NO21G01000, NO21G01000 (gene) Nannochloropsis oceanica

Overview
NameNO21G01000
Unique NameNO21G01000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1595
Alignment locationchr21:320154..321748 -

Link to JBrowse

Properties
Property NameValue
DescriptionDna rna helicase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:320154..321748 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
Homology
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BLAST of NO21G01000 vs. NCBI_GenBank
Match: EWM22596.1 (dna rna helicase [Nannochloropsis gaditana])

HSP 1 Score: 200.7 bits (509), Expect = 6.600e-48
Identity = 155/301 (51.50%), Postives = 175/301 (58.14%), Query Frame = 0 
Query:   14 AVPSAGDDVTAPSTLISVTSTNHAPPTSTPPRRL-----PLLPPTSPLNPSSSTADAFAQSTPCKTPRT---SXXXXXXXXXXPVAPTTGALHSTGSXXXXXXXXXXXHCLQH-SPXXXXXQSIKPDAYEGRDHDQDCPICMSPLASRSIYKTRCSHRFHKSCLVESRAAHINGCPFCRGEITPGLTPFEACLGRVLSEREQIISRARAARQAVLARMQQR-GEGREGGG---RSLAFSVLREEEVPYRGR-RGLEERFETEAMVGEGEEGRVGGEGGRRVVMALTTEDLGHRIDHEGDLP 301
            A  S  D      T ++      AP   T  R +      LLPP + +    STA     STP K P T              P APT G  HSTGSXXXXXXXXXXX   Q  +      +S      EG D D DCPICMSPLA RS+YKTRCSH FHKSCLVESRAAH  GCP+CRG ITPGLTPF+AC GRV ++R+QI++RARAARQAVLAR+QQR GE R  GG   R    SVLRE +    G   GL E FE  A +        G    RRVVMA +TEDLGHRIDH+ DLP
Sbjct:   15 AATSDADVSHDKKTDVAFVLRTEAPAAGTADRSVSPTPDALLPPMTSMPSRISTA---LLSTPVKLPHTQSCGTGEEGGGFSTPDAPTAGVRHSTGSXXXXXXXXXXXLTPQDGTDHDDSLESHAQHQTEGHDPDFDCPICMSPLALRSVYKTRCSHHFHKSCLVESRAAHNIGCPYCRGHITPGLTPFDACAGRVGNDRDQIVNRARAARQAVLARIQQRQGERRGRGGVSDRRWTLSVLREGDGSDVGALGGLNEAFERVAAIS-------GEREPRRVVMAGSTEDLGHRIDHDDDLP 305
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BLAST of NO21G01000 vs. NCBI_GenBank
Match: CBN79993.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.8 bits (164), Expect = 6.700e-8
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 0 
Query:  142 CPICMSPL-----ASRSIYKTR-CSHRFHKSCLVESRAAHINGCPFCRGEITPGLTPFEACLGR---VLS-----EREQIISRARAARQAVLARMQQRGE 228
            C IC+SPL     A + +Y  R C H FH++CLVE+R A   GCP+CRG++  GLTP      R   VL+     +RE I + A  AR A+   ++ R E
Sbjct:  105 CAICLSPLKKPSGAKKEVYTVRLCQHMFHRACLVENRRAGNTGCPYCRGDLERGLTPEATAAEREAKVLAAQQQDQREAIRNAAGRARMALARSLRLREE 204
The following BLAST results are available for this feature:
BLAST of NO21G01000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22596.16.600e-4851.50dna rna helicase [Nannochloropsis gaditana][more]
