NO21G00460.1, NO21G00460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00460.1
Unique NameNO21G00460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length966
Alignment locationchr21:164097..166205 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:164097..166205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00460.1 vs.
Match: CBJ25982.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 247.7 bits (631), Expect = 3.900e-62
Identity = 134/249 (53.82%), Postives = 182/249 (73.09%), Query Frame = 0 
Query:    4 ASLRNAIPRKTNKERSQPAARKKYGLLEKHKDYVERAKDFNRKKKTISSLRQKALFKNPDEFYFAMTKSKTKGGVHQVTPEEASLPHGHIALLKTQDMRYVNMKRALDTKKAERLQAGLHFLLDEPANKHTVFVDSEADVEAFDPAKHFNTVPALAGRAFNRPRKETLEAATSVQGVASVPQLQKVRKQREKAYKELGARLKRSETMKQVLERMQVEKNVM-GKGRKRKVQDAEDGKPPVYKWKRERRK 252
            +SLRNA+ R  +KER+QPA+R+K GLLEKHKDYV RA+++ +K+  + +L+ KA  KNPDEFYFAM + KT+GGVH +   E +LPH  + LLKTQD+ YV+  R+ D +KA +L+  LH L   P NKHT+F DSE + + FD AKHF+TVP LA RAFNRPRK+TLE A  V G  +  QL+KV K+R+ +Y EL  RL+R+E MK+    ++ ++ VM  KG KRKVQ+A+DG+P VY+WK+ER +
Sbjct:    2 SSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAE-TLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFFDSEKEAKEFDVAKHFDTVPELADRAFNRPRKDTLEKA-QVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 248
The following BLAST results are available for this feature:
BLAST of NO21G00460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ25982.13.900e-6253.82conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00460NO21G00460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00460.1NO21G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00460.1.cds1NO21G00460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00460.1.cds2NO21G00460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00460.1.cds3NO21G00460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00460.1.cds4NO21G00460.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00460.1.cds5NO21G00460.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00460.1.cds6NO21G00460.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00460.1.cds7NO21G00460.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00460.1 ID=NO21G00460.1|Name=NO21G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ACAGGCAAGCACAGCCAGGCCAGGATCAGGACAGTGCGCACGTGGTAAAG
GCGCCTCCATCGGACCTTCTATCCACTCGCACGTTTCACACCACTGGACA
TCAGCCTCGCCCTCTGCCTCGTTCTACCTCCACGACAGCACACAAAGCCC
AGCTAAATCTAATACACCACAAAAGCCATGCCATACGCTTCCCTGCGCAA
