NO21G01420, NO21G01420 (gene) Nannochloropsis oceanica

Overview
NameNO21G01420
Unique NameNO21G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2003
Alignment locationchr21:426930..428932 +

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Properties
Property NameValue
DescriptionDNA-damage-repair/toleration protein DRT111, chloroplastic
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:426930..428932 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR003954RRM_dom_euk
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Homology
BLAST of NO21G01420 vs. NCBI_GenBank
Match: EWM22678.1 (RNA binding protein [Nannochloropsis gaditana])

HSP 1 Score: 199.9 bits (507), Expect = 1.500e-47
Identity = 115/160 (71.88%), Postives = 131/160 (81.88%), Query Frame = 0
Query:  253 AIGGGKGVINGPPPGARGIQPISMRXXXXXXXXXXXXXXXXXXXXXXXXXXXGLFSNPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413
            A+GGGKGVI+GP  G +G Q +                XXXXXXXXXXXXXXGLFSNPTK+VLLKNMVGPG+VDDDLQ ETAEEC+KHG V +CL+FE+ D +YPEEERVRTFVAF+RQESAVK YVAMNGR+FGGRQVQASFFDE++FARKDLAP + E
Sbjct:   27 ALGGGKGVISGPAQGGKGAQDV----------------XXXXXXXXXXXXXXGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAPGKEE 170          
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_022238460.1 (splicing factor 45-like, partial [Limulus polyphemus])

HSP 1 Score: 137.1 bits (344), Expect = 1.200e-28
Identity = 64/102 (62.75%), Postives = 80/102 (78.43%), Query Frame = 0
Query:  306 LFSNPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLA 408
            +  NP+KVVLL+NMVGPG+VD+DL+ ET EEC K+G VI+CLIFEI     P+EE VR F+ F R ESA+K  V +NGRYFGGR V+ASF+D+DRF R +LA
Sbjct:  256 MMKNPSKVVLLRNMVGPGEVDEDLEPETKEECGKYGDVIRCLIFEIPGGNVPDEEAVRIFIEFKRMESAIKAVVDLNGRYFGGRVVKASFYDQDRFKRFELA 357          
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_022041429.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Helianthus annuus] >OTG36053.1 putative D111/G-patch domain-containing protein [Helianthus annuus])

HSP 1 Score: 136.7 bits (343), Expect = 1.600e-28
Identity = 64/104 (61.54%), Postives = 81/104 (77.88%), Query Frame = 0
Query:  309 NPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413
            +PTKVVLL+NMVGPG+VDDDL+AE AEECSK+GTV + LIFEI + ++P +E VR FV F+R E A K  V + GR+FGGR V+A+F+DE+RF    LAP  GE
Sbjct:  261 HPTKVVLLRNMVGPGEVDDDLEAEVAEECSKYGTVTRVLIFEITEPSFPVDEAVRIFVQFERSEQATKALVDLEGRFFGGRVVRATFYDEERFNTNQLAPMPGE 364          
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_023210342.1 (splicing factor 45-like isoform X1 [Centruroides sculpturatus])

HSP 1 Score: 135.2 bits (339), Expect = 4.600e-28
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 0
Query:  306 LFSNPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDL 407
            +  NP+KVVLL+NMVGPG+VDD+L+ ET EEC K+G V++CLIFEI     PEEE VR F+ F R ESA+K  V +NGRYFGGR V+A F+D+DRF R +L
Sbjct:  231 IMKNPSKVVLLRNMVGPGEVDDELEPETKEECGKYGEVVKCLIFEIAASDIPEEEAVRIFIEFKRLESAIKAVVDLNGRYFGGRIVRAGFYDQDRFKRLEL 331          
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_023210343.1 (splicing factor 45-like isoform X2 [Centruroides sculpturatus])

HSP 1 Score: 135.2 bits (339), Expect = 4.600e-28
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 0
Query:  306 LFSNPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDL 407
            +  NP+KVVLL+NMVGPG+VDD+L+ ET EEC K+G V++CLIFEI     PEEE VR F+ F R ESA+K  V +NGRYFGGR V+A F+D+DRF R +L
Sbjct:  343 IMKNPSKVVLLRNMVGPGEVDDELEPETKEECGKYGEVVKCLIFEIAASDIPEEEAVRIFIEFKRLESAIKAVVDLNGRYFGGRIVRAGFYDQDRFKRLEL 443          
BLAST of NO21G01420 vs. NCBI_GenBank
Match: EPS64709.1 (hypothetical protein M569_10070 [Genlisea aurea])

HSP 1 Score: 134.8 bits (338), Expect = 6.100e-28
Identity = 61/103 (59.22%), Postives = 79/103 (76.70%), Query Frame = 0
Query:  310 PTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413
            PT+VVLL+NMVGPG+VDDDL+ E AEECSK GTV + LIFEI +  +P++E VR FV F++ E A K  + + GR+FGGR V+A+F+DEDRF   +LAP  GE
Sbjct:  272 PTRVVLLRNMVGPGEVDDDLEGEVAEECSKFGTVTRVLIFEITESNFPQDEAVRIFVQFEKAEQATKALIELEGRFFGGRVVRATFYDEDRFGNNELAPLPGE 374          
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_011085210.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Sesamum indicum])

