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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr21 | genome | chr21:216098..218582 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G00630.1 vs.
Match: EWM22558.1 (hypothetical protein Naga_101264g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 181.0 bits (458), Expect = 1.100e-41 Identity = 105/192 (54.69%), Postives = 132/192 (68.75%), Query Frame = 0
Query: 98 SSSSSRVKSTEILALSVPPPSQTPNLPPPHKPSSTVMAERRAQSIMKQLEQSLGVKRRYLSDMRPPFQHFYMRDLITCILRAVLQAALVPVQRILDDILEQI--------------QEEDDEDWMEDEEEYDEGKGLIQVDLPDWKLYFQNFKWRVLVNVARSLGTKTIHYSVLDPLALLCLRPRTVDRLTK 276
S SS S + A PP +P+ P + S E++A+SI+K LEQSLGVKRRYLSDM+ PFQHF RDL+ C+LR++LQAAL P+QR LDD+LEQI +EE++E+ E+EEE +E + LI + LPDW++YFQNF+ RVL NV RSLGTKT+HYSVLDPL L PRTVDRLTK
Sbjct: 141 SPPSSSSSSFPLAASPFPPGPSSPDSRPVTQKDS----EKKARSILKHLEQSLGVKRRYLSDMKAPFQHFRTRDLLHCLLRSLLQAALHPMQRFLDDVLEQIHEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDLIHIALPDWRMYFQNFELRVLTNVTRSLGTKTLHYSVLDPLCLHLFDPRTVDRLTK 328
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G00630.1 ID=NO21G00630.1|Name=NO21G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2266bp
AACAGGCGAATCTTTCTCCCGCCCGTGGACTAAGAGAAGGCGGGGCATAC
GTGTTGCGGGGTGGCAGTTTGGGACCTCTCCCTCCATCCTCAGCAACGCA
GGCGCAGGGGAGGTTCTCGGCCAGAGCAAGCAAGCAGGCCTTCAATCAAT
TCAATCAGTTCAAATAAAACAATCAGGTCAACACCGCAAGCATGCAAGCT
CATCTACTGGCCACCGCCACGGGAGGAGGCAGCGTTTGGTGCAGCCCTCA
CCGCCAGCACCGTAGACGGCGGCCGCAGGGCACGCAGGCGTTTGTCGCCC
CGCAGCTAAACAGCGCGTGCCTCTTCCCCCGAGGAAAACCCTACACCTCC
TCCTCTCCCTTCTTCTCCAAATGTACCTCCGCCCCCCCCCCCTCGTTATC
CCTGCTCGTATCTCTTCTCTCTCCGCACCTCTTGCATGACGAATCCCGAA
GCGAAAGGACAATCAAACCTAACAGAGGTAACAGCAGCAGCAGCAGCAGG
GTCAAGAGTACCGAGATTCTCGCCCTTTCTGTTCCGCCTCCTTCCCAGAC
CCCCAACCTTCCCCCACCCCACAAACCATCCTCCACCGTCATGGCCGAGC
GGAGGGCCCAGTCAATCATGAAGCAGCTCGAGCAGTCTCTGGGAGTTAAA
CGGAGGTATTTGTCCGACATGAGGCCTCCATTCCAACACTTCTACATGCG
GGATTTAATCACTTGCATCCTTAGGGCAGTGCTACAGGCGGCGTTAGTCC
CCGTTCAACGGATTTTGGACGATATTCTAGAACAAATCCAGGAGGAGGAC
GATGAGGACTGGATGGAGGATGAGGAGGAGTACGACGAAGGGAAGGGCTT
AATCCAAGTGGACTTACCGGATTGGAAGTTGTATTTTCAAAACTTCAAAT
GGCGGGTGCTGGTGAACGTGGCAAGAAGTCTGGGGACCAAGACAATCCAT
TATAGCGTGCTGGACCCATTGGCGCTGCTGTGCTTGAGGCCCCGGACGGT
GGACAGGCTTACCAAGGATCCCATTCTCTCGGCCCGTCGAAAGGACACTC
GCCTGGGGCGTCTTAATGCCTCCCATGCTATGCTCAAGACCGTGCTTTAC
GCAAACCTTACGTCCTCCCTCTCCAATCTTCTGTACGATTGCCTCCTGCT
GGGATATGACTTGCTAATTGAAAGCTACCCGGAGTTTCGATTGGGGCCTC
