NO21G00670.1, NO21G00670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00670.1
Unique NameNO21G00670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1440
Alignment locationchr21:227372..229712 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:227372..229712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00670.1 vs.
Match: CBJ27916.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 345.5 bits (885), Expect = 2.600e-91
Identity = 182/336 (54.17%), Postives = 228/336 (67.86%), Query Frame = 0 
Query:    1 MPTYLGIEGGGTTWKVAIAQDKPDNITESIRFDTTSP-EETFGKIKEWIKDKNYDSVGIATFGPVDPKLTSPTYGHITTTPKPGWKNVDVVGALTDGSKPILFDTDVNAPALAEFTFHASSPTQSSVAYITVGTGVGVGLVINGKTVHGLVHPEGGHVPPFRLPSDGIKGNDLY---KDIEGLSNTIAIASKKGIDRHLLKTIGDDDAVWDSVAHALGSLCATLVLMVSVERIVISGGVLNRTILYPKIRAKTLEILKGYIVHPLLTPALIDQYITPSEWGDNAGIVGALTLAKVALDDK-GKNSVLGKARAYVCKHGAAVF-----LGVVLGAAA 327
            M  Y G+EGGGTTW+VAIA   P NITES  F T    +E    IK+W+  + YD +GI TFGPVDP+  SPTYG+IT+TPKPGW  VDVVG L+DGS P  FDTDVNAPALAEF + A    +SS AYITVGTGVGVGLV+NG+ VHGL+HPE GH+   R+P D   G D       +EGL++T+A+A++K   R  L  + D D VW++ AH+L  LCA+LVL+VS ERIV+SGGV+NRT+LY K+R  T E+L GYI HP +T   +D YITPS +G NAG+VG+LTLA +A ++  G+    G   A     GAA       + V L AAA
Sbjct:    1 MVIYAGVEGGGTTWRVAIADGHPTNITESKSFVTVQDSKEQLKAIKDWLSTRKYDCLGIGTFGPVDPREGSPTYGYITSTPKPGWNMVDVVGYLSDGSVPCKFDTDVNAPALAEFMWGAKKEGESSCAYITVGTGVGVGLVVNGQAVHGLMHPEAGHLCLKRMPGDDFPGVDSVFGGASVEGLASTVALAARKNCAREDLPGVPDSDPVWEATAHSLAGLCASLVLVVSPERIVLSGGVMNRTLLYDKVRKWTRELLNGYIDHPAVTTDAVDDYITPSSFGQNAGMVGSLTLAHIAYEEAGGRGGGAGSPTATKAGGGAACLASPCNVSVALAAAA 336
The following BLAST results are available for this feature:
BLAST of NO21G00670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ27916.12.600e-9154.17conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00670NO21G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00670.1NO21G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00670.1.cds1NO21G00670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00670.1.cds2NO21G00670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00670.1.cds3NO21G00670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00670.1.cds4NO21G00670.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00670.1.cds5NO21G00670.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00670.1.cds6NO21G00670.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00670.1.cds7NO21G00670.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00670.1 ID=NO21G00670.1|Name=NO21G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp
ATGCCGACCTATTTGGGCATCGAAGGCGGGGGCACCACCTGGAAGGTGGC
TATCGCCCAAGACAAGCCGGACAACATCACAGAATCCATTCGCTTTGACA
CGACGAGCCCCGAAGAGACCTTTGGCAAGATCAAGGAATGGATAAAGGAC
AAGAATTACGACTCTGTGGGCATTGCCACCTTCGGACCTGTGGACCCTAA
ACTCACTTCGCCGACATATGGCCACATCACCACCACCCCCAAGCCTGGCT
GGAAGAACGTTGACGTCGTGGGCGCCTTGACGGATGGCAGCAAACCCATT
CTCTTCGACACAGACGTGAACGCCCCCGCCCTGGCCGAGTTCACCTTCCA
TGCCTCCTCCCCTACGCAATCCTCAGTGGCCTACATCACGGTCGGCACGG
GGGTGGGCGTCGGGCTGGTGATCAATGGGAAGACGGTGCATGGCCTCGTG
CACCCAGAGGGCGGGCACGTCCCTCCCTTCCGTCTGCCTTCGGACGGGAT
TAAAGGGAACGACCTGTACAAGGACATCGAGGGTCTCTCCAACACCATCG
CCATTGCCAGTAAGAAGGGCATTGACAGGCACTTGCTCAAGACCATAGGA
GATGATGACGCGGTATGGGACAGCGTGGCCCATGCCTTGGGCTCTCTTTG
CGCGACGTTGGTCCTGATGGTGTCCGTGGAGAGGATCGTCATCTCCGGTG
GCGTCTTGAACCGCACCATCCTCTACCCCAAAATCCGGGCCAAGACCCTC
GAGATTCTGAAAGGGTATATCGTGCACCCGCTCCTCACGCCCGCCCTCAT
CGACCAGTACATCACCCCCTCCGAGTGGGGAGACAACGCCGGCATCGTGG
GGGCCTTGACGCTGGCTAAGGTCGCCCTAGACGACAAGGGGAAAAACTCG
GTGCTGGGGAAGGCACGGGCATATGTGTGCAAACACGGAGCGGCGGTGTT
TCTCGGCGTGGTCTTGGGGGCTGCCGCCACTGCGCCGGGAAATGAAAGGA
ATGTCGGGACGGATGAAAAAGAGGGTGGGATCATTGGCAACAGGTTGATC
AAGAACAGCAGCAGTAGTAGTAGCAGCAGCAGCAGCGGCAGCGGAATACA
GATAGAAAGGAAATGCATCCAGAAGGCGAAGGGAGGGAGGGAAGAAAGAA
AAGGAGGGAAGGACGATGTTGCAGGCAGTTTAAGGAAGATGTGTCGTGGT
GTGAGTGCCATTGTGTGTATGGTTGTGTGTGAGAGAGTGTCGATGCATAA
ATATTGGAATTATGGGGAAAATGGCAGGCAACAGGAAGTGTCGTTGAAAG
AGAGGGTGGGACAAAGATTTGCTCTGCCACCACAAGCCCAATCGCTCCCC
GACGAAAAGAAGAAGATGAAGCCGCAGTGTTTCGCAAGCAACGTGGGACG
AGACGAGGGTCCTTGTTTTCCCCACCATTTAGGATTTTAA
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protein sequence of NO21G00670.1

>NO21G00670.1-protein ID=NO21G00670.1-protein|Name=NO21G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MPTYLGIEGGGTTWKVAIAQDKPDNITESIRFDTTSPEETFGKIKEWIKD
KNYDSVGIATFGPVDPKLTSPTYGHITTTPKPGWKNVDVVGALTDGSKPI
LFDTDVNAPALAEFTFHASSPTQSSVAYITVGTGVGVGLVINGKTVHGLV
HPEGGHVPPFRLPSDGIKGNDLYKDIEGLSNTIAIASKKGIDRHLLKTIG
DDDAVWDSVAHALGSLCATLVLMVSVERIVISGGVLNRTILYPKIRAKTL
EILKGYIVHPLLTPALIDQYITPSEWGDNAGIVGALTLAKVALDDKGKNS
VLGKARAYVCKHGAAVFLGVVLGAAATAPGNERNVGTDEKEGGIIGNRLI
KNSSSSSSSSSSGSGIQIERKCIQKAKGGREERKGGKDDVAGSLRKMCRG
