NO21G00630, NO21G00630 (gene) Nannochloropsis oceanica

Overview
NameNO21G00630
Unique NameNO21G00630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2485
Alignment locationchr21:216098..218582 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:216098..218582 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G00630 vs. NCBI_GenBank
Match: EWM22558.1 (hypothetical protein Naga_101264g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 146.0 bits (367), Expect = 4.000e-31
Identity = 142/330 (43.03%), Postives = 179/330 (54.24%), Query Frame = 0 
Query:    1 MQAH-LLATATGGGSVWCSPHRQHRRRRPQGTQAFVAPQLNSACLFPRGKPYTSSSPFFSKCTSAPPPSL-----------SLLVSLLSPHL-LHDESRSERTIKPNRGNSSSSSRVKSTE------------ILALSVPP----------------PSQTPNLPPPHKPSSTVMAERRAQSIMKQLEQSLGVKRRYLSDMRPPFQHFYMRDLITCILRAVLQAALVPVQR--------------XXXXXXXXXXXXXXXXXXXXXXXYDEGKGLIQVDLPDWKLYFQNFKWRVLVNVARSLGTKTIHYSVLDPLALLCLRPRTVDRLTK 276
            MQ+H L+AT+    S   S  R+HR  R       ++P  +     P       +S  F   + +PP  L           SLL+SLL   L LH  S +  +    R +  SS  + ++E            +LA S+ P                        P  +P +   +E++A+SI+K LEQSLGVKRRYLSDM+ PFQHF  RDL+ C+LR++LQAAL P+QR              XXXXXXXXXXXXXXXXXXXXXXX      LI + LPDW++YFQNF+ RVL NV RSLGTKT+HYSVLDPL L    PRTVDRLTK
Sbjct:    1 MQSHILMATSNAAWSPPSSHRRRHRHTRMNSLH--LSPPASPPRTSPTIPALAGNSKTFCTASCSPPLPLPSSPRSSLFPSSLLLSLLPSALDLHGPSLALTSPAKRRVHHPSSIPIAASEDDTCAGPSARPAMLACSMAPXXXXXXXXXXXXXXXXXXXXXXXXPDSRPVTQKDSEKKARSILKHLEQSLGVKRRYLSDMKAPFQHFRTRDLLHCLLRSLLQAALHPMQRFLDDVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIHIALPDWRMYFQNFELRVLTNVTRSLGTKTLHYSVLDPLCLHLFDPRTVDRLTK 328
The following BLAST results are available for this feature:
BLAST of NO21G00630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22558.14.000e-3143.03hypothetical protein Naga_101264g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004733NSK004733Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00630.1NO21G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673986gene_9471Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101264g1gene7881Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00630.1NO21G00630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00630 ID=NO21G00630|Name=NO21G00630|organism=Nannochloropsis oceanica|type=gene|length=2485bp
AACAGGCGAATCTTTCTCCCGCCCGTGGACTAAGAGAAGGCGGGGCATAC
GTGTTGCGGGGTGGCAGTTTGGGACCTCTCCCTCCATCCTCAGCAACGCA
GGCGCAGGGGAGGTTCTCGGCCAGAGCAAGCAAGCAGGCCTTCAATCAAT
TCAATCAGTTCAAATAAAACAATCAGGTCAACACCGCAAGCATGCAAGCT
CATCTACTGGCCACCGCCACGGGAGGAGGCAGCGTTTGGTGCAGCCCTCA
CCGCCAGCACCGTAGACGGCGGCCGCAGGGCACGCAGGCGTTTGTCGCCC
CGCAGCTAAACAGCGCGTGCCTCTTCCCCCGAGGAAAACCCTACACCTCC
TCCTCTCCCTTCTTCTCCAAATGTACCTCCGCCCCCCCCCCCTCGTTATC
CCTGCTCGTATCTCTTCTCTCTCCGCACCTCTTGCATGACGAATCCCGAA
GCGAAAGGACAATCAAACCTAACAGAGGTAACAGCAGCAGCAGCAGCAGG
GTCAAGAGTACCGAGATTCTCGCCCTTTCTGTTCCGCCTCCTTCCCAGAC
CCCCAACCTTCCCCCACCCCACAAACCATCCTCCACCGTCATGGCCGAGC
