NO21G00250, NO21G00250 (gene) Nannochloropsis oceanica

Overview
NameNO21G00250
Unique NameNO21G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1584
Alignment locationchr21:81514..83097 +

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Properties
Property NameValue
DescriptionThioredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:81514..83097 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR012336Thioredoxin-like_fold
Homology
BLAST of NO21G00250 vs. NCBI_GenBank
Match: XP_005855299.1 (nucleoredoxin-like protein 2 [Nannochloropsis gaditana CCMP526] >EKU21055.1 nucleoredoxin-like protein 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 232.6 bits (592), Expect = 1.400e-57
Identity = 133/270 (49.26%), Postives = 160/270 (59.26%), Query Frame = 0
Query:   19 SSSRRILALKLFLLGMGGCALLAAVYLP------------GRETGIASENIRESNMRTLMGDTPAEADLLGASPARDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLFPADAQLRDLTGALINANEALAGKSVGLYFGAGWCSMTRAANPGVSAWITAREADGVTLVYVSSDMDAAGLTQQQTENGWPFAVPHDSPLRTSLKEKYRVWSMHEDKAFKGRRVSGIPTMMVVGKDGEEMARLDVGMKGVDELAKWNYVEWKWE 277
            S  +  L LKL  L M  CAL+AAV+ P              + G    NI E +   +     AE   +   PA+D                                     LLFPADAQL+DLTGAL+NANEALA +SVGLYFGAGWCSMTRAANPGV+A++  RE++GVTLV+VSSD +A  L +QQ  N WPFAVP DSPLR SLKE Y VWS  E     G+R S IPT+MVVGKDG E+ARL+VG +G+ EL +WNY+EWKWE
Sbjct:   20 SGLKNSLTLKLVFLAMCACALVAAVHSPEDDGVDVIGTALRGDHGPRQANIMEPSALAVAAPPVAE---VPPGPAQDITPEPP-------------------------------LLFPADAQLQDLTGALVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEGVTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRWNYLEWKWE 255          
BLAST of NO21G00250 vs. NCBI_GenBank
Match: EWM22534.1 (Thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 231.9 bits (590), Expect = 2.400e-57
Identity = 128/258 (49.61%), Postives = 155/258 (60.08%), Query Frame = 0
Query:   19 SSSRRILALKLFLLGMGGCALLAAVYLPGRETGIASENIRESNMRTLMGDTPAEADLLGASPARDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLFPADAQLRDLTGALINANEALAGKSVGLYFGAGWCSMTRAANPGVSAWITAREADGVTLVYVSSDMDAAGLTQQQTENGWPFAVPHDSPLRTSLKEKYRVWSMHEDKAFKGRRVSGIPTMMVVGKDGEEMARLDVGMKGVDELAKWNYVEWKWE 277
            S  +  L LKL  L M  CAL+AAV+ P  + G+                     D++G +   D                                     LLFPADAQL+DLTGAL+NANEALA +SVGLYFGAGWCSMTRAANPGV+A++  RE++GVTLV+VSSD +A  L +QQ  N WPFAVP DSPLR SLKE Y VWS  E     G+R S IPT+MVVGKDG E+ARL+VG +G+ EL +WNY+EWKWE
Sbjct:  100 SGLKNSLTLKLVFLAMCACALVAAVHSP-EDDGV---------------------DVIGTALRGDHGPRRANIMEPAALAVAAPPVAEVPPGPAQDITPEPPLLFPADAQLQDLTGALVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEGVTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRWNYLEWKWE 335          
BLAST of NO21G00250 vs. NCBI_GenBank
Match: XP_005832701.1 (hypothetical protein GUITHDRAFT_108595 [Guillardia theta CCMP2712] >EKX45721.1 hypothetical protein GUITHDRAFT_108595 [Guillardia theta CCMP2712])

HSP 1 Score: 98.2 bits (243), Expect = 4.200e-17
Identity = 53/156 (33.97%), Postives = 76/156 (48.72%), Query Frame = 0