CCGGGCCGTTGCTTGTTATGCCTAAAAAGAAGGAGAAGAAAGACGAGAAG
AAGATGATGAAGATGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGGAACAGATGGAGGGGGGAAGAGTTGGAGGGAGGGAAAGAGGACGAAGG
GGATGGAGGGCTGGGGGGAGAAGATCGTGATTCGAGAGGAGCGGGTGCTG
TTTGATGTGGACAAGGAGGACGAGGAGAAGACGGAGGACGAAGAAGGAGG
GAAGGAGGGAGGGGAGGGGAGCGGGAGTAGCAGTGGGAGTGGGAGCGAGG
GAGGCTTTTTGAAAGTGCCCAACGGGATGATGGATGTAGTGAGCGTCCCT
GCATCCCCTGTGTTGCTGTCACCAAGGGAGGAAGGGGGGAACGAAGGGGC
AGTAGAAGAGAAGAGGGGGTTGATGGATATGGAGGGTCTGCAGACTCCCC
CTGTGGTGTTGTCGCCAAGGGAGGGCGGGGGGTGCGGGGAAGGGGGAGGG
GGGGATGGAGGGGAGGAGGGGGAGGAACAAATAAGTGGAAGTGGGGAGAG
AGGGGGGGAGGGAGAGGGGAGGGAAGGGGATGAAGAAGATAGGAGTATGA
TGATCTCGCCGAGGGGATCTTCAGTGGCGGACGAGAGAGAAGAGGGAGAG
GAGACGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGAC
AGAGACGGCACGGCAAGAACGTCGTCGGCGAGAGGTCGCGGCTCGACTCC
GCAACATCTTTCTAGTGAATGGCACGGCCTACGTGAGTAGCCTTGTGCTG
ATGCCCCTTGGTACATTTCTCCTACCCGGATGGGGAACAACAGTGGGCAT
GATACTGGCAGACTGCGTGCCGCTGGTGGTGGGGCTGTGAACACATGCGG
GCCCAGCCCATCGCCGTCTCCCCCACTAGAGAGTGATGACGGGGAGATGG
ACAGAGAGGATGGCGAGAGGGATGGCGGGCGGGAAGGAGACATAGGTGGG
AAGGGGGAGGAAGGAGGCAGGAGGGAGGGAGGGAGCGAAACGGGTAGAAG
CGAGGGAGGGCGGGAG back to topprotein sequence of NO21G00630.1 >NO21G00630.1-protein ID=NO21G00630.1-protein|Name=NO21G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp
MQAHLLATATGGGSVWCSPHRQHRRRRPQGTQAFVAPQLNSACLFPRGKP
YTSSSPFFSKCTSAPPPSLSLLVSLLSPHLLHDESRSERTIKPNRGNSSS
SSRVKSTEILALSVPPPSQTPNLPPPHKPSSTVMAERRAQSIMKQLEQSL
GVKRRYLSDMRPPFQHFYMRDLITCILRAVLQAALVPVQRILDDILEQIQ
EEDDEDWMEDEEEYDEGKGLIQVDLPDWKLYFQNFKWRVLVNVARSLGTK
TIHYSVLDPLALLCLRPRTVDRLTKDPILSARRKDTRLGRLNASHAMLKT
VLYANLTSSLSNLLYDCLLLGYDLLIESYPEFRLGPPGPLLVMPKKKEKK
DEKKMMKMKEEEEEEEEEEEGTDGGGKSWREGKRTKGMEGWGEKIVIREE
RVLFDVDKEDEEKTEDEEGGKEGGEGSGSSSGSGSEGGFLKVPNGMMDVV
SVPASPVLLSPREEGGNEGAVEEKRGLMDMEGLQTPPVVLSPREGGGCGE
GGGGDGGEEGEEQISGSGERGGEGEGREGDEEDRSMMISPRGSSVADERE
EGEETEEEEEEEEVEEEEETETARQERRRREVAARLRNIFLVNGTAYVSS
LVLMPLGTFLLPGWGTTVGMILADCVPLVVGL* back to topmRNA from alignment at chr21:216098..218582- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G00630.1 ID=NO21G00630.1|Name=NO21G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2485bp|location=Sequence derived from alignment at chr21:216098..218582- (Nannochloropsis oceanica)
AACAGGCGAATCTTTCTCCCGCCCGTGGACTAAGAGAAGGCGGGGCATAC
GTGTTGCGGGGTGGCAGTTTGGGACCTCTCCCTCCATCCTCAGCAACGCA
GGCGCAGGGGAGGTTCTCGGCCAGAGCAAGCAAGCAGGCCTTCAATCAAT