GGAGGGCCCAGTCAATCATGAAGCAGCTCGAGCAGTCTCTGGGAGTTAAA
CGGAGGTATTTGTCCGACATGAGGCCTCCATTCCAACACTTCTACATGCG
GGATTTAATCACTTGCATCCTTAGGGCAGTGCTACAGGCGGCGTTAGTCC
CCGTTCAACGGATTTTGGACGATATTCTAGAACAAATCCAGGAGGAGGAC
GATGAGGACTGGATGGAGGATGAGGAGGAGTACGACGAAGGGAAGGGCTT
AATCCAAGTGGACTTACCGGATTGGAAGTTGTATTTTCAAAACTTCAAAT
GGCGGGTGCTGGTGAACGTGGCAAGAAGTCTGGGGACCAAGACAATCCAT
TATAGCGTGCTGGACCCATTGGCGCTGCTGTGCTTGAGGCCCCGGACGGT
GGACAGGCTTACCAAGgtcagagaggaggaagggagggagggagggcggg
agggaaaggtgaatcatcatatcatctactgagtctctatgtatcatcta
tgtctctatatcccttgttcataattctctatcctttctgtccatacatc
aacctcaccttctcttccttccctgatcctccttcccggcctcctcgtcc
tcctcctccccctcctcctccccctcctcctccagGATCCCATTCTCTCG
GCCCGTCGAAAGGACACTCGCCTGGGGCGTCTTAATGCCTCCCATGCTAT
GCTCAAGACCGTGCTTTACGCAAACCTTACGTCCTCCCTCTCCAATCTTC
TGTACGATTGCCTCCTGCTGGGATATGACTTGCTAATTGAAAGCTACCCG
GAGTTTCGATTGGGGCCTCCCGGGCCGTTGCTTGTTATGCCTAAAAAGAA
GGAGAAGAAAGACGAGAAGAAGATGATGAAGATGAAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGGAACAGATGGAGGGGGGAAGAGTTGGAGG
GAGGGAAAGAGGACGAAGGGGATGGAGGGCTGGGGGGAGAAGATCGTGAT
TCGAGAGGAGCGGGTGCTGTTTGATGTGGACAAGGAGGACGAGGAGAAGA
CGGAGGACGAAGAAGGAGGGAAGGAGGGAGGGGAGGGGAGCGGGAGTAGC
AGTGGGAGTGGGAGCGAGGGAGGCTTTTTGAAAGTGCCCAACGGGATGAT
GGATGTAGTGAGCGTCCCTGCATCCCCTGTGTTGCTGTCACCAAGGGAGG
AAGGGGGGAACGAAGGGGCAGTAGAAGAGAAGAGGGGGTTGATGGATATG
GAGGGTCTGCAGACTCCCCCTGTGGTGTTGTCGCCAAGGGAGGGCGGGGG
GTGCGGGGAAGGGGGAGGGGGGGATGGAGGGGAGGAGGGGGAGGAACAAA
TAAGTGGAAGTGGGGAGAGAGGGGGGGAGGGAGAGGGGAGGGAAGGGGAT
GAAGAAGATAGGAGTATGATGATCTCGCCGAGGGGATCTTCAGTGGCGGA
CGAGAGAGAAGAGGGAGAGGAGACGGAGGAGGAGGAGGAGGAGGAGGAGG
TGGAGGAGGAGGAGGAGACAGAGACGGCACGGCAAGAACGTCGTCGGCGA
GAGGTCGCGGCTCGACTCCGCAACATCTTTCTAGTGAATGGCACGGCCTA
CGTGAGTAGCCTTGTGCTGATGCCCCTTGGTACATTTCTCCTACCCGGAT
GGGGAACAACAGTGGGCATGATACTGGCAGACTGCGTGCCGCTGGTGGTG
GGGCTGTGAACACATGCGGGCCCAGCCCATCGCCGTCTCCCCCACTAGAG
AGTGATGACGGGGAGATGGACAGAGAGGATGGCGAGAGGGATGGCGGGCG
GGAAGGAGACATAGGTGGGAAGGGGGAGGAAGGAGGCAGGAGGGAGGGAG
GGAGCGAAACGGGTAGAAGCGAGGGAGGGCGGGAG
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protein sequence of NO21G00630.1

>NO21G00630.1-protein ID=NO21G00630.1-protein|Name=NO21G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp
MQAHLLATATGGGSVWCSPHRQHRRRRPQGTQAFVAPQLNSACLFPRGKP
YTSSSPFFSKCTSAPPPSLSLLVSLLSPHLLHDESRSERTIKPNRGNSSS
SSRVKSTEILALSVPPPSQTPNLPPPHKPSSTVMAERRAQSIMKQLEQSL
GVKRRYLSDMRPPFQHFYMRDLITCILRAVLQAALVPVQRILDDILEQIQ
EEDDEDWMEDEEEYDEGKGLIQVDLPDWKLYFQNFKWRVLVNVARSLGTK
TIHYSVLDPLALLCLRPRTVDRLTKDPILSARRKDTRLGRLNASHAMLKT
VLYANLTSSLSNLLYDCLLLGYDLLIESYPEFRLGPPGPLLVMPKKKEKK
DEKKMMKMKEEEEEEEEEEEGTDGGGKSWREGKRTKGMEGWGEKIVIREE
RVLFDVDKEDEEKTEDEEGGKEGGEGSGSSSGSGSEGGFLKVPNGMMDVV
SVPASPVLLSPREEGGNEGAVEEKRGLMDMEGLQTPPVVLSPREGGGCGE
GGGGDGGEEGEEQISGSGERGGEGEGREGDEEDRSMMISPRGSSVADERE
EGEETEEEEEEEEVEEEEETETARQERRRREVAARLRNIFLVNGTAYVSS
LVLMPLGTFLLPGWGTTVGMILADCVPLVVGL*
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Synonyms
Publications