HSP 1 Score: 134.0 bits (336), Expect = 1.000e-27
Identity = 60/103 (58.25%), Postives = 79/103 (76.70%), Query Frame = 0
Query:  310 PTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413
            PT+VVLL+NMVGPG+VDDDL+ E AEEC+K GTV + LIFEI +  +P++E VR F+ F+R E A K  + + GR+FGGR V ASF+DE+RF+  +LAP  GE
Sbjct:  274 PTRVVLLRNMVGPGEVDDDLEGEVAEECTKFGTVTRVLIFEITEPNFPQDEAVRIFIQFERAEQATKALIELEGRFFGGRVVHASFYDEERFSNNELAPMPGE 376          
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_019227613.1 (PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Nicotiana attenuata] >OIT06161.1 dna-damage-repairtoleration protein drt111, chloroplastic [Nicotiana attenuata])

HSP 1 Score: 134.0 bits (336), Expect = 1.000e-27
Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 0
Query:  310 PTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413
            PT+VVLLKNMVGPG+VDDDL+ E AEEC+K GTV + LIFEI +  +P EE VR FV F+R E A K  + + GR+FGGR V+A F+DE+RF+  +LAP  GE
Sbjct:  281 PTRVVLLKNMVGPGEVDDDLEGEVAEECTKFGTVTRVLIFEITEANFPHEEAVRIFVQFERAEQATKALIELEGRFFGGRIVRACFYDEERFSNNELAPMPGE 383          
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_009799261.1 (PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Nicotiana sylvestris] >XP_016494774.1 PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Nicotiana tabacum])

HSP 1 Score: 133.7 bits (335), Expect = 1.400e-27
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 0
Query:  310 PTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413
            PT+VVLLKNMVGPG+VDDDL+ E AEEC+K GTV + LIFEI +  +P EE VR FV F+R E A K  + + GR+FGGR V A F+DE+RF+  +LAP  GE
Sbjct:  282 PTRVVLLKNMVGPGEVDDDLEGEVAEECTKFGTVTRVLIFEITEANFPHEEAVRIFVQFERAEQATKALIELEGRFFGGRIVHACFYDEERFSNNELAPMPGE 384          
BLAST of NO21G01420 vs. NCBI_GenBank
Match: PIN07330.1 (mRNA splicing factor [Handroanthus impetiginosus])

