NO21G00690, NO21G00690 (gene) Nannochloropsis oceanica

Overview
NameNO21G00690
Unique NameNO21G00690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length861
Alignment locationchr21:233190..234050 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:233190..234050 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G00690 vs. NCBI_GenBank
Match: EWM22570.1 (hypothetical protein Naga_100993g2 [Nannochloropsis gaditana])

HSP 1 Score: 145.6 bits (366), Expect = 2.100e-31
Identity = 83/188 (44.15%), Postives = 110/188 (58.51%), Query Frame = 0 
Query:   61 HGMLRVPRPATTQPPKPKEPPTLEEAVAAVLPPAQAEKWLGVLQEDAAVLQSYRPRPPSFAYQSFQPSSGVSSLTGGSKP----KRGSXXXXXXXXXXXXXXXXXXXPGTILSELILRACSKAGVSNTEGLRTELKTNDEMRAKLEGLFVKQMKKDLVPYVEGDERFERERFPGTARTILGLMEEEGE 245
            HGML +PRP T+ P + K PPTLE+A++AVLP  +AEKW  ++Q D   L+  R  PPSFAY+SF    G       ++P    + G                    PG +L+ L++RAC+KAGV++TEGLR  LK+  E   +LE LF+KQ+ +DL P V  DE F+  RFP TAR ILG  E  GE
Sbjct:   83 HGMLPLPRPLTSPPKRVKAPPTLEDALSAVLPAPEAEKWRAIIQADVPRLEGMRTHPPSFAYRSFLARGG-GDYPRPARPAKGDREGEEEGEAHVPWKESEGKGGQDPGAVLTGLMMRACTKAGVADTEGLRQGLKSYPEATKRLEALFLKQLARDLKPVVAEDENFDPTRFPATARNILGRAESGGE 269
The following BLAST results are available for this feature:
BLAST of NO21G00690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22570.12.100e-3144.15hypothetical protein Naga_100993g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004723NSK004723Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00690.1NO21G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606076gene_9465Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100993g2gene7870Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00690.1NO21G00690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00690 ID=NO21G00690|Name=NO21G00690|organism=Nannochloropsis oceanica|type=gene|length=861bp
AACAGGCACGGAATAAACCGCACAGGCGCCATGGACGACGATGATTTAGA
CGCAATGCTCGATGACGCGGCGGACGACGTTTTAGCCTCTGCTCCGCCCT
CCTCTGCCTCCACCAGAGCAGCTGCCCCGTCCCCGACCGCTGATATTCTC
GACGATGCCGCCGCGGCCATCTTTCAACAACATCAGCCTCCGACACAAAC
AGGAAAGTCGCACGGCATGCTCCGTGTTCCCCGCCCCGCGACCACTCAGC
CCCCGAAACCCAAGGAACCACCCACGCTGGAAGAAGCTGTGGCAGCTGTA
CTCCCTCCTGCCCAGGCAGAAAAATGGCTTGGCGTGCTCCAGGAGGATGC
CGCCGTCCTACAAAGCTACCGCCCCCGTCCTCCTAGCTTTGCCTATCAAT
CATTTCAGCCTTCCAGTGGTGTCAGCAGTTTGACTGGCGGGAGCAAACCG
AAGCGAGGAAGCGATGCGACTCCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGAAGAACAAGGGGGTCCTGGCACGATTTTATCCGAGCTCATCCTCC
GTGCATGCTCTAAAGCAGGCGTGAGCAACACGGAGGGACTCCGGACGGAG
TTGAAGACGAACGATGAGATGAGGGCGAAGTTGGAGGGGTTGTTCGTAAA
GCAGATGAAGAAGGATCTAGTGCCTTATGTGGAGGGGGACGAGAGATTTG
AGAGGGAGAGGTTCCCGGGGACGGCGAGGACGATTTTGGGATTGATGGAG
GAAGAAGGGGAGGAGGGGATGTGAGGAGAAGGGATGGGAGAAAGAGCAAT
CGAAAAGAAGACAAAAGTGTGACTGAGAAAAAGATAAGACCAAGCGTTCC
TCCCCCTGCAT
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protein sequence of NO21G00690.1

>NO21G00690.1-protein ID=NO21G00690.1-protein|Name=NO21G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MDDDDLDAMLDDAADDVLASAPPSSASTRAAAPSPTADILDDAAAAIFQQ
HQPPTQTGKSHGMLRVPRPATTQPPKPKEPPTLEEAVAAVLPPAQAEKWL
GVLQEDAAVLQSYRPRPPSFAYQSFQPSSGVSSLTGGSKPKRGSDATPAA
AAAAAAAAEEQGGPGTILSELILRACSKAGVSNTEGLRTELKTNDEMRAK
LEGLFVKQMKKDLVPYVEGDERFERERFPGTARTILGLMEEEGEEGM*
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Synonyms
Publications