CGCCATACCCCGCAAGACCAACAAGGAACGGAGCCAGCCCGCAGCACGCA
AGAAATATGGCCTCCTGGAAAAACACAAGGATTACGTGGAGCGTGCCAAA
GACTTCAATCGTAAGAAGAAAACTATCAGCTCCCTCCGTCAGAAGGCGCT
TTTCAAGAACCCAGATGAGTTCTACTTCGCCATGACCAAGAGCAAGACCA
AGGGCGGCGTTCACCAGGTCACCCCCGAAGAGGCCTCTCTTCCCCACGGC
CACATCGCCCTGTTAAAAACCCAGGACATGCGATATGTCAACATGAAGAG
AGCGCTGGATACGAAGAAAGCTGAGAGGCTCCAGGCTGGTCTTCACTTCC
TCCTCGACGAGCCCGCCAACAAGCACACCGTCTTCGTCGATTCCGAGGCG
GACGTGGAGGCTTTCGATCCCGCTAAGCATTTTAATACAGTCCCGGCGTT
GGCTGGCAGGGCCTTTAATAGACCAAGAAAGGAGACCCTGGAGGCCGCCA
CCTCCGTCCAAGGCGTGGCTTCGGTCCCTCAGCTCCAGAAAGTGCGGAAG
CAGAGAGAAAAGGCTTACAAGGAGTTGGGGGCGCGACTCAAGAGGAGCGA
GACCATGAAGCAGGTCCTGGAGAGGATGCAGGTGGAGAAGAACGTGATGG
GCAAGGGCCGCAAGCGCAAGGTTCAGGACGCGGAGGATGGGAAGCCGCCC
GTGTATAAGTGGAAACGAGAGCGGAGAAAGTAGACGAGGAGGGGAGGGGA
GGGAGGGAAGGAGGGA
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protein sequence of NO21G00460.1

>NO21G00460.1-protein ID=NO21G00460.1-protein|Name=NO21G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MPYASLRNAIPRKTNKERSQPAARKKYGLLEKHKDYVERAKDFNRKKKTI
SSLRQKALFKNPDEFYFAMTKSKTKGGVHQVTPEEASLPHGHIALLKTQD
MRYVNMKRALDTKKAERLQAGLHFLLDEPANKHTVFVDSEADVEAFDPAK
HFNTVPALAGRAFNRPRKETLEAATSVQGVASVPQLQKVRKQREKAYKEL
GARLKRSETMKQVLERMQVEKNVMGKGRKRKVQDAEDGKPPVYKWKRERR
K*
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mRNA from alignment at chr21:164097..166205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00460.1 ID=NO21G00460.1|Name=NO21G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2109bp|location=Sequence derived from alignment at chr21:164097..166205- (Nannochloropsis oceanica)
ACAGGCAAGCACAGCCAGGCCAGGATCAGGACAGTGCGCACGTGGTAAAG
GCGCCTCCATCGGACCTTCTATCCACTCGCACGTTTCACACCACTGGACA
TCAGCCTCGCCCTCTGCCTCGTTCTACCTCCACGACAGCACACAAAGCCC
AGCTAAATCTAATACACCACAAAAGCCATGCCATACGCTTCCCTGCGCAA
CGCCATACCCCGCAAGACCAACAAGGAACGGAGCCAGCCCGCAGCACGCA
AGAAATATGTGCGTATCCCTGCTGCCCATGACCTCCCCCCTCCCCTCTCT
CTATCCCCCTTCCTTTTCGTCCTCCCCTCCCAGGCCTGTATGCGCGCGGC
TTCCTCCTGTTTGTGTGCGTGTAAAGTACAAGGCTTTTGTGCTGCAGCAA
CTGGACAACTCCGTTGGTCTCACACGCCCTACTCCTTCCGTCCCCTTCCT
TCCCTCCTCCCCGTTCATCGTCCAGGGCCTCCTGGAAAAACACAAGGATT
ACGTGGAGCGTGCCAAAGACTTCAATCGTAAGAAGAAAACTATCAGCTCC
CTCCGTCAGAAGGCGCTTTTCAAGAACCCAGATGAGTTCTACTTCGCCAT
GACCAAGAGCAAGACCAAGGGTAAGAAGAGGGGAGGGAGGGAGGGAGGGA
GGGGGGGAGGGAGACGAATGCTCTCTGACTAGCTCGTCGGCGATTCCCTA
GCCATTGCTCTAACAACCCTCCCTCCTTCCTTCCCTCCCTCCCTCCTTCC
CTCCCTCCCTCCTTCCCCCCCCAAGGCGGCGTTCACCAGGTCACCCCCGA
AGAGGCCTCTCTTCCCCACGGCCACATCGCCCTGTTAAAAACCCAGGACA
