NO21G01420, NO21G01420 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G01420 vs. NCBI_GenBank
Match: EWM22678.1 (RNA binding protein [Nannochloropsis gaditana]) HSP 1 Score: 199.9 bits (507), Expect = 1.500e-47 Identity = 115/160 (71.88%), Postives = 131/160 (81.88%), Query Frame = 0 Query: 253 AIGGGKGVINGPPPGARGIQPISMRXXXXXXXXXXXXXXXXXXXXXXXXXXXGLFSNPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413 A+GGGKGVI+GP G +G Q + XXXXXXXXXXXXXXGLFSNPTK+VLLKNMVGPG+VDDDLQ ETAEEC+KHG V +CL+FE+ D +YPEEERVRTFVAF+RQESAVK YVAMNGR+FGGRQVQASFFDE++FARKDLAP + E Sbjct: 27 ALGGGKGVISGPAQGGKGAQDV----------------XXXXXXXXXXXXXXGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAPGKEE 170
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_022238460.1 (splicing factor 45-like, partial [Limulus polyphemus]) HSP 1 Score: 137.1 bits (344), Expect = 1.200e-28 Identity = 64/102 (62.75%), Postives = 80/102 (78.43%), Query Frame = 0 Query: 306 LFSNPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLA 408 + NP+KVVLL+NMVGPG+VD+DL+ ET EEC K+G VI+CLIFEI P+EE VR F+ F R ESA+K V +NGRYFGGR V+ASF+D+DRF R +LA Sbjct: 256 MMKNPSKVVLLRNMVGPGEVDEDLEPETKEECGKYGDVIRCLIFEIPGGNVPDEEAVRIFIEFKRMESAIKAVVDLNGRYFGGRVVKASFYDQDRFKRFELA 357
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_022041429.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Helianthus annuus] >OTG36053.1 putative D111/G-patch domain-containing protein [Helianthus annuus]) HSP 1 Score: 136.7 bits (343), Expect = 1.600e-28 Identity = 64/104 (61.54%), Postives = 81/104 (77.88%), Query Frame = 0 Query: 309 NPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413 +PTKVVLL+NMVGPG+VDDDL+AE AEECSK+GTV + LIFEI + ++P +E VR FV F+R E A K V + GR+FGGR V+A+F+DE+RF LAP GE Sbjct: 261 HPTKVVLLRNMVGPGEVDDDLEAEVAEECSKYGTVTRVLIFEITEPSFPVDEAVRIFVQFERSEQATKALVDLEGRFFGGRVVRATFYDEERFNTNQLAPMPGE 364
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_023210342.1 (splicing factor 45-like isoform X1 [Centruroides sculpturatus]) HSP 1 Score: 135.2 bits (339), Expect = 4.600e-28 Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 0 Query: 306 LFSNPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDL 407 + NP+KVVLL+NMVGPG+VDD+L+ ET EEC K+G V++CLIFEI PEEE VR F+ F R ESA+K V +NGRYFGGR V+A F+D+DRF R +L Sbjct: 231 IMKNPSKVVLLRNMVGPGEVDDELEPETKEECGKYGEVVKCLIFEIAASDIPEEEAVRIFIEFKRLESAIKAVVDLNGRYFGGRIVRAGFYDQDRFKRLEL 331
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_023210343.1 (splicing factor 45-like isoform X2 [Centruroides sculpturatus]) HSP 1 Score: 135.2 bits (339), Expect = 4.600e-28 Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 0 Query: 306 LFSNPTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDL 407 + NP+KVVLL+NMVGPG+VDD+L+ ET EEC K+G V++CLIFEI PEEE VR F+ F R ESA+K V +NGRYFGGR V+A F+D+DRF R +L Sbjct: 343 IMKNPSKVVLLRNMVGPGEVDDELEPETKEECGKYGEVVKCLIFEIAASDIPEEEAVRIFIEFKRLESAIKAVVDLNGRYFGGRIVRAGFYDQDRFKRLEL 443
BLAST of NO21G01420 vs. NCBI_GenBank
