NO21G01000.1, NO21G01000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01000.1
Unique NameNO21G01000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1595
Alignment locationchr21:320154..321748 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:320154..321748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01000.1 vs.
Match: EWM22596.1 (dna rna helicase [Nannochloropsis gaditana])

HSP 1 Score: 228.0 bits (580), Expect = 3.800e-56
Identity = 156/301 (51.83%), Postives = 180/301 (59.80%), Query Frame = 0 
Query:   14 AVPSAGDDVTAPSTLISVTSTNHAPPTSTPPRRLP-----LLPPTSPLNPSSSTADAFAQSTPCKTPRTSD---DDDGGGFSTPVAPTTGALHSTGSALHHNHHRRHSHCLQHSPSPSPS-QSIKPDAYEGRDHDQDCPICMSPLASRSIYKTRCSHRFHKSCLVESRAAHINGCPFCRGEITPGLTPFEACLGRVLSEREQIISRARAARQAVLARMQQR-GEGREGGG---RSLAFSVLREEEVPYRGR-RGLEERFETEAMVGEGEEGRVGGEGGRRVVMALTTEDLGHRIDHEGDLP 301
            A  S  D      T ++      AP   T  R +      LLPP + +    STA     STP K P T      ++GGGFSTP APT G  HSTGS+L  +HHRR +   Q       S +S      EG D D DCPICMSPLA RS+YKTRCSH FHKSCLVESRAAH  GCP+CRG ITPGLTPF+AC GRV ++R+QI++RARAARQAVLAR+QQR GE R  GG   R    SVLRE +    G   GL E FE  A +        G    RRVVMA +TEDLGHRIDH+ DLP
Sbjct:   15 AATSDADVSHDKKTDVAFVLRTEAPAAGTADRSVSPTPDALLPPMTSMPSRISTA---LLSTPVKLPHTQSCGTGEEGGGFSTPDAPTAGVRHSTGSSLLLHHHRRRNLTPQDGTDHDDSLESHAQHQTEGHDPDFDCPICMSPLALRSVYKTRCSHHFHKSCLVESRAAHNIGCPYCRGHITPGLTPFDACAGRVGNDRDQIVNRARAARQAVLARIQQRQGERRGRGGVSDRRWTLSVLREGDGSDVGALGGLNEAFERVAAIS-------GEREPRRVVMAGSTEDLGHRIDHDDDLP 305
The following BLAST results are available for this feature:
BLAST of NO21G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22596.13.800e-5651.83dna rna helicase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01000NO21G01000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01000.1NO21G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01000.1.cds1NO21G01000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01000.1 ID=NO21G01000.1|Name=NO21G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp
GCAGGTCAGACCAGGCCTCTTGCTACTCCGGGGCCCGGGCATCGCTTTTT
TTCTTTGGCGACGACTAAACACAAGCAAGCACCCGGCATCATTTCCCACT
GCAAACGACGCCATCACGCCTTCAAAATTCAAACAAACATACGAAACCAC
CCTGCACAAGCACCAGCAAAGCATGGAGACATCAATCCTTCCGTCGCAGA
CATCGGTACCAGCGGTACCATCAGCAGGAGACGACGTCACTGCCCCCTCC
ACGCTCATCAGCGTCACCTCTACAAACCATGCTCCGCCCACCTCCACCCC
TCCCCGTCGGCTTCCCCTCCTCCCCCCGACCAGCCCCCTCAACCCATCCA
GCAGCACTGCCGATGCCTTTGCCCAATCTACGCCATGCAAAACACCTCGC
ACATCTGACGATGACGATGGAGGAGGATTCAGCACCCCCGTCGCTCCTAC
