NO21G00120, NO21G00120 (gene) Nannochloropsis oceanica

Overview
NameNO21G00120
Unique NameNO21G00120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length770
Alignment locationchr21:34461..35230 -

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Properties
Property NameValue
DescriptionCytochrome b-c1 complex subunit 6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:34461..35230 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008121ubiquinol-cytochrome-c reductase activity
Vocabulary: Biological Process
TermDefinition
GO:0006122mitochondrial electron transport, ubiquinol to cytochrome c
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036811Ubol_cytC_Rdtase_hinge_dom_sf
IPR003422Cyt_b-c1_6
IPR023184Ubol_cytC_Rdtase_hinge_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Homology
[Close]
BLAST of NO21G00120 vs. NCBI_GenBank
Match: XP_009825435.1 (hypothetical protein H257_03157 [Aphanomyces astaci] >ETV85417.1 hypothetical protein H257_03157 [Aphanomyces astaci])

HSP 1 Score: 88.6 bits (218), Expect = 8.200e-15
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 0 
Query:    1 MADEEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEWLKCIDKHSAKAVLKALK 68
            MA E+PVD MPEIR+  +PKC   +K Y+ CVDRITA+GDG C+ QY ++LKCIDK S   + K LK
Sbjct:    1 MAGEDPVDVMPEIRKACEPKCVESFKLYRACVDRITAKGDGACDGQYFDYLKCIDKCSVPQLFKHLK 67
[Close]
BLAST of NO21G00120 vs. NCBI_GenBank
Match: XP_008867523.1 (hypothetical protein H310_04797 [Aphanomyces invadans] >ETW03294.1 hypothetical protein H310_04797 [Aphanomyces invadans])

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-14
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 0 
Query:    1 MADEEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEWLKCIDKHSAKAVLKALK 68
            MA E+PVD MPEIR+  +PKC   +K Y+ CVDRITA+G+G C+ QY ++LKCIDK S   + K LK
Sbjct:    1 MAGEDPVDVMPEIRKACEPKCVESFKVYRACVDRITAKGEGACDGQYFDYLKCIDKCSVPQIFKHLK 67
[Close]
BLAST of NO21G00120 vs. NCBI_GenBank
Match: GAX96087.1 (Hypothetical protein PINS_003944 [Pythium insidiosum])

HSP 1 Score: 82.0 bits (201), Expect = 7.700e-13
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 0 
Query:    1 MADEEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEWLKCIDKHSAKAVLKALK 68
            M+ EEPVD MPEIR+  +PKCA  +  YQ CVDRI A+G G C+ QY ++L CIDK S   ++K LK
Sbjct:    1 MSGEEPVDVMPEIRKACEPKCADYFTKYQACVDRIKAKGVGACDGQYFDFLHCIDKCSVPQIMKHLK 67
[Close]
BLAST of NO21G00120 vs. NCBI_GenBank
Match: XP_008907054.1 (hypothetical protein PPTG_13081 [Phytophthora parasitica INRA-310] >ETI44232.1 hypothetical protein F443_11079 [Phytophthora parasitica P1569] >ETK84210.1 hypothetical protein L915_10801 [Phytophthora parasitica] >ETL37680.1 hypothetical protein L916_10692 [Phytophthora parasitica] >ETL90834.1 hypothetical protein L917_10591 [Phytophthora parasitica] >ETM44089.1 hypothetical protein L914_10641 [Phytophthora parasitica] >ETN07769.1 hypothetical protein PPTG_13081 [Phytophthora parasitica INRA-310] >ETO72883.1 hypothetical protein F444_11154 [Phytophthora parasitica P1976] >ETP14056.1 hypothetical protein F441_10992 [Phytophthora parasitica CJ01A1] >ETP42106.1 hypothetical protein F442_10981 [Phytophthora parasitica P10297])

HSP 1 Score: 80.9 bits (198), Expect = 1.700e-12
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0 
Query:    1 MADEEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEWLKCIDKHSAKAVLKALK 68
            M+DEEPVD MP IR+  +PKC   +  YQ C+DR+ A+G G+C+ QY ++L CIDK S   ++K LK
Sbjct:    1 MSDEEPVDVMPAIRKACEPKCEQSFNAYQACLDRVKAKGVGSCDGQYFDFLHCIDKCSVPQIMKHLK 67
[Close]
BLAST of NO21G00120 vs. NCBI_GenBank
Match: POM76189.1 (hypothetical protein PHPALM_6601 [Phytophthora palmivora var. palmivora] >POM76274.1 hypothetical protein PHPALM_6502 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 80.5 bits (197), Expect = 2.200e-12
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0 
Query:    1 MADEEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEWLKCIDKHSAKAVLKALK 68
            M+DEEPVD MP IR+  +PKC   +  YQ C+DR+ A+G G C+ QY ++L CIDK S   ++K LK
Sbjct:    1 MSDEEPVDVMPAIRKACEPKCEQSFNAYQACLDRVKAKGVGACDGQYFDFLHCIDKCSVPQIMKHLK 67
[Close]
BLAST of NO21G00120 vs. NCBI_GenBank
Match: GAY01089.1 (Hypothetical protein PINS_008935 [Pythium insidiosum])

HSP 1 Score: 80.1 bits (196), Expect = 2.900e-12
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0 
Query:    4 EEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEWLKCIDKHSAKAVLKALK 68
            EEPVD MPEIR+  +PKCA  +  YQ CVDRI A+G G C+ QY ++L CIDK S   ++K LK
Sbjct:   60 EEPVDVMPEIRKACEPKCADYFTKYQACVDRIKAKGVGACDGQYFDFLHCIDKCSVPQIMKHLK 123
[Close]
BLAST of NO21G00120 vs. NCBI_GenBank
Match: XP_009033735.1 (hypothetical protein AURANDRAFT_69671 [Aureococcus anophagefferens] >EGB11359.1 hypothetical protein AURANDRAFT_69671 [Aureococcus anophagefferens])