CBN79993.16.700e-841.00conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004684NSK004684Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01000.1NO21G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|200746gene_8055Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100126g9gene7839Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01000.1NO21G01000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01000 ID=NO21G01000|Name=NO21G01000|organism=Nannochloropsis oceanica|type=gene|length=1595bp
GCAGGTCAGACCAGGCCTCTTGCTACTCCGGGGCCCGGGCATCGCTTTTT
TTCTTTGGCGACGACTAAACACAAGCAAGCACCCGGCATCATTTCCCACT
GCAAACGACGCCATCACGCCTTCAAAATTCAAACAAACATACGAAACCAC
CCTGCACAAGCACCAGCAAAGCATGGAGACATCAATCCTTCCGTCGCAGA
CATCGGTACCAGCGGTACCATCAGCAGGAGACGACGTCACTGCCCCCTCC
ACGCTCATCAGCGTCACCTCTACAAACCATGCTCCGCCCACCTCCACCCC
TCCCCGTCGGCTTCCCCTCCTCCCCCCGACCAGCCCCCTCAACCCATCCA
GCAGCACTGCCGATGCCTTTGCCCAATCTACGCCATGCAAAACACCTCGC
ACATCTGACGATGACGATGGAGGAGGATTCAGCACCCCCGTCGCTCCTAC
AACCGGCGCGCTGCACAGCACAGGCTCCGCTCTTCACCACAATCACCACC
GCCGCCACTCCCACTGCTTGCAACACTCCCCTTCTCCTTCTCCTTCCCAA
TCCATCAAACCTGATGCCTACGAAGGACGTGATCATGACCAAGATTGTCC
CATATGCATGAGTCCCCTTGCCTCCAGGTCCATATACAAAACGCGTTGCT
CCCACAGGTTCCACAAATCGTGTCTGGTCGAGTCAAGGGCCGCACACATA
AATGGATGTCCTTTCTGTAGGGGAGAAATCACCCCGGGGCTGACGCCGTT
CGAAGCATGCCTGGGAAGGGTGTTAAGTGAGAGGGAACAGATCATCTCGA
GGGCAAGAGCAGCGAGGCAGGCTGTGCTGGCACGGATGCAGCAACGAGGG
GAAGGGAGGGAAGGTGGAGGGAGGAGCTTGGCCTTTTCTGTGTTGAGGGA
GGAGGAGGTCCCGTATAGGGGAAGGAGGGGATTAGAGGAGCGGTTTGAGA
CAGAGGCGATGGTAGGGGAAGGGGAGGAAGGGAGGGTGGGAGGGGAGGGA
GGGAGGAGGGTGGTGATGGCCTTGACGACGGAGGATTTGGGCCATCGGAT
TGACCATGAAGGGGATTTGCCTTTCTAGAGAGAGAGGATAGGAGGGAAAA
GGAGTCGTGTATAAAGTGGATGGAGGGAGAAAAGAACAGAGTCAGGAAGG
AGGGAGGAAAGAAGTGGGGGAAGGAGGGAGATGAGGATGATATGGCTGTA
CAGGACATATCTGAGTAGGAAGGCGGGGAAGGGATCAAGGAGGCATCTGA
GTAGGCAGAAGGGAGAGGAAGAATGGAGGCAGGGCGGACTGTGTAAATAG
TAGGGAAAAGGGGGAAGGGAGAAAAGGAGTCAGAGCAGAGTGTAATATAG
GGAGAGGAGGATGAGGTTGGTCCATGGGCTAGGGTAGGATTCAATGTGTG
TGTGAGAGAGGGAGAGAAAGGGAGAGGAGGAGAAAGGGGGAGGAAAAGAG
GAAAGAAGACACGAATACTTTCTACTTTTTTTCATTATGCGTTTTTGGAG
TTTACGAATGGAAGAGGAACAGGAATGAATGAATATAGCGCAGGAGAAGA
AGCGACATGAAGGTCGGAAAAAGAAGGATCTAGGCATGAAGGGTA
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protein sequence of NO21G01000.1

>NO21G01000.1-protein ID=NO21G01000.1-protein|Name=NO21G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
METSILPSQTSVPAVPSAGDDVTAPSTLISVTSTNHAPPTSTPPRRLPLL
PPTSPLNPSSSTADAFAQSTPCKTPRTSDDDDGGGFSTPVAPTTGALHST
GSALHHNHHRRHSHCLQHSPSPSPSQSIKPDAYEGRDHDQDCPICMSPLA
SRSIYKTRCSHRFHKSCLVESRAAHINGCPFCRGEITPGLTPFEACLGRV
LSEREQIISRARAARQAVLARMQQRGEGREGGGRSLAFSVLREEEVPYRG
RRGLEERFETEAMVGEGEEGRVGGEGGRRVVMALTTEDLGHRIDHEGDLP
F*
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Synonyms
Publications