HSP 1 Score: 133.7 bits (335), Expect = 1.400e-27
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 0
Query:  310 PTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413
            PT+VVLL+NMVGPG+VDDDL+ E AEEC+K GTV + LIFEI +  +P +E VR FV F+R E A K  + + GR+FGGR V ASF+DEDRF   +LAP  GE
Sbjct:  275 PTRVVLLRNMVGPGEVDDDLEGEVAEECAKFGTVTRVLIFEITEANFPHDEAVRIFVQFERAEQATKALIELEGRFFGGRVVHASFYDEDRFNNNELAPLPGE 377          
The following BLAST results are available for this feature:
BLAST of NO21G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22678.11.500e-4771.88RNA binding protein [Nannochloropsis gaditana][more]
XP_022238460.11.200e-2862.75splicing factor 45-like, partial [Limulus polyphem... [more]
XP_022041429.11.600e-2861.54DNA-damage-repair/toleration protein DRT111, chlor... [more]
XP_023210342.14.600e-2861.39splicing factor 45-like isoform X1 [Centruroides s... [more]
XP_023210343.14.600e-2861.39splicing factor 45-like isoform X2 [Centruroides s... [more]
EPS64709.16.100e-2859.22hypothetical protein M569_10070 [Genlisea aurea][more]
XP_011085210.11.000e-2758.25DNA-damage-repair/toleration protein DRT111, chlor... [more]
XP_019227613.11.000e-2760.19PREDICTED: DNA-damage-repair/toleration protein DR... [more]
XP_009799261.11.400e-2760.19PREDICTED: DNA-damage-repair/toleration protein DR... [more]
PIN07330.11.400e-2760.19mRNA splicing factor [Handroanthus impetiginosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL025nonsL025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR060ngnoR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004618NSK004618Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01420.1NO21G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546271gene_8101Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g19gene7776Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01420.1NO21G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01420 ID=NO21G01420|Name=NO21G01420|organism=Nannochloropsis oceanica|type=gene|length=2003bp
ATGAACGACCTCTTTGGGGACCTTCCAGCCGCGGCCGGTGACGATGGCAC
GGCAACTCCTGGGAAGATGACCAAGAACGCGGCCATCCTCCTTCGCCCAA
GGGCCACCAGCAGCAACCTCATGCCGCCTCCCAAGCGTCCCGTTGCAGCA
CGCCCGCCGTCCTACATGGCGCCACCCCATGTACGGTCACGGGCTGTCGT
TACCCAGGCGCCCATCGAGgtaagtgtatgaaagtgagatctggacctcc
cagtttcgttctctgtacgttgcagcgctcaaagcgctcacataattctt
ttcacacgccatttacatgacagATCCATGCACAAAACAAGCACGTAGTC
ACTGCCAACGCAGCAGCGACCCTTCCTCATGAATGCGGGTCTTCCGATTT
TGAAGAGTTGTCTTGCGAAGGCGAAGCGTACGACCCCTCCAGGCCTAATG
ACTACATGGAGTATTGCAAGgtaaaaaagaagggagggaattgtaattgc
ttcgaagggtactcgtcttctccccttatttcagagaaagcgtgaaatgt
ctctcccttctcctaattccttttgtagGAACGCAACGAGAAGAAGAAAC
AGGAGGAGCGGGACCGGGAGTACGAAAAGTACAAAAAGGAGCGCGGCGAG
GACACGCAACGCGGTCAGGCCCTTCTTCCTGGCGCGGGGGCCTCAAGTGT
GGGAAATCAATTGCAAACCATAGCACCGCCTTCTCGGGGACGTGGGCGTG
GAAACATCAGCAATTTGCCCTCCTGGATGGTCAAGgtgaaaaaggaggag
aagacgctagacttatttcctagcagctttagtggatgggcagcaggaag
atgcctgaattaaagtgctgtctaacttctttttctcaaattgttttcta
ctttcttcacgtattctagATGTCATCAAGCGCGGGTGCGGAAAGTGGTG
GTGCGGCAGCCATGCCGTCTCTTGGGTCGCCAGAAGGCCGCTTTGAGGAT
GCGCAGgtgagtctaagcgtctcttctgggaatagggtgatctccttttg
gtctgtatgcctccgaagtcttgctctacttttatcgaaaaagctcttgg
ttcgaaccaaacgattttctttctatggcccttgtcacgctcttcgggtc
agGGGTTCGGAGTTGGCGGCGGCGGGATGGgtacgggggacgggggcgga
aagggaggcataggcgccgccttgctgaagaagCTAGGGTACAAGGAGGG
AGGGGGCTGGGCAAGGACGGGCAGGGCATCACTCGGGCTATTCAATCTCG
CGCTATCGGGGGCGGGAAAGGCGTGATTAACGGGCCACCACCGGGAGCAA
GAGGgtaagttcgaggactgcggcggttttctcttggcacactatccctc
ctactcactcatatattctcatctttaaatttcacagAATTCAGCCAATA
TCCATGCGCCAGGAGCAGCACCAGCAGCATCAGCAGCACCAGCAGCACCA
GCACCAGCAGCGACAACAACAGCAAAAGAAGAAGAAGCGCGGCCTGTTCA
GCAACCCGACCAAGGTGGTGCTGCTCAAGAACATGGTGGGTCCGGGGCAG
GTAGACGACGACTTACAAGCCGAGACGGCAGAGGAGTGCAGCAAACACGG
AACTGTAATTCAGTGCCTAATATTTGAGgtacgttgctggttaaggcggt
ggatagatgaaagcagttgcaaacttgcgatcgaatttctgattacgcct
gaaaatagcgctaggttttttcctttccttctaactctcatgccaaatat
ctttttcctgccagATTGTCGACGAAGCGTATCCAGAGGAGGAGCGGGTG
CGGACATTTGTGGCATTTGACCGGCAGGAGAGCGCGGTGAAAACGTATGT
GGCTATGAATGGCCGCTACTTTGGGGGCCGGCAGGTGCAGGCTTCATTTT
TTGATGAGGATCGGTTTGCACGCAAAGATCTGGCACCAAGAGAAGGCGAG
TAG
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protein sequence of NO21G01420.1

>NO21G01420.1-protein ID=NO21G01420.1-protein|Name=NO21G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MNDLFGDLPAAAGDDGTATPGKMTKNAAILLRPRATSSNLMPPPKRPVAA
RPPSYMAPPHVRSRAVVTQAPIEIHAQNKHVVTANAAATLPHECGSSDFE
ELSCEGEAYDPSRPNDYMEYCKERNEKKKQEERDREYEKYKKERGEDTQR
GQALLPGAGASSVGNQLQTIAPPSRGRGRGNISNLPSWMVKMSSSAGAES
GGAAAMPSLGSPEGRFEDAQGFGVGGGGMARVQGGRGLGKDGQGITRAIQ
SRAIGGGKGVINGPPPGARGIQPISMRQEQHQQHQQHQQHQHQQRQQQQK
KKKRGLFSNPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFE
IVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDR
FARKDLAPREGE*
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Synonyms
Publications