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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr21 | genome | chr21:426930..428932 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01420.1 vs.
Match: EWM22678.1 (RNA binding protein [Nannochloropsis gaditana]) HSP 1 Score: 236.5 bits (602), Expect = 1.500e-58 Identity = 123/180 (68.33%), Postives = 143/180 (79.44%), Query Frame = 0
Query: 233 QGGRGLGKDGQGITRAIQSRAIGGGKGVINGPPPGARGIQPISMRQEQHQQHQQHQQHQHQQRQQQQKKKKRGLFSNPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413
Q G GLG+D QGIT AI++RA+GGGKGVI+GP G +G Q + QQ+Q Q KKKKRGLFSNPTK+VLLKNMVGPG+VDDDLQ ETAEEC+KHG V +CL+FE+ D +YPEEERVRTFVAF+RQESAVK YVAMNGR+FGGRQVQASFFDE++FARKDLAP + E
Sbjct: 7 QEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVD----------------RQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAPGKEE 170
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G01420.1 ID=NO21G01420.1|Name=NO21G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp
ATGAACGACCTCTTTGGGGACCTTCCAGCCGCGGCCGGTGACGATGGCAC
GGCAACTCCTGGGAAGATGACCAAGAACGCGGCCATCCTCCTTCGCCCAA
GGGCCACCAGCAGCAACCTCATGCCGCCTCCCAAGCGTCCCGTTGCAGCA
CGCCCGCCGTCCTACATGGCGCCACCCCATGTACGGTCACGGGCTGTCGT
TACCCAGGCGCCCATCGAGATCCATGCACAAAACAAGCACGTAGTCACTG
CCAACGCAGCAGCGACCCTTCCTCATGAATGCGGGTCTTCCGATTTTGAA
GAGTTGTCTTGCGAAGGCGAAGCGTACGACCCCTCCAGGCCTAATGACTA
CATGGAGTATTGCAAGGAACGCAACGAGAAGAAGAAACAGGAGGAGCGGG
ACCGGGAGTACGAAAAGTACAAAAAGGAGCGCGGCGAGGACACGCAACGC
GGTCAGGCCCTTCTTCCTGGCGCGGGGGCCTCAAGTGTGGGAAATCAATT
GCAAACCATAGCACCGCCTTCTCGGGGACGTGGGCGTGGAAACATCAGCA
ATTTGCCCTCCTGGATGGTCAAGATGTCATCAAGCGCGGGTGCGGAAAGT
GGTGGTGCGGCAGCCATGCCGTCTCTTGGGTCGCCAGAAGGCCGCTTTGA
GGATGCGCAGGGGTTCGGAGTTGGCGGCGGCGGGATGGCTAGGGTACAAG
GAGGGAGGGGGCTGGGCAAGGACGGGCAGGGCATCACTCGGGCTATTCAA
TCTCGCGCTATCGGGGGCGGGAAAGGCGTGATTAACGGGCCACCACCGGG
AGCAAGAGGAATTCAGCCAATATCCATGCGCCAGGAGCAGCACCAGCAGC
ATCAGCAGCACCAGCAGCACCAGCACCAGCAGCGACAACAACAGCAAAAG
AAGAAGAAGCGCGGCCTGTTCAGCAACCCGACCAAGGTGGTGCTGCTCAA
GAACATGGTGGGTCCGGGGCAGGTAGACGACGACTTACAAGCCGAGACGG
CAGAGGAGTGCAGCAAACACGGAACTGTAATTCAGTGCCTAATATTTGAG
ATTGTCGACGAAGCGTATCCAGAGGAGGAGCGGGTGCGGACATTTGTGGC
ATTTGACCGGCAGGAGAGCGCGGTGAAAACGTATGTGGCTATGAATGGCC
GCTACTTTGGGGGCCGGCAGGTGCAGGCTTCATTTTTTGATGAGGATCGG