VSAIVCMVVCERVSMHKYWNYGENGRQQEVSLKERVGQRFALPPQAQSLP
DEKKKMKPQCFASNVGRDEGPCFPHHLGF*
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mRNA from alignment at chr21:227372..229712+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00670.1 ID=NO21G00670.1|Name=NO21G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2341bp|location=Sequence derived from alignment at chr21:227372..229712+ (Nannochloropsis oceanica)
ATGCCGACCTATTTGGGCATCGAAGGCGGGGGCACCACCTGGAAGGCAAG
TCGTCGTGTTCAAGTCCCTCCCCCGTATTGTTCTTTATGTCTTAGTCTTC
GTCCCATTCCTTCGTTTGTTCTAAACCCACGACTCAACCACAAACTCAGG
TGGCTATCGCCCAAGACAAGCCGGACAACATCACAGAATCCATTCGCTTT
GACACGACGAGCCCCGAAGAGACCTTTGGCAAGATCAAGGTATGTAGTTC
GGCCTGTCTCCCTTTTTCTTCGCCCTTTGTGCCAAACACGACTATGAGCT
CTTTGTTTCTATGGACTCGCCAAGACAGCGCTACATCAGCCGACCGATGA
TCTTCACGGCTGCCTTCCGTCGTTGTCTTGGCCATGCCTGCCTCCTCTGG
TACTCTTTTCTCATTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTTCAGGAATGGATAAAGGACAAGAATTACGACTCTGTGGGCA
TTGCCACCTTCGGACCTGTGGACCCTAAACTCACTTCGCCGACATATGGC
CACATCACCACCACCCCCAAGCCTGGCTGGAAGAACGTTGACGTCGTGGG
CGCCTTGACGGGTACTTGAACCCTTCCTCGGTCCTTGCTGCCCACCTGCC
TGTCCTTTCCCCCCTTCTCTCCTCCGTCCCCTCTTCTCCTCGAGCCACCG
TAAATAATGTGCACGCTTCGTCCCCCCCTTTCCTTCCTCCTTCCATTCGC
AACAGATGGCAGCAAACCCATTCTCTTCGACACAGACGTGAACGCCCCCG
CCCTGGCCGAGTTCACCTTCCATGCCTCCTCCCCTACGCAATCCTCAGTG
GCCTACATCACGGTCGGCACGGGGGTGGGCGTCGGGCTGGTGATCAATGG
GAAGACGGTGCATGGCCTCGTGCACCCAGAGGGCGGGCACGTCCCTCCCT
TCCGTCTGCCTTCGGACGGGATTAAAGGTTCTTTGCTTCCCTCCCTCCCT
CCCTCCATAATTTCCTCCTTTCCTCTTTGTCTGCCTGCCTTCGTCTGCCT
TTTTCTGCCAACAAGAGGAAAAGAAGTGTGATTGGTCAGTCCCTCCAAAT
CTCGCCTAACCCTCCCTCTCCCTTTCCCTTCCCCCCCTCCCTCCCTCCCT
CCCACAGGGAACGACCTGTACAAGGACATCGAGGGTCTCTCCAACACCAT
CGCCATTGCCAGTAAGAAGGGCATTGACAGGCACTTGCTCAAGACCATAG
GAGATGATGACGCGGTATGGGACAGCGTGGCCCATGCCTTGGGCTCTCTT
TGCGCGACGTTGGTCCTGATGGTGTCCGTGGAGAGGATCGTCATCTCCGG
TGGTGAGGGAAAGGAAGGGGGGAGAGGGGGAGGGAGGGAGGGATGGAAGG
AAGACGGGGGCTGCATCACAACTCATCCTCGTGGGTATTAATCCTATTTG
TTTACATCCTTTTGCTCCCCCCCTCCCTCCCTCCATCCCTCCCTCCCTCC
TTTCCCCCCCTCCTTCAGGCGTCTTGAACCGCACCATCCTCTACCCCAAA
ATCCGGGCCAAGACCCTCGAGATTCTGAAAGGGTATATCGTGCACCCGCT
CCTCACGCCCGCCCTCATCGACCAGTACATCACCCCCTCCGAGTGGGGAG
ACAACGCCGGCATCGTGGGGGCCTTGACGCTGGCTAAGGTCGCCCTAGAC
GACAAGGGGAAAAACTCGGTGCTGGGGAAGGCACGGGCATATGTGTGCAA
ACACGGAGCGGCGGTGTTTCTCGGCGTGGTCTTGGGGGCTGCCGCCACTG
CGGTGGGTGTCTTTGGGAAGCGGAAGTAGGCGAGGACAAGGGAGGGAGGG