Match: EPS64709.1 (hypothetical protein M569_10070 [Genlisea aurea]) HSP 1 Score: 134.8 bits (338), Expect = 6.100e-28 Identity = 61/103 (59.22%), Postives = 79/103 (76.70%), Query Frame = 0 Query: 310 PTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413 PT+VVLL+NMVGPG+VDDDL+ E AEECSK GTV + LIFEI + +P++E VR FV F++ E A K + + GR+FGGR V+A+F+DEDRF +LAP GE Sbjct: 272 PTRVVLLRNMVGPGEVDDDLEGEVAEECSKFGTVTRVLIFEITESNFPQDEAVRIFVQFEKAEQATKALIELEGRFFGGRVVRATFYDEDRFGNNELAPLPGE 374
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_011085210.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Sesamum indicum]) HSP 1 Score: 134.0 bits (336), Expect = 1.000e-27 Identity = 60/103 (58.25%), Postives = 79/103 (76.70%), Query Frame = 0 Query: 310 PTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413 PT+VVLL+NMVGPG+VDDDL+ E AEEC+K GTV + LIFEI + +P++E VR F+ F+R E A K + + GR+FGGR V ASF+DE+RF+ +LAP GE Sbjct: 274 PTRVVLLRNMVGPGEVDDDLEGEVAEECTKFGTVTRVLIFEITEPNFPQDEAVRIFIQFERAEQATKALIELEGRFFGGRVVHASFYDEERFSNNELAPMPGE 376
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_019227613.1 (PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Nicotiana attenuata] >OIT06161.1 dna-damage-repairtoleration protein drt111, chloroplastic [Nicotiana attenuata]) HSP 1 Score: 134.0 bits (336), Expect = 1.000e-27 Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 0 Query: 310 PTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413 PT+VVLLKNMVGPG+VDDDL+ E AEEC+K GTV + LIFEI + +P EE VR FV F+R E A K + + GR+FGGR V+A F+DE+RF+ +LAP GE Sbjct: 281 PTRVVLLKNMVGPGEVDDDLEGEVAEECTKFGTVTRVLIFEITEANFPHEEAVRIFVQFERAEQATKALIELEGRFFGGRIVRACFYDEERFSNNELAPMPGE 383
BLAST of NO21G01420 vs. NCBI_GenBank
Match: XP_009799261.1 (PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Nicotiana sylvestris] >XP_016494774.1 PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Nicotiana tabacum]) HSP 1 Score: 133.7 bits (335), Expect = 1.400e-27 Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 0 Query: 310 PTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413 PT+VVLLKNMVGPG+VDDDL+ E AEEC+K GTV + LIFEI + +P EE VR FV F+R E A K + + GR+FGGR V A F+DE+RF+ +LAP GE Sbjct: 282 PTRVVLLKNMVGPGEVDDDLEGEVAEECTKFGTVTRVLIFEITEANFPHEEAVRIFVQFERAEQATKALIELEGRFFGGRIVHACFYDEERFSNNELAPMPGE 384
BLAST of NO21G01420 vs. NCBI_GenBank
Match: PIN07330.1 (mRNA splicing factor [Handroanthus impetiginosus]) HSP 1 Score: 133.7 bits (335), Expect = 1.400e-27 Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 0 Query: 310 PTKVVLLKNMVGPGQVDDDLQAETAEECSKHGTVIQCLIFEIVDEAYPEEERVRTFVAFDRQESAVKTYVAMNGRYFGGRQVQASFFDEDRFARKDLAPREGE 413 PT+VVLL+NMVGPG+VDDDL+ E AEEC+K GTV + LIFEI + +P +E VR FV F+R E A K + + GR+FGGR V ASF+DEDRF +LAP GE Sbjct: 275 PTRVVLLRNMVGPGEVDDDLEGEVAEECAKFGTVTRVLIFEITEANFPHDEAVRIFVQFERAEQATKALIELEGRFFGGRVVHASFYDEDRFNNNELAPLPGE 377 The following BLAST results are available for this feature:
BLAST of NO21G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G01420 ID=NO21G01420|Name=NO21G01420|organism=Nannochloropsis oceanica|type=gene|length=2003bpback to top protein sequence of NO21G01420.1 >NO21G01420.1-protein ID=NO21G01420.1-protein|Name=NO21G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bpback to top Synonyms
Publications
|