TGCGATATGTCAACATGAAGAGAGCGCTGGATACGAAGGTAGGTGGGTGG
ATTGGACACGGAGGGAGGGGAGAGGGGGAGGGAGGGGGGGAAGGAGGGAG
GGAATGAAGTATCGCCTGAGGTAGGGACAGGAACGCTGCCCTACCGGAGG
GAAGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAAAGAGGGAGGGAGGGA
GGAACGGAAGGGAAGCGATGGCAAGGTGTCAAGATTAATTGGAAACTCAT
TCTCGCCTTCACTCTGTCTATAATCTTGTGGGTGCACAGAAAGCTGAGAG
GCTCCAGGCTGGTCTTCACTTCCTCCTCGACGAGCCCGCCAACAAGCACA
CCGTCTTCGTCGATTCCGAGGTAGGCCCTCCCCCCTTCCCTCCCTCACTC
TCTCCCTCCCTTCCTCCCTCCCTCCTTCCATTTCTCACCACGCCCTCCCT
CTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCC
CTCCCTTCCAGGCGGACGTGGAGGCTTTCGATCCCGCTAAGCATTTTAAT
ACAGTCCCGGCGTTGGCTGGCAGGGCCTTTAATAGACCAAGAAAGGAGAC
CCTGGAGGTTGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGCATGGAGGG
AGGGAGGGCTTGGCTGCGTCGGGGCAAGAAGGCAGGGGTATAGAGTGAGG
CCTCACAACACGCTCATAATCCCCTCCTCCCCTCCCTCCCCCCTCCCTCC
CTCTCCCCTTCCCCCCCTCCCTCAGGCCGCCACCTCCGTCCAAGGCGTGG
CTTCGGTCCCTCAGCTCCAGAAAGTGCGGAAGCAGAGAGAAAAGGCTTAC
AAGGAGTTGGGGGCGCGACTCAAGAGGAGCGAGACCATGAAGCAGGTCCT
GGAGAGGATGCAGGTGGAGAAGAACGTGATGGTACGTCCTCCCTCCCTCC
CTCCTTCCTTCCCCCTCTTCCTTGTGTCGCTTCGCGCCATTTGCCCTCTC
GCCTCTTCATCCCCTCTCCCCTTCGCCTTCTGTTCGTGCCCTCCCCTCTC
CATCTTCCACCTTCTCCGATCTCTCCGAGCCATGCCCTGGATTATATCCC
CATAATCCCAAACCCACACTTTCCCTCCCTCCCTCCCTACAGGGCAAGGG
CCGCAAGCGCAAGGTTCAGGACGCGGAGGATGGGAAGCCGCCCGTGTATA
AGTGGAAACGAGAGCGGAGAAAGTAGACGAGGAGGGGAGGGGAGGGAGGG
AAGGAGGGA
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Coding sequence (CDS) from alignment at chr21:164097..166205-

>NO21G00460.1 ID=NO21G00460.1|Name=NO21G00460.1|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at chr21:164097..166205- (Nannochloropsis oceanica)
ATGCCATACGCTTCCCTGCGCAACGCCATACCCCGCAAGACCAACAAGGA
ACGGAGCCAGCCCGCAGCACGCAAGAAATATGGCCTCCTGGAAAAACACA
AGGATTACGTGGAGCGTGCCAAAGACTTCAATCGTAAGAAGAAAACTATC
AGCTCCCTCCGTCAGAAGGCGCTTTTCAAGAACCCAGATGAGTTCTACTT
CGCCATGACCAAGAGCAAGACCAAGGGCGGCGTTCACCAGGTCACCCCCG
AAGAGGCCTCTCTTCCCCACGGCCACATCGCCCTGTTAAAAACCCAGGAC
ATGCGATATGTCAACATGAAGAGAGCGCTGGATACGAAGAAAGCTGAGAG
GCTCCAGGCTGGTCTTCACTTCCTCCTCGACGAGCCCGCCAACAAGCACA
CCGTCTTCGTCGATTCCGAGGCGGACGTGGAGGCTTTCGATCCCGCTAAG
CATTTTAATACAGTCCCGGCGTTGGCTGGCAGGGCCTTTAATAGACCAAG
AAAGGAGACCCTGGAGGCCGCCACCTCCGTCCAAGGCGTGGCTTCGGTCC
CTCAGCTCCAGAAAGTGCGGAAGCAGAGAGAAAAGGCTTACAAGGAGTTG
GGGGCGCGACTCAAGAGGAGCGAGACCATGAAGCAGGTCCTGGAGAGGAT
GCAGGTGGAGAAGAACGTGATGGGCAAGGGCCGCAAGCGCAAGGTTCAGG
ACGCGGAGGATGGGAAGCCGCCCGTGTATAAGTGGAAACGAGAGCGGAGA
AAGTAG
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Synonyms
Publications