Query:  126 DAQLRDLTGALINANEALAGKSVGLYFGAGWCSMTRAANPGVSAWITAREAD------GVTLVYVSSDMDAAGLTQQQTENGWPFAVPHDSPLRTSLKEKYRVWSMHEDKAFKGRRVSGIPTMMVVGKDGEEMARLDVGMKGVDELAKWNYVEWKW 276
            DA + D  G  +   +A  G++VGLYF   WC M R+  P +  +   +  D        T+V+VSSD             G    + +DSPLR  LK+K+R+W   E  +    R SGIP M+V+G+DG E+  ++   KGV  L  WN     W
Sbjct:   30 DAMVVDQDGHKMRLEDAAKGRTVGLYFAGEWCPMCRSFTPKLKEFFNEKAQDKQTGNQRATIVFVSSDFSKEAADSHFRNQGNWLYLDYDSPLRQQLKQKFRIWGGMESSSLGFDRRSGIPGMVVIGRDGNEITYMNTESKGVKALEAWNLDSNAW 185          
BLAST of NO21G00250 vs. NCBI_GenBank
Match: CEL98253.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 90.9 bits (224), Expect = 6.700e-15
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 0
Query:  142 ALAGKSVGLYFGAGWCSMTRAANPGVSAWITAREADG--VTLVYVSSDMD-AAGLTQQQTENGWPFAVPHDSPLRTSLKEKYRVWSMHEDKAFKG-RRVSGIPTMMVVGKDGEEMARLDVGMKGVDELAKWNYVEWKWE 277
            +L GKSV LYF AGWC M ++  P + ++      DG  + +++VSSD D A+     +  +G    + +D PL   LK ++ VW+  E   F+G  R +G+P ++V+G DG E+  +D   KG   L +W++    WE
Sbjct:   88 SLQGKSVALYFAAGWCPMCQSFTPVLRSFYQRVNTDGQKIEVIFVSSDGDNASQAAHMEASHGPWLRIDYDDPLTDKLKRQHGVWARRESHKFEGMTRRAGVPGVVVIGSDGHELQFMDTERKGGGALDQWDFEHKLWE 226          
BLAST of NO21G00250 vs. NCBI_GenBank
Match: OLP78913.1 (putative nucleoredoxin 1 [Symbiodinium microadriaticum])

HSP 1 Score: 72.4 bits (176), Expect = 2.500e-9
Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 0
Query:  126 DAQLRDLTGALINANEALAGKSVGLYFGAGWCSMTRAANPGVSAWITAREADGVTLVYVSSDMDAAGLTQQQTENGWPF-AVPHDSPLRTSLKEKYRVWSMHEDKAFKGRRVSGIPTMMVVGKDGEEMARLDVGMKG 262
            DA+ +++ G+      +L GKSV LYF   WC M  A  P ++ ++  ++     +V+VSSD       Q ++     F +VP  S ++ SLK K+ +W   E   + G R  GIP ++V+   GEE   LD   KG
Sbjct:  123 DAEGKEVDGS------SLEGKSVALYFAGEWCPMCTAFTPVLTEFM--KDVGDKAVVFVSSDFTKEEYDQHRSHLPSQFLSVPFGSEMQDSLKRKFHLWGGREIPKYGGDRRGGIPALVVITPGGEEQKYLDAESKG 251          
BLAST of NO21G00250 vs. NCBI_GenBank
Match: OEU23719.1 (putative nucleoredoxin [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 71.6 bits (174), Expect = 4.200e-9
Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 0
Query:  136 LINANEALAGKSVGLYFGAGWCSMTRAANPGVSAWITAREADG--VTLVYVSSDMDAAGLTQQQTENGWPFAVPHDSPLRTSLKEKYRVWSMHEDKAFKGRRVSGIPTMMVVGKDGEEMARLDVGMKGVDELAKW 269
            +I+ +E L  K V LYF AGWC M  +  P + ++    +  G  + L+Y+SSD +     ++ ++    + VP        LK+KY++W+  E   F   R SG+P ++V+ K GEE+A +    +G   LA W
Sbjct:   57 VIDLDEKLKDKRVALYFTAGWCPMCTSFEPALMSFQQNAKDAGKPIELIYISSDRNEETNIKRASQLNM-YTVPFGDQ-TAELKKKYKIWAGSETFQFGFGRRSGVPAIVVLDKTGEELAFVAAESQGAKALATW 189          
BLAST of NO21G00250 vs. NCBI_GenBank
Match: OEU23720.1 (putative nucleoredoxin [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 71.6 bits (174), Expect = 4.200e-9
Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 0
Query:  136 LINANEALAGKSVGLYFGAGWCSMTRAANPGVSAWITAREADG--VTLVYVSSDMDAAGLTQQQTENGWPFAVPHDSPLRTSLKEKYRVWSMHEDKAFKGRRVSGIPTMMVVGKDGEEMARLDVGMKGVDELAKW 269
            +I+ +E L  K V LYF AGWC M  +  P + ++    +  G  + L+Y+SSD +     ++ ++    + VP        LK+KY++W+  E   F   R SG+P ++V+ K GEE+A +    +G   LA W