TTTGCACGCAAAGATCTGGCACCAAGAGAAGGCGAGTAG back to topprotein sequence of NO21G01420.1 >NO21G01420.1-protein ID=NO21G01420.1-protein|Name=NO21G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MNDLFGDLPAAAGDDGTATPGKMTKNAAILLRPRATSSNLMPPPKRPVAA
RPPSYMAPPHVRSRAVVTQAPIEIHAQNKHVVTANAAATLPHECGSSDFE
ELSCEGEAYDPSRPNDYMEYCKERNEKKKQEERDREYEKYKKERGEDTQR
GQALLPGAGASSVGNQLQTIAPPSRGRGRGNISNLPSWMVKMSSSAGAES
GGAAAMPSLGSPEGRFEDAQGFGVGGGGMARVQGGRGLGKDGQGITRAIQ
SRAIGGGKGVINGPPPGARGIQPISMRQEQHQQHQQHQQHQHQQRQQQQK
KKKRGLFSNPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFE
IVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDR
FARKDLAPREGE* back to topmRNA from alignment at chr21:426930..428932+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G01420.1 ID=NO21G01420.1|Name=NO21G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp|location=Sequence derived from alignment at chr21:426930..428932+ (Nannochloropsis oceanica)
ATGAACGACCTCTTTGGGGACCTTCCAGCCGCGGCCGGTGACGATGGCAC
GGCAACTCCTGGGAAGATGACCAAGAACGCGGCCATCCTCCTTCGCCCAA
GGGCCACCAGCAGCAACCTCATGCCGCCTCCCAAGCGTCCCGTTGCAGCA
CGCCCGCCGTCCTACATGGCGCCACCCCATGTACGGTCACGGGCTGTCGT
TACCCAGGCGCCCATCGAGGTAAGTGTATGAAAGTGAGATCTGGACCTCC
CAGTTTCGTTCTCTGTACGTTGCAGCGCTCAAAGCGCTCACATAATTCTT
TTCACACGCCATTTACATGACAGATCCATGCACAAAACAAGCACGTAGTC
ACTGCCAACGCAGCAGCGACCCTTCCTCATGAATGCGGGTCTTCCGATTT
TGAAGAGTTGTCTTGCGAAGGCGAAGCGTACGACCCCTCCAGGCCTAATG
ACTACATGGAGTATTGCAAGGTAAAAAAGAAGGGAGGGAATTGTAATTGC
TTCGAAGGGTACTCGTCTTCTCCCCTTATTTCAGAGAAAGCGTGAAATGT
CTCTCCCTTCTCCTAATTCCTTTTGTAGGAACGCAACGAGAAGAAGAAAC
AGGAGGAGCGGGACCGGGAGTACGAAAAGTACAAAAAGGAGCGCGGCGAG
GACACGCAACGCGGTCAGGCCCTTCTTCCTGGCGCGGGGGCCTCAAGTGT
GGGAAATCAATTGCAAACCATAGCACCGCCTTCTCGGGGACGTGGGCGTG
GAAACATCAGCAATTTGCCCTCCTGGATGGTCAAGGTGAAAAAGGAGGAG
AAGACGCTAGACTTATTTCCTAGCAGCTTTAGTGGATGGGCAGCAGGAAG
ATGCCTGAATTAAAGTGCTGTCTAACTTCTTTTTCTCAAATTGTTTTCTA
CTTTCTTCACGTATTCTAGATGTCATCAAGCGCGGGTGCGGAAAGTGGTG
GTGCGGCAGCCATGCCGTCTCTTGGGTCGCCAGAAGGCCGCTTTGAGGAT
GCGCAGGTGAGTCTAAGCGTCTCTTCTGGGAATAGGGTGATCTCCTTTTG
GTCTGTATGCCTCCGAAGTCTTGCTCTACTTTTATCGAAAAAGCTCTTGG
TTCGAACCAAACGATTTTCTTTCTATGGCCCTTGTCACGCTCTTCGGGTC
AGGGGTTCGGAGTTGGCGGCGGCGGGATGGGTACGGGGGACGGGGGCGGA
AAGGGAGGCATAGGCGCCGCCTTGCTGAAGAAGCTAGGGTACAAGGAGGG
AGGGGGCTGGGCAAGGACGGGCAGGGCATCACTCGGGCTATTCAATCTCG