HSP 1 Score: 79.7 bits (195), Expect = 3.800e-12
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 0 
Query:    1 MADEEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEWLKCIDKHSAKAVLKALK 68
            M+DEEPV  +P +R+  +PKC   +K Y  CVDRI A+G G CEP Y +WLKC+DK +   +++ LK
Sbjct:    1 MSDEEPVCPLPAMRKACEPKCTDAYKAYLSCVDRIEAKGGGDCEPYYFDWLKCLDKCAMPHIMQKLK 67
[Close]
BLAST of NO21G00120 vs. NCBI_GenBank
Match: KUF86078.1 (Cytochrome b-c1 complex subunit 6 [Phytophthora nicotianae])

HSP 1 Score: 74.3 bits (181), Expect = 1.600e-10
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0 
Query:    1 MADEEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEWLKCIDK 57
            M+DEEPVD MP IR+  +PKC   +  YQ C+DR+ A+G G+C+ QY ++L CIDK
Sbjct:    1 MSDEEPVDVMPAIRKACEPKCEQSFNAYQACLDRVKAKGVGSCDGQYFDFLHCIDK 56
[Close]
BLAST of NO21G00120 vs. NCBI_GenBank
Match: GBG32669.1 (Cytochrome b-c1 complex subunit 6 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 70.5 bits (171), Expect = 2.300e-9
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 0 
Query:    4 EEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEWLKCIDKHSAKAVLKALK 68
            ++PVD  PEI E  KP C   WK+Y+ C +R+ A+G+G C  QY ++  CID  +A  V K +K
Sbjct:    3 DDPVDPRPEIEEACKPGCQKYWKEYEACAERVQAKGEGHCSGQYFDFYHCIDACAAPKVFKTVK 66
[Close]
BLAST of NO21G00120 vs. NCBI_GenBank
Match: OSX75837.1 (hypothetical protein BU14_0218s0003 [Porphyra umbilicalis])

HSP 1 Score: 68.2 bits (165), Expect = 1.100e-8
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 0 
Query:    3 DEEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGD--GTCEPQYMEWLKCIDKHSAKAVLKALK 68
            D++PVDT P I E  KP C+  W DY+ C+ R+ A GD    C  QY+++ KC+D  +AK +   LK
Sbjct:    2 DDDPVDTKPTIEEACKPGCSQRWADYEACIKRVAASGDEEAHCTGQYLDFWKCVDVCAAKKIFAPLK 68
The following BLAST results are available for this feature:
BLAST of NO21G00120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009825435.18.200e-1558.21hypothetical protein H257_03157 [Aphanomyces astac... [more]
XP_008867523.11.100e-1456.72hypothetical protein H310_04797 [Aphanomyces invad... [more]
GAX96087.17.700e-1355.22Hypothetical protein PINS_003944 [Pythium insidios... [more]
XP_008907054.11.700e-1250.75hypothetical protein PPTG_13081 [Phytophthora para... [more]
POM76189.12.200e-1250.75hypothetical protein PHPALM_6601 [Phytophthora pal... [more]
GAY01089.12.900e-1256.25Hypothetical protein PINS_008935 [Pythium insidios... [more]
XP_009033735.13.800e-1249.25hypothetical protein AURANDRAFT_69671 [Aureococcus... [more]
KUF86078.11.600e-1053.57Cytochrome b-c1 complex subunit 6 [Phytophthora ni... [more]
GBG32669.12.300e-943.75Cytochrome b-c1 complex subunit 6 [Aurantiochytriu... [more]
OSX75837.11.100e-843.28hypothetical protein BU14_0218s0003 [Porphyra umbi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR093ncniR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR100ngnoR100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00120.1NO21G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613039gene_11033Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00120.1NO21G00120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00120 ID=NO21G00120|Name=NO21G00120|organism=Nannochloropsis oceanica|type=gene|length=770bp
ATGgtaagccctatactgtatatattcccttctccctttctccctccttc
cctctggtcatccctcacgcccattcccccccttcctcgttccacgcgat
catcagGCGGACGAAGAGCCTGTGGATACCATGCCAGAGATCCGGGAGAA
GGTCAAGCCCAAGTGTGCGGCAGACTGGAAAGACTATCAGgtacgggaag
ggggaagggagggatgcagcaagggaaaagcaagtggagggagccagtct
tcaaaacaagaaaagagactgacgtgtgcagcagcagcggcggcgtctgc
agccaccccatgacaaaggtagtaattgcagcaggcaggagaagccacgc
gtatctagagagagggctatcgtgggggatgcaaggaagaaggcggaaga
gcctatggaataatacatgctcagtacaagaaaaccttcctcctcactcc
ttcactccttccctcccttcctatctctcttcctccctgtcttcaatccg
gtatcagGGCTGCGTGGATCGTATCACCGCCCGAGGAGACGGGACGTGCG
AGCCCCAGTACATGGAGTGGCTCAAATGCATCGACAAGCACgtgcgtaca
cgccctccctccccctttccttccttggctccctttttcctttactcctt
tccaacctttctttggactatacagttcattttccggtctctgactttct
cctctcctccccccccccttcatttctcaaattacagAGCGCCAAGGCGG
TTCTGAAGGCACTAAAGTAA
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protein sequence of NO21G00120.1

>NO21G00120.1-protein ID=NO21G00120.1-protein|Name=NO21G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=68bp
MADEEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEW
LKCIDKHSAKAVLKALK*
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Synonyms
Publications