NO21G01860.1, NO21G01860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01860.1
Unique NameNO21G01860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1544
Alignment locationchr21:555688..557449 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:555688..557449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01860.1 vs.
Match: XP_002681273.1 (hypothetical protein NAEGRDRAFT_78553 [Naegleria gruberi]; EFC48529.1 hypothetical protein NAEGRDRAFT_78553 [Naegleria gruberi])

HSP 1 Score: 131.0 bits (328), Expect = 1.000e-26
Identity = 84/267 (31.46%), Postives = 140/267 (52.43%), Query Frame = 0 
Query:  124 VEATMPPGVAIRPNAFGLGLFATRSFQAGETLYITSCIYVPDIAAGKVTLRLTGSGEEYILDMQEHSVVQSDLPGKRQLYTYDAFMNHGCDPNTSSFVTACTNKELTYGMKALRGIATGEELTCDYNLFEFDAGDAAISLCQCGASGCLGAIKGFRYLRFEQALPRFAMAEPYVIASYLAEHPEVYFLDLRSQHSRGYEAEGGVSKGGEDEVGIEVTFDEEGGCKA---VATKAWASGEVLLRD--IQLPQAPQQHLQQEGEQQCLE 386
            +  T+P G+AI+   +G GLFAT+ F    ++Y+   I +P++ A + TL +T  G  + L+   HSV  ++   +R LY +D+FMNH CDP+T S  T        Y M ALR I  G+++TCDYN+FE+D     I  C CG+S C+G + GF+YL  E+   R    +  V+ + +AE P   F+ ++                 + +  I+    + G CK    VA++++ +GE + ++  I  P+     ++  G++  LE
Sbjct:    9 IHETIPEGIAIKAGEYGFGLFATKFFAKNSSVYVGRQIVIPNVYA-EFTL-ITDQGT-FKLNTDTHSVQFNE--NQRWLYLFDSFMNHSCDPSTISEQTEEMKITNQYAMVALRDINPGDQITCDYNIFEYDCHGKVIEKCCCGSSNCIGRVAGFKYLTLEEQKERIQFVDDEVLQA-MAEDPTNKFMFVK-----------------DLKCPIDRVIIQSGPCKGYRMVASRSYKAGETIFKNHSIIFPEDTNIVVELNGKRLWLE 252
The following BLAST results are available for this feature:
BLAST of NO21G01860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002681273.11.000e-2631.46hypothetical protein NAEGRDRAFT_78553 [Naegleria g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01860NO21G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01860.1NO21G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01860.1.cds1NO21G01860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01860.1.cds2NO21G01860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01860.1 ID=NO21G01860.1|Name=NO21G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp
GATGGACGACGACCGCTACCGCCGATGCGAGGCCGAAAGGGGCTGTCTGA
GGAAGAGGGATTCGAGGAAAAATGGGCGCTCCTGCTGTTTCTGCTCCTGT
CAAAGCAGTAGTTGCTGTTGCTGCTACTGGAGTGCTGGCGGGCGCGGCAT
GGGAACGATGGGGGAATAGAGGGGTGTTGTCTAAACCCGCTGAGGTCACT
GTTTGTTTGAAGGAGGAGGAGGCGCGGAGGTCGCGGTCTTCTTCTGGTGG
CAACACCTGCAACGGCATTCCACATGCGGCCGGCCTGTCCATGATCACCA
CCATTCAGAAGCATGTTACCGGTCCCACTTCCCCACCGACCATTTTCGAG
GAAGAAAAAGGGGTGGAAATCAGTACCAGCACCAGCAGCACCGGCACTAG
CACCAGCGACAGCCCCACAAACGCAAGCCTGCCCTTGTGCGTCGAGGCCA
CTATGCCGCCGGGAGTAGCAATCCGTCCCAACGCCTTTGGCCTCGGGCTA
TTTGCCACGCGATCATTTCAGGCGGGCGAAACGCTGTACATCACGTCTTG
CATCTACGTGCCAGACATCGCTGCGGGCAAGGTTACTTTACGACTCACCG
GCTCAGGAGAAGAGTACATCCTCGACATGCAAGAGCACTCGGTCGTTCAA
TCTGACCTACCGGGCAAGCGGCAGCTGTATACGTACGACGCGTTTATGAA
TCATGGATGCGACCCCAACACTTCCTCCTTCGTCACAGCCTGTACAAATA
AGGAGCTCACCTACGGGATGAAAGCCCTGCGTGGCATTGCTACGGGCGAA
GAACTTACCTGTGATTACAATCTGTTTGAATTCGACGCTGGGGACGCGGC
GATTTCCCTTTGTCAATGCGGGGCGAGCGGGTGCCTAGGTGCGATAAAGG
GCTTCCGGTATCTAAGATTTGAGCAGGCATTGCCGAGATTTGCGATGGCG
GAGCCCTATGTAATTGCTTCTTATCTGGCAGAACACCCGGAGGTATACTT
TTTAGACCTCCGGTCGCAGCATTCGAGGGGGTACGAGGCGGAGGGGGGAG
TGAGCAAAGGAGGGGAGGACGAGGTAGGGATAGAGGTCACGTTTGACGAA
GAGGGTGGATGCAAGGCCGTGGCGACCAAGGCGTGGGCGTCAGGTGAAGT
ACTGTTGAGGGACATCCAACTACCTCAGGCTCCACAGCAGCACCTGCAGC
AGGAGGGGGAGCAGCAGTGCCTAGAGGTGCGGAAGTCCCAGGCATTTGTT
GTGGTGCTGGCGCCGGGCGTCGCGCAGGGGTCGGCGTCGGTTGACTTGAC
GGGCTTTGGGATAGGAGGGAAAGATAGGGAGGAGAGGAAGAAGGGAGGGG
AGGAGATGAAGGAGACCTGGCCAATACGCCTCCTATTTGGTGGAGGAGCG
AGGAGGAAGGGCGAGGAGGGCGGTGCGAATATCCGAGTCGAGAGAGAGGG
AGGAAGGGAAGGAGAAAGGGAGACGTACAGGGTGGTTGTGACTGCGGCGA
TCGCGATGGGGCAGGCAGTGGTGGTCGGAATGGAGGAAAAATGA
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protein sequence of NO21G01860.1

>NO21G01860.1-protein ID=NO21G01860.1-protein|Name=NO21G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MGAPAVSAPVKAVVAVAATGVLAGAAWERWGNRGVLSKPAEVTVCLKEEE
ARRSRSSSGGNTCNGIPHAAGLSMITTIQKHVTGPTSPPTIFEEEKGVEI
STSTSSTGTSTSDSPTNASLPLCVEATMPPGVAIRPNAFGLGLFATRSFQ
AGETLYITSCIYVPDIAAGKVTLRLTGSGEEYILDMQEHSVVQSDLPGKR
QLYTYDAFMNHGCDPNTSSFVTACTNKELTYGMKALRGIATGEELTCDYN
LFEFDAGDAAISLCQCGASGCLGAIKGFRYLRFEQALPRFAMAEPYVIAS