Sbjct:   35 VIDLDEKLKDKRVALYFTAGWCPMCTSFEPALMSFQQNAKDAGKPIELIYISSDRNEETNIKRASQLNM-YTVPFGDQ-TAELKKKYKIWAGSETFQFGFGRRSGVPAIVVLDKTGEELAFVAAESQGAKALATW 167          
BLAST of NO21G00250 vs. NCBI_GenBank
Match: OEU23721.1 (putative nucleoredoxin [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 71.6 bits (174), Expect = 4.200e-9
Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 0
Query:  136 LINANEALAGKSVGLYFGAGWCSMTRAANPGVSAWITAREADG--VTLVYVSSDMDAAGLTQQQTENGWPFAVPHDSPLRTSLKEKYRVWSMHEDKAFKGRRVSGIPTMMVVGKDGEEMARLDVGMKGVDELAKW 269
            +I+ +E L  K V LYF AGWC M  +  P + ++    +  G  + L+Y+SSD +     ++ ++    + VP        LK+KY++W+  E   F   R SG+P ++V+ K GEE+A +    +G   LA W
Sbjct:   29 VIDLDEKLKDKRVALYFTAGWCPMCTSFEPALMSFQQNAKDAGKPIELIYISSDRNEETNIKRASQLNM-YTVPFGDQ-TAELKKKYKIWAGSETFQFGFGRRSGVPAIVVLDKTGEELAFVAAESQGAKALATW 161          
BLAST of NO21G00250 vs. NCBI_GenBank
Match: XP_005772491.1 (hypothetical protein EMIHUDRAFT_102068 [Emiliania huxleyi CCMP1516] >XP_005783922.1 hypothetical protein EMIHUDRAFT_231900 [Emiliania huxleyi CCMP1516] >EOD20062.1 hypothetical protein EMIHUDRAFT_102068 [Emiliania huxleyi CCMP1516] >EOD31493.1 hypothetical protein EMIHUDRAFT_231900 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 71.2 bits (173), Expect = 5.500e-9
Identity = 47/145 (32.41%), Postives = 75/145 (51.72%), Query Frame = 0
Query:  131 DLTGALIN---ANEALAGKSVGLYFGAGWCSMTRAANPGVSAWITAREADG--VTLVYVSSDMDAAGLTQQQTENGWPFAVPHDSPLRTSLKEKYRVWSMHEDKAFK--GRRVSGIPTMMVVGKDGEEMARLDVGMKGVDELAKW 269
            D  GA ++     + L GK V LYF AGWC M  +  P +  ++ A E  G   +L+YV SD   A   ++    G   +VP +     +LK+++++W+  E       GRR SG+P ++V+  +GEE+A +    +GV  L  W
Sbjct:   39 DQQGAALSEAATTQQLGGKRVALYFSAGWCPMCTSFEPSLQQFLQASEDSGKPCSLIYVPSDRTEAEALRRAKGLGL-LSVPFEE--ADALKKQFKIWAGAESMKLGPFGRR-SGVPALVVLSSEGEELAFVPAEAQGVRALQSW 179          
BLAST of NO21G00250 vs. NCBI_GenBank
Match: XP_008873460.1 (hypothetical protein H310_09218 [Aphanomyces invadans] >ETV97899.1 hypothetical protein H310_09218 [Aphanomyces invadans])

HSP 1 Score: 67.4 bits (163), Expect = 8.000e-8
Identity = 45/143 (31.47%), Postives = 75/143 (52.45%), Query Frame = 0
Query:  136 LINANEAL---AGKSVGLYFGAGWCSMTRAANPGVSAWITA--READGVTLVYVSSDMDAAG-LTQQQTENGWPFAVPHDSPLRTSLKEKYRVWSMHEDKAF-KGRRVSGIPTMMVVGKDGEEM---ARLDVGMKGVDELAKW 269
            L+NA  A+   A K++ LYF A WC   R   P ++ + +    +A    +V++SSD +    L   + + G   AVP D P+R  LK K+++ +  E +A     RV GIP++++V   GE +   A + +   GV +L+ W
Sbjct:   10 LVNAAGAIQEPAAKTLALYFAADWCPECRDFQPKLNEFYSKVNEQAHQFDVVFISSDANEDDQLAHFRNKQGPWLAVPFDDPIRDELKRKFKICAKKEMEAVGVSERVGGIPSVVIVTSSGEVVDADAAIKIDTDGVQDLSAW 152          
The following BLAST results are available for this feature:
BLAST of NO21G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 18
Match NameE-valueIdentityDescription
XP_005855299.11.400e-5749.26nucleoredoxin-like protein 2 [Nannochloropsis gadi... [more]
EWM22534.12.400e-5749.61Thioredoxin [Nannochloropsis gaditana][more]
XP_005832701.14.200e-1733.97hypothetical protein GUITHDRAFT_108595 [Guillardia... [more]
CEL98253.16.700e-1534.53unnamed protein product [Vitrella brassicaformis C... [more]
