NO21G01830, NO21G01830 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G01830 vs. NCBI_GenBank
Match: EWM22685.1 (rna-binding protein 42 [Nannochloropsis gaditana]) HSP 1 Score: 314.3 bits (804), Expect = 4.700e-82 Identity = 205/362 (56.63%), Postives = 232/362 (64.09%), Query Frame = 0 Query: 1 MVDDDLFGFFNELKEVK--XXXXXXXXXXXXXXXXXGVQHIGPATPPGATGKRAREEEAEYNPFANEIGPAMPPANHPTFKEAKAVAAKPLLY----------DPPSLGPVEP--STQYQQQPQQAFAPPTSISAAPTKVVLVHDEQASPSSTFPLSAPAPYQSYMXXXXXXXXXXXXXXXXXXXXXXXXTLFTVGAGVKPAVG--GGGVATGQQPAFGAARAASQAVGGGKPKKFIRVGPGETWEDPTLIEWPENDFRLFCGDLGPEINDELLAKAFEGKYPSFAKAKVLREKQTGKSRGYGFVSFLDPFEGLKALREMNGRYIGSRPVKLKKCDWKNRDLKEVRKKEKAKKKFLGKLGLG 347 M DDDLFGFFNELKEVK +H+G +T A+GKR R+EE E +++IGP MPP++HP FK+AKA AAKPLLY P + P+ S+ Q+ AFAP S+SAAPT+ + XXXXXXXXXXXXXXXXXX TLFTVGAG KPA G G GKPKKFIRVGPG+TWEDPTL EWPENDFR+FCGDLGPE+ DE L AF GKYPSFAKAKVLR++ TGKSRGYGFVSFLDP EGLKALREMNG+Y+GSRPVKL+KCDWK RDLKEVRKKEK+KKKFL KLGLG Sbjct: 1 MADDDLFGFFNELKEVKAPEEEAGPNAGEGEAPEHQDGRHLG-STTLNASGKRGRDEEPE--NVSHDIGPTMPPSHHPAFKKAKAAAAKPLLYGTAGDGDGSHTPTASAPLASPYSSSGTQEKPSAFAPAISVSAAPTR-----------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGVGTLFTVGAGAKPAAGTWGAXXXXXXXXXXXXXXXXXXQTEAGKPKKFIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKLGLG 348
BLAST of NO21G01830 vs. NCBI_GenBank
Match: AAX26456.2 (SJCHGC03253 protein, partial [Schistosoma japonicum]) HSP 1 Score: 176.4 bits (446), Expect = 1.500e-40 Identity = 80/123 (65.04%), Postives = 100/123 (81.30%), Query Frame = 0 Query: 216 KPKKFIRVGPGETWEDPTLIEWPENDFRLFCGDLGPEINDELLAKAFEGKYPSFAKAKVLREKQTGKSRGYGFVSFLDPFEGLKALREMNGRYIGSRPVKLKKCDWKNRDLKEVRKKEKAKKK 339 K KK+IR G TWEDPTL+EW NDFRLFCGDLG E+ D+ LA+AF +YPSF KAKV+R+K+T KSRGYGFVSF DP + +A+REMNG+Y+G+RP+KLKK +W+NR L+ RKKEK K+K Sbjct: 32 KKKKYIRTAAGATWEDPTLVEWDPNDFRLFCGDLGNEVTDDTLARAF-NRYPSFQKAKVVRDKRTSKSRGYGFVSFSDPGDFTRAMREMNGKYVGNRPIKLKKSEWRNRQLEVQRKKEKEKRK 153
BLAST of NO21G01830 vs. NCBI_GenBank
Match: XP_012797088.1 (RNA-binding protein 42 [Schistosoma haematobium] >KGB37326.1 RNA-binding protein 42 [Schistosoma haematobium]) HSP 1 Score: 176.0 bits (445), Expect = 2.000e-40 Identity = 80/123 (65.04%), Postives = 100/123 (81.30%), Query Frame = 0 Query: 216 KPKKFIRVGPGETWEDPTLIEWPENDFRLFCGDLGPEINDELLAKAFEGKYPSFAKAKVLREKQTGKSRGYGFVSFLDPFEGLKALREMNGRYIGSRPVKLKKCDWKNRDLKEVRKKEKAKKK 339 K KK+IR G TWEDPTL+EW NDFRLFCGDLG E+ D+ LA+AF +YPSF KAKV+R+K+T KSRGYGFVSF DP + +A+REMNG+Y+G+RP+KLKK +W+NR L+ RKKEK K+K Sbjct: 162 KKKKYIRTAAGATWEDPTLVEWDPNDFRLFCGDLGNEVTDDTLARAF-NRYPSFQKAKVVRDKRTSKSRGYGFVSFSDPGDFTRAMREMNGKYVGNRPIKLKKSEWRNRQLEVHRKKEKEKRK 283
BLAST of NO21G01830 vs. NCBI_GenBank