TCAATCAGTTCAAATAAAACAATCAGGTCAACACCGCAAGCATGCAAGCT
CATCTACTGGCCACCGCCACGGGAGGAGGCAGCGTTTGGTGCAGCCCTCA
CCGCCAGCACCGTAGACGGCGGCCGCAGGGCACGCAGGCGTTTGTCGCCC
CGCAGCTAAACAGCGCGTGCCTCTTCCCCCGAGGAAAACCCTACACCTCC
TCCTCTCCCTTCTTCTCCAAATGTACCTCCGCCCCCCCCCCCTCGTTATC
CCTGCTCGTATCTCTTCTCTCTCCGCACCTCTTGCATGACGAATCCCGAA
GCGAAAGGACAATCAAACCTAACAGAGGTAACAGCAGCAGCAGCAGCAGG
GTCAAGAGTACCGAGATTCTCGCCCTTTCTGTTCCGCCTCCTTCCCAGAC
CCCCAACCTTCCCCCACCCCACAAACCATCCTCCACCGTCATGGCCGAGC
GGAGGGCCCAGTCAATCATGAAGCAGCTCGAGCAGTCTCTGGGAGTTAAA
CGGAGGTATTTGTCCGACATGAGGCCTCCATTCCAACACTTCTACATGCG
GGATTTAATCACTTGCATCCTTAGGGCAGTGCTACAGGCGGCGTTAGTCC
CCGTTCAACGGATTTTGGACGATATTCTAGAACAAATCCAGGAGGAGGAC
GATGAGGACTGGATGGAGGATGAGGAGGAGTACGACGAAGGGAAGGGCTT
AATCCAAGTGGACTTACCGGATTGGAAGTTGTATTTTCAAAACTTCAAAT
GGCGGGTGCTGGTGAACGTGGCAAGAAGTCTGGGGACCAAGACAATCCAT
TATAGCGTGCTGGACCCATTGGCGCTGCTGTGCTTGAGGCCCCGGACGGT
GGACAGGCTTACCAAGGTCAGAGAGGAGGAAGGGAGGGAGGGAGGGCGGG
AGGGAAAGGTGAATCATCATATCATCTACTGAGTCTCTATGTATCATCTA
TGTCTCTATATCCCTTGTTCATAATTCTCTATCCTTTCTGTCCATACATC
AACCTCACCTTCTCTTCCTTCCCTGATCCTCCTTCCCGGCCTCCTCGTCC
TCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTCCAGGATCCCATTCTCTCG
GCCCGTCGAAAGGACACTCGCCTGGGGCGTCTTAATGCCTCCCATGCTAT
GCTCAAGACCGTGCTTTACGCAAACCTTACGTCCTCCCTCTCCAATCTTC
TGTACGATTGCCTCCTGCTGGGATATGACTTGCTAATTGAAAGCTACCCG
GAGTTTCGATTGGGGCCTCCCGGGCCGTTGCTTGTTATGCCTAAAAAGAA
GGAGAAGAAAGACGAGAAGAAGATGATGAAGATGAAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGGAACAGATGGAGGGGGGAAGAGTTGGAGG
GAGGGAAAGAGGACGAAGGGGATGGAGGGCTGGGGGGAGAAGATCGTGAT
TCGAGAGGAGCGGGTGCTGTTTGATGTGGACAAGGAGGACGAGGAGAAGA
CGGAGGACGAAGAAGGAGGGAAGGAGGGAGGGGAGGGGAGCGGGAGTAGC
AGTGGGAGTGGGAGCGAGGGAGGCTTTTTGAAAGTGCCCAACGGGATGAT
GGATGTAGTGAGCGTCCCTGCATCCCCTGTGTTGCTGTCACCAAGGGAGG
AAGGGGGGAACGAAGGGGCAGTAGAAGAGAAGAGGGGGTTGATGGATATG
GAGGGTCTGCAGACTCCCCCTGTGGTGTTGTCGCCAAGGGAGGGCGGGGG
GTGCGGGGAAGGGGGAGGGGGGGATGGAGGGGAGGAGGGGGAGGAACAAA
TAAGTGGAAGTGGGGAGAGAGGGGGGGAGGGAGAGGGGAGGGAAGGGGAT
GAAGAAGATAGGAGTATGATGATCTCGCCGAGGGGATCTTCAGTGGCGGA
CGAGAGAGAAGAGGGAGAGGAGACGGAGGAGGAGGAGGAGGAGGAGGAGG
TGGAGGAGGAGGAGGAGACAGAGACGGCACGGCAAGAACGTCGTCGGCGA
GAGGTCGCGGCTCGACTCCGCAACATCTTTCTAGTGAATGGCACGGCCTA
CGTGAGTAGCCTTGTGCTGATGCCCCTTGGTACATTTCTCCTACCCGGAT
GGGGAACAACAGTGGGCATGATACTGGCAGACTGCGTGCCGCTGGTGGTG
GGGCTGTGAACACATGCGGGCCCAGCCCATCGCCGTCTCCCCCACTAGAG
AGTGATGACGGGGAGATGGACAGAGAGGATGGCGAGAGGGATGGCGGGCG
