NO21G01830.4, NO21G01830.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01830.4
Unique NameNO21G01830.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1467
Alignment locationchr21:539201..540807 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:539201..540807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01830.4 vs.
Match: EWM22685.1 (rna-binding protein 42 [Nannochloropsis gaditana])

HSP 1 Score: 177.6 bits (449), Expect = 5.100e-41
Identity = 125/261 (47.89%), Postives = 152/261 (58.24%), Query Frame = 0 
Query:    1 MVDDDLFGFFNELKEVKPPAEEEA--AGGGGGSNDEGVQHIGPATPPGATGKRAREEEAEYNPFANEIGPAMPPANHPTFKEAKAVAAKPLLYD----------PPSLGPVEP--STQYQQQPQQAFAPPTSISAAPTKVVLVHDEQASPSSTFPLSAPAPYQSYMAPCPAATATAAAAPPPQVSGAGVGTLFTVGAGVKPAVGGGGVATGQQPAFGAARAASQAVGG----GKPKKFIRVGPGETWEDPTLIEWPESKYK 244
            M DDDLFGFFNELKEVK P EE    AG G     +  +H+G +T   A+GKR R+EE E    +++IGP MPP++HP FK+AKA AAKPLLY           P +  P+    S+   Q+   AFAP  S+SAAPT+      E + P+   P S+    Q +  P    TA     PP  V+GAGVGTLFTVGAG KPA G  G   GQQP  G          G    GKPKKFIRVGPG+TWEDPTL EWPE+ ++
Sbjct:    1 MADDDLFGFFNELKEVKAPEEEAGPNAGEGEAPEHQDGRHLG-STTLNASGKRGRDEEPEN--VSHDIGPTMPPSHHPAFKKAKAAAAKPLLYGTAGDGDGSHTPTASAPLASPYSSSGTQEKPSAFAPAISVSAAPTRA---RPESSVPA---PSSSVTASQDFSGPYSGTTA-----PPQAVAGAGVGTLFTVGAGAKPAAGTWGA--GQQPRPGGGPRPGGGTQGQTEAGKPKKFIRVGPGQTWEDPTLNEWPENDFR 245
The following BLAST results are available for this feature:
BLAST of NO21G01830.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22685.15.100e-4147.89rna-binding protein 42 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01830NO21G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01830.4NO21G01830.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01830.4.cds1NO21G01830.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01830.4.cds2NO21G01830.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01830.4 ID=NO21G01830.4|Name=NO21G01830.4|organism=Nannochloropsis oceanica|type=mRNA|length=1467bp
AACCACCAAGATAGCACTAAGCACACAGCTAATAATGGTGGACGATGACC
TTTTTGGGTTTTTCAACGAGCTGAAGGAAGTGAAGCCTCCTGCAGAGGAG
GAGGCAGCGGGAGGGGGAGGGGGAAGCAATGACGAGGGAGTGCAGCACAT
CGGCCCTGCCACCCCACCAGGGGCTACAGGAAAGCGCGCACGAGAAGAAG
AGGCCGAATATAATCCATTCGCCAACGAAATCGGCCCTGCTATGCCCCCC
GCCAACCATCCCACCTTCAAAGAAGCCAAGGCCGTAGCCGCCAAGCCCCT
CCTCTACGACCCCCCCTCACTTGGCCCCGTCGAACCCTCCACACAATACC