AACCGGCGCGCTGCACAGCACAGGCTCCGCTCTTCACCACAATCACCACC
GCCGCCACTCCCACTGCTTGCAACACTCCCCTTCTCCTTCTCCTTCCCAA
TCCATCAAACCTGATGCCTACGAAGGACGTGATCATGACCAAGATTGTCC
CATATGCATGAGTCCCCTTGCCTCCAGGTCCATATACAAAACGCGTTGCT
CCCACAGGTTCCACAAATCGTGTCTGGTCGAGTCAAGGGCCGCACACATA
AATGGATGTCCTTTCTGTAGGGGAGAAATCACCCCGGGGCTGACGCCGTT
CGAAGCATGCCTGGGAAGGGTGTTAAGTGAGAGGGAACAGATCATCTCGA
GGGCAAGAGCAGCGAGGCAGGCTGTGCTGGCACGGATGCAGCAACGAGGG
GAAGGGAGGGAAGGTGGAGGGAGGAGCTTGGCCTTTTCTGTGTTGAGGGA
GGAGGAGGTCCCGTATAGGGGAAGGAGGGGATTAGAGGAGCGGTTTGAGA
CAGAGGCGATGGTAGGGGAAGGGGAGGAAGGGAGGGTGGGAGGGGAGGGA
GGGAGGAGGGTGGTGATGGCCTTGACGACGGAGGATTTGGGCCATCGGAT
TGACCATGAAGGGGATTTGCCTTTCTAGAGAGAGAGGATAGGAGGGAAAA
GGAGTCGTGTATAAAGTGGATGGAGGGAGAAAAGAACAGAGTCAGGAAGG
AGGGAGGAAAGAAGTGGGGGAAGGAGGGAGATGAGGATGATATGGCTGTA
CAGGACATATCTGAGTAGGAAGGCGGGGAAGGGATCAAGGAGGCATCTGA
GTAGGCAGAAGGGAGAGGAAGAATGGAGGCAGGGCGGACTGTGTAAATAG
TAGGGAAAAGGGGGAAGGGAGAAAAGGAGTCAGAGCAGAGTGTAATATAG
GGAGAGGAGGATGAGGTTGGTCCATGGGCTAGGGTAGGATTCAATGTGTG
TGTGAGAGAGGGAGAGAAAGGGAGAGGAGGAGAAAGGGGGAGGAAAAGAG
GAAAGAAGACACGAATACTTTCTACTTTTTTTCATTATGCGTTTTTGGAG
TTTACGAATGGAAGAGGAACAGGAATGAATGAATATAGCGCAGGAGAAGA
AGCGACATGAAGGTCGGAAAAAGAAGGATCTAGGCATGAAGGGTA
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protein sequence of NO21G01000.1

>NO21G01000.1-protein ID=NO21G01000.1-protein|Name=NO21G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
METSILPSQTSVPAVPSAGDDVTAPSTLISVTSTNHAPPTSTPPRRLPLL
PPTSPLNPSSSTADAFAQSTPCKTPRTSDDDDGGGFSTPVAPTTGALHST
GSALHHNHHRRHSHCLQHSPSPSPSQSIKPDAYEGRDHDQDCPICMSPLA
SRSIYKTRCSHRFHKSCLVESRAAHINGCPFCRGEITPGLTPFEACLGRV
LSEREQIISRARAARQAVLARMQQRGEGREGGGRSLAFSVLREEEVPYRG
RRGLEERFETEAMVGEGEEGRVGGEGGRRVVMALTTEDLGHRIDHEGDLP
F*
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mRNA from alignment at chr21:320154..321748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01000.1 ID=NO21G01000.1|Name=NO21G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp|location=Sequence derived from alignment at chr21:320154..321748- (Nannochloropsis oceanica)
GCAGGTCAGACCAGGCCTCTTGCTACTCCGGGGCCCGGGCATCGCTTTTT
TTCTTTGGCGACGACTAAACACAAGCAAGCACCCGGCATCATTTCCCACT
GCAAACGACGCCATCACGCCTTCAAAATTCAAACAAACATACGAAACCAC
CCTGCACAAGCACCAGCAAAGCATGGAGACATCAATCCTTCCGTCGCAGA
CATCGGTACCAGCGGTACCATCAGCAGGAGACGACGTCACTGCCCCCTCC
ACGCTCATCAGCGTCACCTCTACAAACCATGCTCCGCCCACCTCCACCCC
TCCCCGTCGGCTTCCCCTCCTCCCCCCGACCAGCCCCCTCAACCCATCCA
GCAGCACTGCCGATGCCTTTGCCCAATCTACGCCATGCAAAACACCTCGC
ACATCTGACGATGACGATGGAGGAGGATTCAGCACCCCCGTCGCTCCTAC
