NO21G00250.1, NO21G00250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00250.1
Unique NameNO21G00250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length921
Alignment locationchr21:81514..83097 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:81514..83097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00250.1 vs.
Match: EWM22534.1 (Thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 237.3 bits (604), Expect = 5.800e-59
Identity = 135/259 (52.12%), Postives = 168/259 (64.86%), Query Frame = 0 
Query:   19 SSSRRILALKLFLLGMGGCALLAAVYLPGRETGIASENIRESNMRTLMGDTPAEADLLGASPARDDVIPPPDSSTAIATITMSSSSITTVAVAPTPSAAPAL-LLFPADAQLRDLTGALINANEALAGKSVGLYFGAGWCSMTRAANPGVSAWITAREADGVTLVYVSSDMDAAGLTQQQTENGWPFAVPHDSPLRTSLKEKYRVWSMHEDKAFKGRRVSGIPTMMVVGKDGEEMARLDVGMKGVDELAKWNYVEWKWE 277
            S  +  L LKL  L M  CAL+AAV+ P  + G+      +     L GD           P R +++ P       A + +++  +  V   P     P   LLFPADAQL+DLTGAL+NANEALA +SVGLYFGAGWCSMTRAANPGV+A++  RE++GVTLV+VSSD +A  L +QQ  N WPFAVP DSPLR SLKE Y VWS  E     G+R S IPT+MVVGKDG E+ARL+VG +G+ EL +WNY+EWKWE
Sbjct:  100 SGLKNSLTLKLVFLAMCACALVAAVHSP-EDDGV------DVIGTALRGDH---------GPRRANIMEP-------AALAVAAPPVAEVPPGPAQDITPEPPLLFPADAQLQDLTGALVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEGVTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRWNYLEWKWE 335
The following BLAST results are available for this feature:
BLAST of NO21G00250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22534.15.800e-5952.12Thioredoxin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00250NO21G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00250.1NO21G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00250.1.cds1NO21G00250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00250.1.cds2NO21G00250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00250.1.cds3NO21G00250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00250.1.cds4NO21G00250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00250.1 ID=NO21G00250.1|Name=NO21G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=921bp
ACAGGAGAGAATGCCTCGACTCAAAAGCCACAGCGGGAGCGGTGGTCTCC
TCCTGTCCCACGGCAGCAGCAGCAGGAGGATTCTTGCCCTTAAGCTGTTT
TTGCTGGGCATGGGCGGGTGCGCCTTGCTCGCGGCCGTGTACCTTCCTGG
GCGTGAGACAGGGATAGCAAGCGAGAACATAAGGGAAAGCAATATGCGGA
CATTAATGGGGGACACCCCCGCTGAGGCCGACCTGCTCGGCGCTTCCCCT
GCTCGCGACGACGTTATCCCCCCACCAGACTCCAGCACTGCCATTGCCAC
CATCACCATGAGTAGCAGCAGCATCACCACTGTTGCCGTCGCCCCCACCC
CTTCCGCCGCTCCTGCCCTCCTTCTTTTTCCTGCCGATGCACAGCTGCGA
GATCTGACGGGTGCGCTCATTAATGCCAACGAAGCCTTGGCCGGCAAGTC
TGTGGGGCTCTACTTCGGCGCTGGGTGGTGTAGCATGACTCGGGCCGCGA
ATCCTGGTGTTTCGGCATGGATTACGGCGAGGGAAGCGGATGGGGTGACT
TTAGTGTACGTCTCCTCTGATATGGACGCTGCTGGCCTTACACAGCAACA
AACCGAAAACGGGTGGCCATTTGCTGTCCCGCACGACAGCCCTCTTCGGA
CGAGCTTGAAGGAGAAATATAGAGTCTGGTCTATGCACGAAGACAAAGCC
TTTAAAGGAAGACGGGTATCTGGTATTCCGACAATGATGGTGGTGGGAAA
GGATGGGGAGGAAATGGCTCGCTTGGATGTGGGTATGAAGGGGGTAGATG
AGCTTGCTAAATGGAATTATGTGGAGTGGAAGTGGGAATAAAGGAGGAAG
GGGGGGGAGGTAAGATGGGGAGGAGCGAGAAGTTATGTTAAAAGAAAATT
TCAAGTATGATTATAAGAAGG
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protein sequence of NO21G00250.1

>NO21G00250.1-protein ID=NO21G00250.1-protein|Name=NO21G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MPRLKSHSGSGGLLLSHGSSSRRILALKLFLLGMGGCALLAAVYLPGRET
GIASENIRESNMRTLMGDTPAEADLLGASPARDDVIPPPDSSTAIATITM