AACAACAACCACAACAAGCCTTTGCCCCCCCGACCTCTATCTCCGCCGCC
CCTACCAAAGTCGTGCTTGTCCACGACGAACAAGCATCACCGTCCTCCAC
CTTCCCTCTCTCCGCTCCTGCCCCCTACCAATCGTACATGGCTCCCTGCC
CCGCCGCAACAGCAACAGCAGCAGCAGCTCCTCCTCCCCAGGTTTCAGGC
GCGGGCGTCGGGACACTTTTTACGGTCGGTGCTGGTGTAAAGCCAGCAGT
GGGAGGAGGAGGAGTAGCAACGGGACAGCAGCCGGCGTTTGGAGCGGCAA
GGGCGGCTTCGCAGGCGGTGGGAGGTGGGAAACCTAAGAAGTTTATTAGA
GTGGGGCCTGGGGAGACGTGGGAGGATCCTACTTTGATCGAGTGGCCGGA
GAGTAAGTACAAGGGAGGGAGGAGGAAGGAGGAAGTGCGGGAGGAAGGGT
GAGTAGAGCGTACAATCCCTGACTTCTTTTCTACCTGCTCACACTATCTA
TTTCTATTTATGTTGTTTACACAGATGACTTTCGGTTGTTTTGCGGAGAC
TTGGGACCAGAGATCAACGATGAGGTACATTCATTTCAACCGTTTTGATA
TTTTTTTTATCGCTTGTCTCCCTGTTGCTTCAATACTTTTTCGCGTCTCA
CGAGCTCCATCTCTCCCTCCCTCTCTCCCTTCCTAGTTACTTGCCAAGGC
CTTCGAGGGCAAGTACCCCTCATTCGCCAAAGCCAAGGTGCTACGGGAAA
AGCAGACTGGCAAGAGCCGTGGGTATGGTTTCGTGTCTTTCCTCGACCCG
TTCGAGGGGCTCAAGGCCCTGAGGGAGATGAATGGGAGGTACATAGGGAG
TCGACCCGTGAAGCTGAAGAAGTGTGATTGGAAGAACAGGGACCTGAAAG
AGGTGCGGAAGAAGGAGAAGGCCAAGAAGAAGTTCTTGGGGAAGTTGGGT
TTGGGATGAGGGAAAGTCGGGGTGGGGGGTAGGGGGGAGAAAGGGATTGA
AAGGCGGGGGGGGGGCTTATGTAGGAGGGAGAGAAAGAGGGAAGGGGGAA
GATTTTGAGGAGAGGATGACTATCGCAAATACACAAGAAAGACGAAAGTA
AGCAAATTAAACAGTTG
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protein sequence of NO21G01830.4

>NO21G01830.4-protein ID=NO21G01830.4-protein|Name=NO21G01830.4|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MVDDDLFGFFNELKEVKPPAEEEAAGGGGGSNDEGVQHIGPATPPGATGK
RAREEEAEYNPFANEIGPAMPPANHPTFKEAKAVAAKPLLYDPPSLGPVE
PSTQYQQQPQQAFAPPTSISAAPTKVVLVHDEQASPSSTFPLSAPAPYQS
YMAPCPAATATAAAAPPPQVSGAGVGTLFTVGAGVKPAVGGGGVATGQQP
AFGAARAASQAVGGGKPKKFIRVGPGETWEDPTLIEWPESKYKGGRRKEE
VREEG*
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mRNA from alignment at chr21:539201..540807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01830.4 ID=NO21G01830.4|Name=NO21G01830.4|organism=Nannochloropsis oceanica|type=mRNA|length=1607bp|location=Sequence derived from alignment at chr21:539201..540807- (Nannochloropsis oceanica)
AACCACCAAGATAGCACTAAGCACACAGCTAATAATGGTGGACGATGACC
TTTTTGGGTTTTTCAACGAGCTGAAGGAAGTGAAGCCTCCTGCAGAGGAG
GAGGCAGCGGGAGGGGGAGGGGGAAGCAATGACGAGGGAGTGCAGCACAT
CGGCCCTGCCACCCCACCAGGGGCTACAGGAAAGCGCGCACGAGGTAAGG
GAGACTTTCAGGAAAAAGATGTCCGCGCGGTCCTTGAGGGAGGCATTTGC
ACGTGAGACGAATCATCATAATCATCCTCCTCTCATCCACCTTGTGTGCC
CCGCACACTCAACCTTCCACTCGCACCACTACAGAAGAAGAGGCCGAATA
TAATCCATTCGCCAACGAAATCGGCCCTGCTATGCCCCCCGCCAACCATC