YLAEHPEVYFLDLRSQHSRGYEAEGGVSKGGEDEVGIEVTFDEEGGCKAV
ATKAWASGEVLLRDIQLPQAPQQHLQQEGEQQCLEVRKSQAFVVVLAPGV
AQGSASVDLTGFGIGGKDREERKKGGEEMKETWPIRLLFGGGARRKGEEG
GANIRVEREGGREGERETYRVVVTAAIAMGQAVVVGMEEK*
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mRNA from alignment at chr21:555688..557449+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01860.1 ID=NO21G01860.1|Name=NO21G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp|location=Sequence derived from alignment at chr21:555688..557449+ (Nannochloropsis oceanica)
GATGGACGACGACCGCTACCGCCGATGCGAGGCCGAAAGGGGCTGTCTGA
GGAAGAGGGATTCGAGGAAAAATGGGCGCTCCTGCTGTTTCTGCTCCTGT
CAAAGCAGTAGTTGCTGTTGCTGCTACTGGAGTGCTGGCGGGCGCGGCAT
GGGAACGATGGGGGAATAGAGGGGTGTTGTCTAAACCCGCTGAGGTCACT
GTTTGTTTGAAGGAGGAGGAGGCGCGGAGGTCGCGGTCTTCTTCTGGTGG
CAACACCTGCAACGGCATTCCACATGCGGCCGGCCTGTGTATGTGGGTGG
AGAAGGTGTAAGTGTGTTGAGTGTGCGGCCCTGGATACATTCACGGCCTG
CTGCAATCGAGACTCCCATAGTCATCAAAAATCGCCTTTGGGCGAGGCGA
GGCCCGAGGCGTGCTCTTTTTCGAAGTTCGTGCCATCATCTGCACTTCGA
CTACCCGAACTCTCAACACACCACAACAATTGCCCCTTTTTACCGTTTTC
CTACAGCCATGATCACCACCATTCAGAAGCATGTTACCGGTCCCACTTCC
CCACCGACCATTTTCGAGGAAGAAAAAGGGGTGGAAATCAGTACCAGCAC
CAGCAGCACCGGCACTAGCACCAGCGACAGCCCCACAAACGCAAGCCTGC
CCTTGTGCGTCGAGGCCACTATGCCGCCGGGAGTAGCAATCCGTCCCAAC
GCCTTTGGCCTCGGGCTATTTGCCACGCGATCATTTCAGGCGGGCGAAAC
GCTGTACATCACGTCTTGCATCTACGTGCCAGACATCGCTGCGGGCAAGG
TTACTTTACGACTCACCGGCTCAGGAGAAGAGTACATCCTCGACATGCAA
GAGCACTCGGTCGTTCAATCTGACCTACCGGGCAAGCGGCAGCTGTATAC
GTACGACGCGTTTATGAATCATGGATGCGACCCCAACACTTCCTCCTTCG
TCACAGCCTGTACAAATAAGGAGCTCACCTACGGGATGAAAGCCCTGCGT
GGCATTGCTACGGGCGAAGAACTTACCTGTGATTACAATCTGTTTGAATT
CGACGCTGGGGACGCGGCGATTTCCCTTTGTCAATGCGGGGCGAGCGGGT
GCCTAGGTGCGATAAAGGGCTTCCGGTATCTAAGATTTGAGCAGGCATTG
CCGAGATTTGCGATGGCGGAGCCCTATGTAATTGCTTCTTATCTGGCAGA
ACACCCGGAGGTATACTTTTTAGACCTCCGGTCGCAGCATTCGAGGGGGT
ACGAGGCGGAGGGGGGAGTGAGCAAAGGAGGGGAGGACGAGGTAGGGATA
GAGGTCACGTTTGACGAAGAGGGTGGATGCAAGGCCGTGGCGACCAAGGC
GTGGGCGTCAGGTGAAGTACTGTTGAGGGACATCCAACTACCTCAGGCTC
CACAGCAGCACCTGCAGCAGGAGGGGGAGCAGCAGTGCCTAGAGGTGCGG
AAGTCCCAGGCATTTGTTGTGGTGCTGGCGCCGGGCGTCGCGCAGGGGTC