Match: GAA31943.2 (RNA-binding protein 42 [Clonorchis sinensis]) HSP 1 Score: 175.6 bits (444), Expect = 2.600e-40 Identity = 80/124 (64.52%), Postives = 100/124 (80.65%), Query Frame = 0 Query: 215 GKPKKFIRVGPGETWEDPTLIEWPENDFRLFCGDLGPEINDELLAKAFEGKYPSFAKAKVLREKQTGKSRGYGFVSFLDPFEGLKALREMNGRYIGSRPVKLKKCDWKNRDLKEVRKKEKAKKK 339 GK K+FIRV G TWEDPTL EW NDFR+FCGDLG E++D+ L +AF +Y SF KAKV+R+K+TGKSRGYGFVSF DP + +A+REMNG+Y+G+RP+KLK+ DW+ R L+ RKKEK KKK Sbjct: 331 GKKKRFIRVAAGMTWEDPTLAEWDPNDFRIFCGDLGNEVSDDTLTRAF-NRYASFQKAKVVRDKRTGKSRGYGFVSFSDPADFTRAMREMNGKYVGNRPIKLKRSDWRTRQLETYRKKEKEKKK 453
BLAST of NO21G01830 vs. NCBI_GenBank
Match: XP_009177255.1 (hypothetical protein T265_12062 [Opisthorchis viverrini] >KER18997.1 hypothetical protein T265_12062 [Opisthorchis viverrini]) HSP 1 Score: 175.6 bits (444), Expect = 2.600e-40 Identity = 80/124 (64.52%), Postives = 100/124 (80.65%), Query Frame = 0 Query: 215 GKPKKFIRVGPGETWEDPTLIEWPENDFRLFCGDLGPEINDELLAKAFEGKYPSFAKAKVLREKQTGKSRGYGFVSFLDPFEGLKALREMNGRYIGSRPVKLKKCDWKNRDLKEVRKKEKAKKK 339 GK K+FIRV G TWEDPTL EW NDFR+FCGDLG E++D+ L +AF +Y SF KAKV+R+K+TGKSRGYGFVSF DP + +A+REMNG+Y+G+RP+KLK+ DW+ R L+ RKKEK KKK Sbjct: 312 GKKKRFIRVAAGMTWEDPTLAEWDPNDFRIFCGDLGNEVSDDTLTRAF-NRYASFQKAKVVRDKRTGKSRGYGFVSFSDPADFTRAMREMNGKYVGNRPIKLKRSDWRTRQLETYRKKEKEKKK 434
BLAST of NO21G01830 vs. NCBI_GenBank
Match: OON19328.1 (hypothetical protein X801_04805 [Opisthorchis viverrini]) HSP 1 Score: 175.6 bits (444), Expect = 2.600e-40 Identity = 80/124 (64.52%), Postives = 100/124 (80.65%), Query Frame = 0 Query: 215 GKPKKFIRVGPGETWEDPTLIEWPENDFRLFCGDLGPEINDELLAKAFEGKYPSFAKAKVLREKQTGKSRGYGFVSFLDPFEGLKALREMNGRYIGSRPVKLKKCDWKNRDLKEVRKKEKAKKK 339 GK K+FIRV G TWEDPTL EW NDFR+FCGDLG E++D+ L +AF +Y SF KAKV+R+K+TGKSRGYGFVSF DP + +A+REMNG+Y+G+RP+KLK+ DW+ R L+ RKKEK KKK Sbjct: 285 GKKKRFIRVAAGMTWEDPTLAEWDPNDFRIFCGDLGNEVSDDTLTRAF-NRYASFQKAKVVRDKRTGKSRGYGFVSFSDPADFTRAMREMNGKYVGNRPIKLKRSDWRTRQLETYRKKEKEKKK 407
BLAST of NO21G01830 vs. NCBI_GenBank
Match: XP_005816445.1 (RNA-binding protein 42 isoform X1 [Xiphophorus maculatus]) HSP 1 Score: 174.9 bits (442), Expect = 4.400e-40 Identity = 77/123 (62.60%), Postives = 105/123 (85.37%), Query Frame = 0 Query: 216 KPKKFIRVGPGETWEDPTLIEWPENDFRLFCGDLGPEINDELLAKAFEGKYPSFAKAKVLREKQTGKSRGYGFVSFLDPFEGLKALREMNGRYIGSRPVKLKKCDWKNRDLKEVRKKEKAKKK 339 K KK IR+ G TWEDP+L+EW +DFR+FCGDLG E+ND++LA+AF +YPSF KAKV+R+K+TGK++GYGFVSF DP + ++A+REMNG+Y+GSRP+KL+K WK+R+++ VRKK+K KKK Sbjct: 276 KVKKCIRIAAGSTWEDPSLLEWESDDFRIFCGDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKLRKSMWKDRNIEVVRKKQKEKKK 397
BLAST of NO21G01830 vs. NCBI_GenBank
Match: XP_007579068.1 (PREDICTED: RNA-binding protein 42 isoform X1 [Poecilia formosa] >XP_016520143.1 PREDICTED: RNA-binding protein 42 isoform X1 [Poecilia formosa]) HSP 1 Score: 174.9 bits (442), Expect = 4.400e-40 Identity = 77/123 (62.60%), Postives = 105/123 (85.37%), Query Frame = 0 Query: 216 KPKKFIRVGPGETWEDPTLIEWPENDFRLFCGDLGPEINDELLAKAFEGKYPSFAKAKVLREKQTGKSRGYGFVSFLDPFEGLKALREMNGRYIGSRPVKLKKCDWKNRDLKEVRKKEKAKKK 339 K KK IR+ G TWEDP+L+EW +DFR+FCGDLG E+ND++LA+AF +YPSF KAKV+R+K+TGK++GYGFVSF DP + ++A+REMNG+Y+GSRP+KL+K WK+R+++ VRKK+K KKK Sbjct: 273 KVKKCIRIAAGSTWEDPSLLEWESDDFRIFCGDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKLRKSMWKDRNIEVVRKKQKEKKK 394