CGCTATCGGGGGCGGGAAAGGCGTGATTAACGGGCCACCACCGGGAGCAA
GAGGGTAAGTTCGAGGACTGCGGCGGTTTTCTCTTGGCACACTATCCCTC
CTACTCACTCATATATTCTCATCTTTAAATTTCACAGAATTCAGCCAATA
TCCATGCGCCAGGAGCAGCACCAGCAGCATCAGCAGCACCAGCAGCACCA
GCACCAGCAGCGACAACAACAGCAAAAGAAGAAGAAGCGCGGCCTGTTCA
GCAACCCGACCAAGGTGGTGCTGCTCAAGAACATGGTGGGTCCGGGGCAG
GTAGACGACGACTTACAAGCCGAGACGGCAGAGGAGTGCAGCAAACACGG
AACTGTAATTCAGTGCCTAATATTTGAGGTACGTTGCTGGTTAAGGCGGT
GGATAGATGAAAGCAGTTGCAAACTTGCGATCGAATTTCTGATTACGCCT
GAAAATAGCGCTAGGTTTTTTCCTTTCCTTCTAACTCTCATGCCAAATAT
CTTTTTCCTGCCAGATTGTCGACGAAGCGTATCCAGAGGAGGAGCGGGTG
CGGACATTTGTGGCATTTGACCGGCAGGAGAGCGCGGTGAAAACGTATGT
GGCTATGAATGGCCGCTACTTTGGGGGCCGGCAGGTGCAGGCTTCATTTT
TTGATGAGGATCGGTTTGCACGCAAAGATCTGGCACCAAGAGAAGGCGAG
TAG back to topCoding sequence (CDS) from alignment at chr21:426930..428932+ >NO21G01420.1 ID=NO21G01420.1|Name=NO21G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr21:426930..428932+ (Nannochloropsis oceanica)
ATGAACGACCTCTTTGGGGACCTTCCAGCCGCGGCCGGTGACGATGGCAC
GGCAACTCCTGGGAAGATGACCAAGAACGCGGCCATCCTCCTTCGCCCAA
GGGCCACCAGCAGCAACCTCATGCCGCCTCCCAAGCGTCCCGTTGCAGCA
CGCCCGCCGTCCTACATGGCGCCACCCCATGTACGGTCACGGGCTGTCGT
TACCCAGGCGCCCATCGAGATCCATGCACAAAACAAGCACGTAGTCACTG
CCAACGCAGCAGCGACCCTTCCTCATGAATGCGGGTCTTCCGATTTTGAA
GAGTTGTCTTGCGAAGGCGAAGCGTACGACCCCTCCAGGCCTAATGACTA
CATGGAGTATTGCAAGGAACGCAACGAGAAGAAGAAACAGGAGGAGCGGG
ACCGGGAGTACGAAAAGTACAAAAAGGAGCGCGGCGAGGACACGCAACGC
GGTCAGGCCCTTCTTCCTGGCGCGGGGGCCTCAAGTGTGGGAAATCAATT
GCAAACCATAGCACCGCCTTCTCGGGGACGTGGGCGTGGAAACATCAGCA
ATTTGCCCTCCTGGATGGTCAAGATGTCATCAAGCGCGGGTGCGGAAAGT
GGTGGTGCGGCAGCCATGCCGTCTCTTGGGTCGCCAGAAGGCCGCTTTGA
GGATGCGCAGGGGTTCGGAGTTGGCGGCGGCGGGATGGCTAGGGTACAAG
GAGGGAGGGGGCTGGGCAAGGACGGGCAGGGCATCACTCGGGCTATTCAA
TCTCGCGCTATCGGGGGCGGGAAAGGCGTGATTAACGGGCCACCACCGGG
AGCAAGAGGAATTCAGCCAATATCCATGCGCCAGGAGCAGCACCAGCAGC
ATCAGCAGCACCAGCAGCACCAGCACCAGCAGCGACAACAACAGCAAAAG
AAGAAGAAGCGCGGCCTGTTCAGCAACCCGACCAAGGTGGTGCTGCTCAA
GAACATGGTGGGTCCGGGGCAGGTAGACGACGACTTACAAGCCGAGACGG
CAGAGGAGTGCAGCAAACACGGAACTGTAATTCAGTGCCTAATATTTGAG
ATTGTCGACGAAGCGTATCCAGAGGAGGAGCGGGTGCGGACATTTGTGGC
ATTTGACCGGCAGGAGAGCGCGGTGAAAACGTATGTGGCTATGAATGGCC
GCTACTTTGGGGGCCGGCAGGTGCAGGCTTCATTTTTTGATGAGGATCGG
TTTGCACGCAAAGATCTGGCACCAAGAGAAGGCGAGTAG back to top
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