AACCGGCGCGCTGCACAGCACAGGCTCCGCTCTTCACCACAATCACCACC
GCCGCCACTCCCACTGCTTGCAACACTCCCCTTCTCCTTCTCCTTCCCAA
TCCATCAAACCTGATGCCTACGAAGGACGTGATCATGACCAAGATTGTCC
CATATGCATGAGTCCCCTTGCCTCCAGGTCCATATACAAAACGCGTTGCT
CCCACAGGTTCCACAAATCGTGTCTGGTCGAGTCAAGGGCCGCACACATA
AATGGATGTCCTTTCTGTAGGGGAGAAATCACCCCGGGGCTGACGCCGTT
CGAAGCATGCCTGGGAAGGGTGTTAAGTGAGAGGGAACAGATCATCTCGA
GGGCAAGAGCAGCGAGGCAGGCTGTGCTGGCACGGATGCAGCAACGAGGG
GAAGGGAGGGAAGGTGGAGGGAGGAGCTTGGCCTTTTCTGTGTTGAGGGA
GGAGGAGGTCCCGTATAGGGGAAGGAGGGGATTAGAGGAGCGGTTTGAGA
CAGAGGCGATGGTAGGGGAAGGGGAGGAAGGGAGGGTGGGAGGGGAGGGA
GGGAGGAGGGTGGTGATGGCCTTGACGACGGAGGATTTGGGCCATCGGAT
TGACCATGAAGGGGATTTGCCTTTCTAGAGAGAGAGGATAGGAGGGAAAA
GGAGTCGTGTATAAAGTGGATGGAGGGAGAAAAGAACAGAGTCAGGAAGG
AGGGAGGAAAGAAGTGGGGGAAGGAGGGAGATGAGGATGATATGGCTGTA
CAGGACATATCTGAGTAGGAAGGCGGGGAAGGGATCAAGGAGGCATCTGA
GTAGGCAGAAGGGAGAGGAAGAATGGAGGCAGGGCGGACTGTGTAAATAG
TAGGGAAAAGGGGGAAGGGAGAAAAGGAGTCAGAGCAGAGTGTAATATAG
GGAGAGGAGGATGAGGTTGGTCCATGGGCTAGGGTAGGATTCAATGTGTG
TGTGAGAGAGGGAGAGAAAGGGAGAGGAGGAGAAAGGGGGAGGAAAAGAG
GAAAGAAGACACGAATACTTTCTACTTTTTTTCATTATGCGTTTTTGGAG
TTTACGAATGGAAGAGGAACAGGAATGAATGAATATAGCGCAGGAGAAGA
AGCGACATGAAGGTCGGAAAAAGAAGGATCTAGGCATGAAGGGTA
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Coding sequence (CDS) from alignment at chr21:320154..321748-

>NO21G01000.1 ID=NO21G01000.1|Name=NO21G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr21:320154..321748- (Nannochloropsis oceanica)
ATGGAGACATCAATCCTTCCGTCGCAGACATCGGTACCAGCGGTACCATC
AGCAGGAGACGACGTCACTGCCCCCTCCACGCTCATCAGCGTCACCTCTA
CAAACCATGCTCCGCCCACCTCCACCCCTCCCCGTCGGCTTCCCCTCCTC
CCCCCGACCAGCCCCCTCAACCCATCCAGCAGCACTGCCGATGCCTTTGC
CCAATCTACGCCATGCAAAACACCTCGCACATCTGACGATGACGATGGAG
GAGGATTCAGCACCCCCGTCGCTCCTACAACCGGCGCGCTGCACAGCACA
GGCTCCGCTCTTCACCACAATCACCACCGCCGCCACTCCCACTGCTTGCA
ACACTCCCCTTCTCCTTCTCCTTCCCAATCCATCAAACCTGATGCCTACG
AAGGACGTGATCATGACCAAGATTGTCCCATATGCATGAGTCCCCTTGCC
TCCAGGTCCATATACAAAACGCGTTGCTCCCACAGGTTCCACAAATCGTG
TCTGGTCGAGTCAAGGGCCGCACACATAAATGGATGTCCTTTCTGTAGGG
GAGAAATCACCCCGGGGCTGACGCCGTTCGAAGCATGCCTGGGAAGGGTG
TTAAGTGAGAGGGAACAGATCATCTCGAGGGCAAGAGCAGCGAGGCAGGC
TGTGCTGGCACGGATGCAGCAACGAGGGGAAGGGAGGGAAGGTGGAGGGA
GGAGCTTGGCCTTTTCTGTGTTGAGGGAGGAGGAGGTCCCGTATAGGGGA
AGGAGGGGATTAGAGGAGCGGTTTGAGACAGAGGCGATGGTAGGGGAAGG
GGAGGAAGGGAGGGTGGGAGGGGAGGGAGGGAGGAGGGTGGTGATGGCCT
TGACGACGGAGGATTTGGGCCATCGGATTGACCATGAAGGGGATTTGCCT
TTCTAG
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Synonyms
Publications