GGCGTCGGTTGACTTGACGGGCTTTGGGATAGGAGGGAAAGATAGGGAGG
AGAGGAAGAAGGGAGGGGAGGAGATGAAGGAGACCTGGCCAATACGCCTC
CTATTTGGTGGAGGAGCGAGGAGGAAGGGCGAGGAGGGCGGTGCGAATAT
CCGAGTCGAGAGAGAGGGAGGAAGGGAAGGAGAAAGGGAGACGTACAGGG
TGGTTGTGACTGCGGCGATCGCGATGGGGCAGGCAGTGGTGGTCGGAATG
GAGGAAAAATGA
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Coding sequence (CDS) from alignment at chr21:555688..557449+

>NO21G01860.1 ID=NO21G01860.1|Name=NO21G01860.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr21:555688..557449+ (Nannochloropsis oceanica)
ATGGGCGCTCCTGCTGTTTCTGCTCCTGTCAAAGCAGTAGTTGCTGTTGC
TGCTACTGGAGTGCTGGCGGGCGCGGCATGGGAACGATGGGGGAATAGAG
GGGTGTTGTCTAAACCCGCTGAGGTCACTGTTTGTTTGAAGGAGGAGGAG
GCGCGGAGGTCGCGGTCTTCTTCTGGTGGCAACACCTGCAACGGCATTCC
ACATGCGGCCGGCCTGTCCATGATCACCACCATTCAGAAGCATGTTACCG
GTCCCACTTCCCCACCGACCATTTTCGAGGAAGAAAAAGGGGTGGAAATC
AGTACCAGCACCAGCAGCACCGGCACTAGCACCAGCGACAGCCCCACAAA
CGCAAGCCTGCCCTTGTGCGTCGAGGCCACTATGCCGCCGGGAGTAGCAA
TCCGTCCCAACGCCTTTGGCCTCGGGCTATTTGCCACGCGATCATTTCAG
GCGGGCGAAACGCTGTACATCACGTCTTGCATCTACGTGCCAGACATCGC
TGCGGGCAAGGTTACTTTACGACTCACCGGCTCAGGAGAAGAGTACATCC
TCGACATGCAAGAGCACTCGGTCGTTCAATCTGACCTACCGGGCAAGCGG
CAGCTGTATACGTACGACGCGTTTATGAATCATGGATGCGACCCCAACAC
TTCCTCCTTCGTCACAGCCTGTACAAATAAGGAGCTCACCTACGGGATGA
AAGCCCTGCGTGGCATTGCTACGGGCGAAGAACTTACCTGTGATTACAAT
CTGTTTGAATTCGACGCTGGGGACGCGGCGATTTCCCTTTGTCAATGCGG
GGCGAGCGGGTGCCTAGGTGCGATAAAGGGCTTCCGGTATCTAAGATTTG
AGCAGGCATTGCCGAGATTTGCGATGGCGGAGCCCTATGTAATTGCTTCT
TATCTGGCAGAACACCCGGAGGTATACTTTTTAGACCTCCGGTCGCAGCA
TTCGAGGGGGTACGAGGCGGAGGGGGGAGTGAGCAAAGGAGGGGAGGACG
AGGTAGGGATAGAGGTCACGTTTGACGAAGAGGGTGGATGCAAGGCCGTG
GCGACCAAGGCGTGGGCGTCAGGTGAAGTACTGTTGAGGGACATCCAACT
ACCTCAGGCTCCACAGCAGCACCTGCAGCAGGAGGGGGAGCAGCAGTGCC
TAGAGGTGCGGAAGTCCCAGGCATTTGTTGTGGTGCTGGCGCCGGGCGTC
GCGCAGGGGTCGGCGTCGGTTGACTTGACGGGCTTTGGGATAGGAGGGAA
AGATAGGGAGGAGAGGAAGAAGGGAGGGGAGGAGATGAAGGAGACCTGGC
CAATACGCCTCCTATTTGGTGGAGGAGCGAGGAGGAAGGGCGAGGAGGGC
GGTGCGAATATCCGAGTCGAGAGAGAGGGAGGAAGGGAAGGAGAAAGGGA
GACGTACAGGGTGGTTGTGACTGCGGCGATCGCGATGGGGCAGGCAGTGG
TGGTCGGAATGGAGGAAAAATGA
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Synonyms
Publications