AAGGACAGGAGAAATCGTATGCGCCTTCCTCACAGCCGGGAAATGAAAGG
AATGTCGGGACGGATGAAAAAGAGGGTGGGATCATTGGCAACAGGTTGAT
CAAGAACAGCAGCAGTAGTAGTAGCAGCAGCAGCAGCGGCAGCGGAATAC
AGATAGAAAGGAAATGCATCCAGAAGGCGAAGGGAGGGAGGGAAGAAAGA
AAAGGAGGGAAGGACGATGTTGCAGGCAGTTTAAGGAAGATGTGTCGTGG
TGTGAGTGCCATTGTGTGTATGGTTGTGTGTGAGAGAGTGTCGATGCATA
AATATTGGAATTATGGGGAAAATGGCAGGCAACAGGAAGTGTCGTTGAAA
GAGAGGGTGGGACAAAGATTTGCTCTGCCACCACAAGCCCAATCGCTCCC
CGACGAAAAGAAGAAGATGAAGCCGCAGTGTTTCGCAAGCAACGTGGGAC
GAGACGAGGGTCCTTGTTTTCCCCACCATTTAGGATTTTAA
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Coding sequence (CDS) from alignment at chr21:227372..229712+

>NO21G00670.1 ID=NO21G00670.1|Name=NO21G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at chr21:227372..229712+ (Nannochloropsis oceanica)
ATGCCGACCTATTTGGGCATCGAAGGCGGGGGCACCACCTGGAAGGTGGC
TATCGCCCAAGACAAGCCGGACAACATCACAGAATCCATTCGCTTTGACA
CGACGAGCCCCGAAGAGACCTTTGGCAAGATCAAGGAATGGATAAAGGAC
AAGAATTACGACTCTGTGGGCATTGCCACCTTCGGACCTGTGGACCCTAA
ACTCACTTCGCCGACATATGGCCACATCACCACCACCCCCAAGCCTGGCT
GGAAGAACGTTGACGTCGTGGGCGCCTTGACGGATGGCAGCAAACCCATT
CTCTTCGACACAGACGTGAACGCCCCCGCCCTGGCCGAGTTCACCTTCCA
TGCCTCCTCCCCTACGCAATCCTCAGTGGCCTACATCACGGTCGGCACGG
GGGTGGGCGTCGGGCTGGTGATCAATGGGAAGACGGTGCATGGCCTCGTG
CACCCAGAGGGCGGGCACGTCCCTCCCTTCCGTCTGCCTTCGGACGGGAT
TAAAGGGAACGACCTGTACAAGGACATCGAGGGTCTCTCCAACACCATCG
CCATTGCCAGTAAGAAGGGCATTGACAGGCACTTGCTCAAGACCATAGGA
GATGATGACGCGGTATGGGACAGCGTGGCCCATGCCTTGGGCTCTCTTTG
CGCGACGTTGGTCCTGATGGTGTCCGTGGAGAGGATCGTCATCTCCGGTG
GCGTCTTGAACCGCACCATCCTCTACCCCAAAATCCGGGCCAAGACCCTC
GAGATTCTGAAAGGGTATATCGTGCACCCGCTCCTCACGCCCGCCCTCAT
CGACCAGTACATCACCCCCTCCGAGTGGGGAGACAACGCCGGCATCGTGG
GGGCCTTGACGCTGGCTAAGGTCGCCCTAGACGACAAGGGGAAAAACTCG
GTGCTGGGGAAGGCACGGGCATATGTGTGCAAACACGGAGCGGCGGTGTT
TCTCGGCGTGGTCTTGGGGGCTGCCGCCACTGCGCCGGGAAATGAAAGGA
ATGTCGGGACGGATGAAAAAGAGGGTGGGATCATTGGCAACAGGTTGATC
AAGAACAGCAGCAGTAGTAGTAGCAGCAGCAGCAGCGGCAGCGGAATACA
GATAGAAAGGAAATGCATCCAGAAGGCGAAGGGAGGGAGGGAAGAAAGAA
AAGGAGGGAAGGACGATGTTGCAGGCAGTTTAAGGAAGATGTGTCGTGGT
GTGAGTGCCATTGTGTGTATGGTTGTGTGTGAGAGAGTGTCGATGCATAA
ATATTGGAATTATGGGGAAAATGGCAGGCAACAGGAAGTGTCGTTGAAAG
AGAGGGTGGGACAAAGATTTGCTCTGCCACCACAAGCCCAATCGCTCCCC
GACGAAAAGAAGAAGATGAAGCCGCAGTGTTTCGCAAGCAACGTGGGACG
AGACGAGGGTCCTTGTTTTCCCCACCATTTAGGATTTTAA
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Synonyms
Publications