATGGAGGTGGGAAAGCAGCTGTCACTGCCAAAGGTAAGGGAGGGAGG
GAGGGAGGAGAGCGAGGGGAGGGAGGGAGGAGCAGTTGGAGGAGGGACTA
AGGTAAGGGCGAAAGACATGTTAAAGAGTCAGGTGGTTGCCACATGAAAA
GCTTGCCTCAATAATATGTAACCCACTTGCGTCTCTTTTCGTTTTCCTTC
TATCCTCCCTCCATCTCAGCTGGACTTCCCAAACAGTCCCAACGTGGGGT
GGATTGAAAGCACTTACGTCGACGATAAAATCAGGATTGGCCGTTCGCCA
GGGGGAATAGGCGGAAAGGGGAGTGTGTTTGTGTTTGTCCGGGAGGGCGG
GGCAGGACGGTGGGCGGAGGGGAGGACAGCATGAGCTCTGTAACCTCCCC
CCCCTTGGTCACTTGACGGGTTATTGGGGCTTATGTCCTTGGAAATTACT
TAGTGGGGTTGTTTAGGGTGAGACACATGTAACATGGAACGGCTCAAAAG
AAGAAATTATACCCGTGGTTAACCTGAAGGAGGGGGAGCGTATGCGCCCG
GCCCAAGTCGTGTGCCTCGGACTTGACTGCCGTCCCGTCAAAGCCATTCG
AGATTCGGCAGAAATAAGGGAAGAATATGCAACAATGCAACGTTGGAAGG
CTTACCCTCGTATGTTATCCTGTGACGTGGCGGACTTGTGCACTGGTAAG
TAGCATTTGTTCGCGGGTATAGGTTGTACGAGATAATTTTAGGATTGTAG
GAAACTACAGAAAAATAATTACTCCGGATTTACCACCCAACTTGCACTTG
TTGCTCGTGTTCCTTTGCTGCTATCGATACAGGTATGCTTTAGAGACTTC
AGCATAGGTGCTTGCACGTCCACCTCCTTTCGCACACTGCCTTGTTGAAG
GAATGGCTTGCGCCGAACGATAGTCCCTTGACTTCAACTCCTCAACCCCT
CCCCTCTCTTCCCCCACGACAAGGCAAAAATCGTGTGAGAATCACTCAAC
CAAACTCTCGCA
back to top

Coding sequence (CDS) from alignment at chr21:562627..564988+

>NO21G01890.2 ID=NO21G01890.2|Name=NO21G01890.2|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at chr21:562627..564988+ (Nannochloropsis oceanica)
ATGGAACTCCAGCAAGAACTCCTCCTCCTCCTCGTCGGGCAAAATAAAGG
ATTTTCCGTATCGGAGTCTGATAGGGAGGACATAGAGGACACGCTGCGTG
ACTTGGAAGCAATTAATCCCAACCCTCGTCCCACCGAGTCCTTCTCCCAC
GGAACGTCGCCGCTTTCGGGAACGTGGAGACTTATCTATACAGACGCCCT
AGACGTCCTCGTCCTGGGCTTGGTTCCCATCGCCGTCATCGGCAAGGTCT
ACCAAAACATCTCTCCCAACGGCGCAAGCATTGCCAACGTGGTGGAGCTA
AGCCAAGGCGCGAGTCAACTCTCCTTCTTTCCCCTACTAGGTAAATTCGG
AGATAGCATGGCACGACTCCGTGTGGAGGCCTCCTCGGAGGTCCTCTCCC
CTTCCAGGCTATCGCTCACATTCAAGAGCGCGGGGTTTGAGCCCATAACG
CTTTTCGGAATGGAGGTGGGAAAGCAGCTGTCACTGCCAAAGCTGGACTT
CCCAAACAGTCCCAACGTGGGGTGGATTGAAAGCACTTACGTCGACGATA
AAATCAGGATTGGCCGTTCGCCAGGGGGAATAGGCGGAAAGGGGAGTGTG
TTTGTGTTTGTCCGGGAGGGCGGGGCAGGACGGTGGGCGGAGGGGAGGAC
AGCATGA
back to top
Synonyms
Publications