OLP78913.12.500e-932.85putative nucleoredoxin 1 [Symbiodinium microadriat... [more]
OEU23719.14.200e-931.85putative nucleoredoxin [Fragilariopsis cylindrus C... [more]
OEU23720.14.200e-931.85putative nucleoredoxin [Fragilariopsis cylindrus C... [more]
OEU23721.14.200e-931.85putative nucleoredoxin [Fragilariopsis cylindrus C... [more]
XP_005772491.15.500e-932.41hypothetical protein EMIHUDRAFT_102068 [Emiliania ... [more]
XP_008873460.18.000e-831.47hypothetical protein H310_09218 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR061ngnoR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00250.1NO21G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606232gene_9510Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100290g4gene7909Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00250.1NO21G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00250 ID=NO21G00250|Name=NO21G00250|organism=Nannochloropsis oceanica|type=gene|length=1584bp
ACAGGAGAGAATGCCTCGACTCAAAAGCCACAGCGGGAGCGGTGGTCTCC
TCCTGTCCCACGGCAGCAGCAGCAGGAGGATTCTTGCCCTTAAGCTGTTT
TTGCTGGGCATGGGCGGGTGCGCCTTGCTCGCGGCCGTGTACCTTCCTGG
GCGTGAGACAGGGATAGCAAGCGAGAACATAAGGGAAAGCAATATGCGGA
CATTAATGGGGgtgggtactgtggtcaagggtggtcgcctggcaggaaaa
tggaagggatgatgagaagaaggagagtgagaaggaatattcgatagtac
cgatcactggatatggcacacgacggcgcagccagcgttacctagccctc
ttgagtgtccttgagtaaatccgcatcgactttcctccgttccagtagtg
tgttgtgttcaggaaatgaggggtgagaggaaggaagcatcagcacataa
cttctaccgcgtcggctgtctctcgtcgttgcccaccccctttatcctct
cacacgacactgcactctcattttcccgttcattattgttcctccatcct
cgacactatagGACACCCCCGCTGAGGCCGACCTGCTCGGCGCTTCCCCT
GCTCGCGACGACGTTATCCCCCCACCAGACTCCAGCACTGCCATTGCCAC
CATCACCATGAGTAGCAGCAGCATCACCACTGTTGCCGTCGCCCCCACCC
CTTCCGCCGCTCCTGCCCTCCTTCTTTTTCCTGCCGATGCACAGCTGCGA
GATCTGACGGGTGCGCTCATTAATGCCAACGAAGCCTTGGCCGGCAAGTC
TGTGGGGCTCTACTTCGGCGCTGGGTGGTGTAGCATGACTCGGGCCGCGA
ATCCTGGTGTTTCGGCATGGATTACGGCGAGGGAAGCGGATGGGGTGACT
TTAGgtgaggatggaggtatagagagaaggaggaagggagggcggtgatc
gatcgtactgattcatttgttttgcatagagatacttttttcatttttgg
taggtaattctcgctttttattccctcttcctaccctcctctttcgctct
ccctccttcccttcctccctcacacccatttacccttttcagTGTACGTC
TCCTCTGATATGGACGCTGCTGGCCTTACACAGCAACAAACCGAAAACGG
GTGGCCATTTGCTGTCCCGCACGACAGCCCTCTTCGGACGAGCTTGAAGG
AGAAATATAGAGTgtaagtcagacaagaataatcgcgaggaaatatacga
aatcaaagattggtgataggggataaaatgcgcttaccctgtcttcctat
ttccctcccttccacgctccttccctctccctcggtagCTGGTCTATGCA
CGAAGACAAAGCCTTTAAAGGAAGACGGGTATCTGGTATTCCGACAATGA
TGGTGGTGGGAAAGGATGGGGAGGAAATGGCTCGCTTGGATGTGGGTATG
AAGGGGGTAGATGAGCTTGCTAAATGGAATTATGTGGAGTGGAAGTGGGA
ATAAAGGAGGAAGGGGGGGGAGGTAAGATGGGGAGGAGCGAGAAGTTATG
TTAAAAGAAAATTTCAAGTATGATTATAAGAAGG
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protein sequence of NO21G00250.1

>NO21G00250.1-protein ID=NO21G00250.1-protein|Name=NO21G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MPRLKSHSGSGGLLLSHGSSSRRILALKLFLLGMGGCALLAAVYLPGRET
GIASENIRESNMRTLMGDTPAEADLLGASPARDDVIPPPDSSTAIATITM
SSSSITTVAVAPTPSAAPALLLFPADAQLRDLTGALINANEALAGKSVGL
YFGAGWCSMTRAANPGVSAWITAREADGVTLVYVSSDMDAAGLTQQQTEN
GWPFAVPHDSPLRTSLKEKYRVWSMHEDKAFKGRRVSGIPTMMVVGKDGE
EMARLDVGMKGVDELAKWNYVEWKWE*
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Synonyms
Publications