CCACCTTCAAAGAAGCCAAGGCCGTAGCCGCCAAGCCCCTCCTCTACGAC
CCCCCCTCACTTGGCCCCGTCGAACCCTCCACACAATACCAACAACAACC
ACAACAAGCCTTTGCCCCCCCGACCTCTATCTCCGCCGCCCCTACCAAAG
TCGTGCTTGTCCACGACGAACAAGCATCACCGTCCTCCACCTTCCCTCTC
TCCGCTCCTGCCCCCTACCAATCGTACATGGCTCCCTGCCCCGCCGCAAC
AGCAACAGCAGCAGCAGCTCCTCCTCCCCAGGTTTCAGGCGCGGGCGTCG
GGACACTTTTTACGGTCGGTGCTGGTGTAAAGCCAGCAGTGGGAGGAGGA
GGAGTAGCAACGGGACAGCAGCCGGCGTTTGGAGCGGCAAGGGCGGCTTC
GCAGGCGGTGGGAGGTGGGAAACCTAAGAAGTTTATTAGAGTGGGGCCTG
GGGAGACGTGGGAGGATCCTACTTTGATCGAGTGGCCGGAGAGTAAGTAC
AAGGGAGGGAGGAGGAAGGAGGAAGTGCGGGAGGAAGGGTGAGTAGAGCG
TACAATCCCTGACTTCTTTTCTACCTGCTCACACTATCTATTTCTATTTA
TGTTGTTTACACAGATGACTTTCGGTTGTTTTGCGGAGACTTGGGACCAG
AGATCAACGATGAGGTACATTCATTTCAACCGTTTTGATATTTTTTTTAT
CGCTTGTCTCCCTGTTGCTTCAATACTTTTTCGCGTCTCACGAGCTCCAT
CTCTCCCTCCCTCTCTCCCTTCCTAGTTACTTGCCAAGGCCTTCGAGGGC
AAGTACCCCTCATTCGCCAAAGCCAAGGTGCTACGGGAAAAGCAGACTGG
CAAGAGCCGTGGGTATGGTTTCGTGTCTTTCCTCGACCCGTTCGAGGGGC
TCAAGGCCCTGAGGGAGATGAATGGGAGGTACATAGGGAGTCGACCCGTG
AAGCTGAAGAAGTGTGATTGGAAGAACAGGGACCTGAAAGAGGTGCGGAA
GAAGGAGAAGGCCAAGAAGAAGTTCTTGGGGAAGTTGGGTTTGGGATGAG
GGAAAGTCGGGGTGGGGGGTAGGGGGGAGAAAGGGATTGAAAGGCGGGGG
GGGGGCTTATGTAGGAGGGAGAGAAAGAGGGAAGGGGGAAGATTTTGAGG
AGAGGATGACTATCGCAAATACACAAGAAAGACGAAAGTAAGCAAATTAA
ACAGTTG
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Coding sequence (CDS) from alignment at chr21:539201..540807-

>NO21G01830.4 ID=NO21G01830.4|Name=NO21G01830.4|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr21:539201..540807- (Nannochloropsis oceanica)
ATGGTGGACGATGACCTTTTTGGGTTTTTCAACGAGCTGAAGGAAGTGAA
GCCTCCTGCAGAGGAGGAGGCAGCGGGAGGGGGAGGGGGAAGCAATGACG
AGGGAGTGCAGCACATCGGCCCTGCCACCCCACCAGGGGCTACAGGAAAG
CGCGCACGAGAAGAAGAGGCCGAATATAATCCATTCGCCAACGAAATCGG
CCCTGCTATGCCCCCCGCCAACCATCCCACCTTCAAAGAAGCCAAGGCCG
TAGCCGCCAAGCCCCTCCTCTACGACCCCCCCTCACTTGGCCCCGTCGAA
CCCTCCACACAATACCAACAACAACCACAACAAGCCTTTGCCCCCCCGAC
CTCTATCTCCGCCGCCCCTACCAAAGTCGTGCTTGTCCACGACGAACAAG
CATCACCGTCCTCCACCTTCCCTCTCTCCGCTCCTGCCCCCTACCAATCG
TACATGGCTCCCTGCCCCGCCGCAACAGCAACAGCAGCAGCAGCTCCTCC
TCCCCAGGTTTCAGGCGCGGGCGTCGGGACACTTTTTACGGTCGGTGCTG
GTGTAAAGCCAGCAGTGGGAGGAGGAGGAGTAGCAACGGGACAGCAGCCG
GCGTTTGGAGCGGCAAGGGCGGCTTCGCAGGCGGTGGGAGGTGGGAAACC
TAAGAAGTTTATTAGAGTGGGGCCTGGGGAGACGTGGGAGGATCCTACTT
TGATCGAGTGGCCGGAGAGTAAGTACAAGGGAGGGAGGAGGAAGGAGGAA
GTGCGGGAGGAAGGGTGA
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Synonyms
Publications