SSSSITTVAVAPTPSAAPALLLFPADAQLRDLTGALINANEALAGKSVGL
YFGAGWCSMTRAANPGVSAWITAREADGVTLVYVSSDMDAAGLTQQQTEN
GWPFAVPHDSPLRTSLKEKYRVWSMHEDKAFKGRRVSGIPTMMVVGKDGE
EMARLDVGMKGVDELAKWNYVEWKWE*
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mRNA from alignment at chr21:81514..83097+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00250.1 ID=NO21G00250.1|Name=NO21G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1584bp|location=Sequence derived from alignment at chr21:81514..83097+ (Nannochloropsis oceanica)
ACAGGAGAGAATGCCTCGACTCAAAAGCCACAGCGGGAGCGGTGGTCTCC
TCCTGTCCCACGGCAGCAGCAGCAGGAGGATTCTTGCCCTTAAGCTGTTT
TTGCTGGGCATGGGCGGGTGCGCCTTGCTCGCGGCCGTGTACCTTCCTGG
GCGTGAGACAGGGATAGCAAGCGAGAACATAAGGGAAAGCAATATGCGGA
CATTAATGGGGGTGGGTACTGTGGTCAAGGGTGGTCGCCTGGCAGGAAAA
TGGAAGGGATGATGAGAAGAAGGAGAGTGAGAAGGAATATTCGATAGTAC
CGATCACTGGATATGGCACACGACGGCGCAGCCAGCGTTACCTAGCCCTC
TTGAGTGTCCTTGAGTAAATCCGCATCGACTTTCCTCCGTTCCAGTAGTG
TGTTGTGTTCAGGAAATGAGGGGTGAGAGGAAGGAAGCATCAGCACATAA
CTTCTACCGCGTCGGCTGTCTCTCGTCGTTGCCCACCCCCTTTATCCTCT
CACACGACACTGCACTCTCATTTTCCCGTTCATTATTGTTCCTCCATCCT
CGACACTATAGGACACCCCCGCTGAGGCCGACCTGCTCGGCGCTTCCCCT
GCTCGCGACGACGTTATCCCCCCACCAGACTCCAGCACTGCCATTGCCAC
CATCACCATGAGTAGCAGCAGCATCACCACTGTTGCCGTCGCCCCCACCC
CTTCCGCCGCTCCTGCCCTCCTTCTTTTTCCTGCCGATGCACAGCTGCGA
GATCTGACGGGTGCGCTCATTAATGCCAACGAAGCCTTGGCCGGCAAGTC
TGTGGGGCTCTACTTCGGCGCTGGGTGGTGTAGCATGACTCGGGCCGCGA
ATCCTGGTGTTTCGGCATGGATTACGGCGAGGGAAGCGGATGGGGTGACT
TTAGGTGAGGATGGAGGTATAGAGAGAAGGAGGAAGGGAGGGCGGTGATC
GATCGTACTGATTCATTTGTTTTGCATAGAGATACTTTTTTCATTTTTGG
TAGGTAATTCTCGCTTTTTATTCCCTCTTCCTACCCTCCTCTTTCGCTCT
CCCTCCTTCCCTTCCTCCCTCACACCCATTTACCCTTTTCAGTGTACGTC
TCCTCTGATATGGACGCTGCTGGCCTTACACAGCAACAAACCGAAAACGG
GTGGCCATTTGCTGTCCCGCACGACAGCCCTCTTCGGACGAGCTTGAAGG
AGAAATATAGAGTGTAAGTCAGACAAGAATAATCGCGAGGAAATATACGA
AATCAAAGATTGGTGATAGGGGATAAAATGCGCTTACCCTGTCTTCCTAT
TTCCCTCCCTTCCACGCTCCTTCCCTCTCCCTCGGTAGCTGGTCTATGCA
CGAAGACAAAGCCTTTAAAGGAAGACGGGTATCTGGTATTCCGACAATGA
TGGTGGTGGGAAAGGATGGGGAGGAAATGGCTCGCTTGGATGTGGGTATG
AAGGGGGTAGATGAGCTTGCTAAATGGAATTATGTGGAGTGGAAGTGGGA
ATAAAGGAGGAAGGGGGGGGAGGTAAGATGGGGAGGAGCGAGAAGTTATG
TTAAAAGAAAATTTCAAGTATGATTATAAGAAGG
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Coding sequence (CDS) from alignment at chr21:81514..83097+

>NO21G00250.1 ID=NO21G00250.1|Name=NO21G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at chr21:81514..83097+ (Nannochloropsis oceanica)
ATGCCTCGACTCAAAAGCCACAGCGGGAGCGGTGGTCTCCTCCTGTCCCA
CGGCAGCAGCAGCAGGAGGATTCTTGCCCTTAAGCTGTTTTTGCTGGGCA
TGGGCGGGTGCGCCTTGCTCGCGGCCGTGTACCTTCCTGGGCGTGAGACA
GGGATAGCAAGCGAGAACATAAGGGAAAGCAATATGCGGACATTAATGGG
GGACACCCCCGCTGAGGCCGACCTGCTCGGCGCTTCCCCTGCTCGCGACG
ACGTTATCCCCCCACCAGACTCCAGCACTGCCATTGCCACCATCACCATG
AGTAGCAGCAGCATCACCACTGTTGCCGTCGCCCCCACCCCTTCCGCCGC
TCCTGCCCTCCTTCTTTTTCCTGCCGATGCACAGCTGCGAGATCTGACGG
GTGCGCTCATTAATGCCAACGAAGCCTTGGCCGGCAAGTCTGTGGGGCTC
TACTTCGGCGCTGGGTGGTGTAGCATGACTCGGGCCGCGAATCCTGGTGT
TTCGGCATGGATTACGGCGAGGGAAGCGGATGGGGTGACTTTAGTGTACG
TCTCCTCTGATATGGACGCTGCTGGCCTTACACAGCAACAAACCGAAAAC
GGGTGGCCATTTGCTGTCCCGCACGACAGCCCTCTTCGGACGAGCTTGAA
GGAGAAATATAGAGTCTGGTCTATGCACGAAGACAAAGCCTTTAAAGGAA
GACGGGTATCTGGTATTCCGACAATGATGGTGGTGGGAAAGGATGGGGAG
GAAATGGCTCGCTTGGATGTGGGTATGAAGGGGGTAGATGAGCTTGCTAA
ATGGAATTATGTGGAGTGGAAGTGGGAATAA
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Synonyms
Publications