GGAAGGAGACATAGGTGGGAAGGGGGAGGAAGGAGGCAGGAGGGAGGGAG
GGAGCGAAACGGGTAGAAGCGAGGGAGGGCGGGAG back to topCoding sequence (CDS) from alignment at chr21:216098..218582- >NO21G00630.1 ID=NO21G00630.1|Name=NO21G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=1899bp|location=Sequence derived from alignment at chr21:216098..218582- (Nannochloropsis oceanica)
ATGCAAGCTCATCTACTGGCCACCGCCACGGGAGGAGGCAGCGTTTGGTG
CAGCCCTCACCGCCAGCACCGTAGACGGCGGCCGCAGGGCACGCAGGCGT
TTGTCGCCCCGCAGCTAAACAGCGCGTGCCTCTTCCCCCGAGGAAAACCC
TACACCTCCTCCTCTCCCTTCTTCTCCAAATGTACCTCCGCCCCCCCCCC
CTCGTTATCCCTGCTCGTATCTCTTCTCTCTCCGCACCTCTTGCATGACG
AATCCCGAAGCGAAAGGACAATCAAACCTAACAGAGGTAACAGCAGCAGC
AGCAGCAGGGTCAAGAGTACCGAGATTCTCGCCCTTTCTGTTCCGCCTCC
TTCCCAGACCCCCAACCTTCCCCCACCCCACAAACCATCCTCCACCGTCA
TGGCCGAGCGGAGGGCCCAGTCAATCATGAAGCAGCTCGAGCAGTCTCTG
GGAGTTAAACGGAGGTATTTGTCCGACATGAGGCCTCCATTCCAACACTT
CTACATGCGGGATTTAATCACTTGCATCCTTAGGGCAGTGCTACAGGCGG
CGTTAGTCCCCGTTCAACGGATTTTGGACGATATTCTAGAACAAATCCAG
GAGGAGGACGATGAGGACTGGATGGAGGATGAGGAGGAGTACGACGAAGG
GAAGGGCTTAATCCAAGTGGACTTACCGGATTGGAAGTTGTATTTTCAAA
ACTTCAAATGGCGGGTGCTGGTGAACGTGGCAAGAAGTCTGGGGACCAAG
ACAATCCATTATAGCGTGCTGGACCCATTGGCGCTGCTGTGCTTGAGGCC
CCGGACGGTGGACAGGCTTACCAAGGATCCCATTCTCTCGGCCCGTCGAA
AGGACACTCGCCTGGGGCGTCTTAATGCCTCCCATGCTATGCTCAAGACC
GTGCTTTACGCAAACCTTACGTCCTCCCTCTCCAATCTTCTGTACGATTG
CCTCCTGCTGGGATATGACTTGCTAATTGAAAGCTACCCGGAGTTTCGAT
TGGGGCCTCCCGGGCCGTTGCTTGTTATGCCTAAAAAGAAGGAGAAGAAA
GACGAGAAGAAGATGATGAAGATGAAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGAACAGATGGAGGGGGGAAGAGTTGGAGGGAGGGAAAGA
GGACGAAGGGGATGGAGGGCTGGGGGGAGAAGATCGTGATTCGAGAGGAG
CGGGTGCTGTTTGATGTGGACAAGGAGGACGAGGAGAAGACGGAGGACGA
AGAAGGAGGGAAGGAGGGAGGGGAGGGGAGCGGGAGTAGCAGTGGGAGTG
GGAGCGAGGGAGGCTTTTTGAAAGTGCCCAACGGGATGATGGATGTAGTG
AGCGTCCCTGCATCCCCTGTGTTGCTGTCACCAAGGGAGGAAGGGGGGAA
CGAAGGGGCAGTAGAAGAGAAGAGGGGGTTGATGGATATGGAGGGTCTGC
AGACTCCCCCTGTGGTGTTGTCGCCAAGGGAGGGCGGGGGGTGCGGGGAA
GGGGGAGGGGGGGATGGAGGGGAGGAGGGGGAGGAACAAATAAGTGGAAG
TGGGGAGAGAGGGGGGGAGGGAGAGGGGAGGGAAGGGGATGAAGAAGATA
GGAGTATGATGATCTCGCCGAGGGGATCTTCAGTGGCGGACGAGAGAGAA
GAGGGAGAGGAGACGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGA
GGAGGAGACAGAGACGGCACGGCAAGAACGTCGTCGGCGAGAGGTCGCGG
CTCGACTCCGCAACATCTTTCTAGTGAATGGCACGGCCTACGTGAGTAGC
CTTGTGCTGATGCCCCTTGGTACATTTCTCCTACCCGGATGGGGAACAAC
AGTGGGCATGATACTGGCAGACTGCGTGCCGCTGGTGGTGGGGCTGTGA back to top
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