BLAST of NO21G01830 vs. NCBI_GenBank
Match: XP_007579069.1 (PREDICTED: RNA-binding protein 42 isoform X2 [Poecilia formosa]) HSP 1 Score: 174.9 bits (442), Expect = 4.400e-40 Identity = 77/123 (62.60%), Postives = 105/123 (85.37%), Query Frame = 0 Query: 216 KPKKFIRVGPGETWEDPTLIEWPENDFRLFCGDLGPEINDELLAKAFEGKYPSFAKAKVLREKQTGKSRGYGFVSFLDPFEGLKALREMNGRYIGSRPVKLKKCDWKNRDLKEVRKKEKAKKK 339 K KK IR+ G TWEDP+L+EW +DFR+FCGDLG E+ND++LA+AF +YPSF KAKV+R+K+TGK++GYGFVSF DP + ++A+REMNG+Y+GSRP+KL+K WK+R+++ VRKK+K KKK Sbjct: 271 KVKKCIRIAAGSTWEDPSLLEWESDDFRIFCGDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKLRKSMWKDRNIEVVRKKQKEKKK 392
BLAST of NO21G01830 vs. NCBI_GenBank
Match: XP_008431061.1 (PREDICTED: RNA-binding protein 42 isoform X1 [Poecilia reticulata] >XP_008431062.1 PREDICTED: RNA-binding protein 42 isoform X1 [Poecilia reticulata] >XP_008431063.1 PREDICTED: RNA-binding protein 42 isoform X1 [Poecilia reticulata] >XP_017165211.1 PREDICTED: RNA-binding protein 42 isoform X1 [Poecilia reticulata]) HSP 1 Score: 174.9 bits (442), Expect = 4.400e-40 Identity = 77/123 (62.60%), Postives = 105/123 (85.37%), Query Frame = 0 Query: 216 KPKKFIRVGPGETWEDPTLIEWPENDFRLFCGDLGPEINDELLAKAFEGKYPSFAKAKVLREKQTGKSRGYGFVSFLDPFEGLKALREMNGRYIGSRPVKLKKCDWKNRDLKEVRKKEKAKKK 339 K KK IR+ G TWEDP+L+EW +DFR+FCGDLG E+ND++LA+AF +YPSF KAKV+R+K+TGK++GYGFVSF DP + ++A+REMNG+Y+GSRP+KL+K WK+R+++ VRKK+K KKK Sbjct: 273 KVKKCIRIAAGSTWEDPSLLEWESDDFRIFCGDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKLRKSMWKDRNIEVVRKKQKEKKK 394 The following BLAST results are available for this feature:
BLAST of NO21G01830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
The following polypeptide feature(s) derives from this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G01830 ID=NO21G01830|Name=NO21G01830|organism=Nannochloropsis oceanica|type=gene|length=1607bpback to top protein sequence of NO21G01830.4 >NO21G01830.4-protein ID=NO21G01830.4-protein|Name=NO21G01830.4|organism=Nannochloropsis oceanica|type=polypeptide|length=256bpback to top protein sequence of NO21G01830.3 >NO21G01830.3-protein ID=NO21G01830.3-protein|Name=NO21G01830.3|organism=Nannochloropsis oceanica|type=polypeptide|length=264bpback to top protein sequence of NO21G01830.2 >NO21G01830.2-protein ID=NO21G01830.2-protein|Name=NO21G01830.2|organism=Nannochloropsis oceanica|type=polypeptide|length=256bpback to top protein sequence of NO21G01830.1 >NO21G01830.1-protein ID=NO21G01830.1-protein|Name=NO21G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bpback to top Synonyms
Publications
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