NO21G00090, NO21G00090 (gene) Nannochloropsis oceanica

Overview
NameNO21G00090
Unique NameNO21G00090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length848
Alignment locationchr21:27528..28375 +

Link to JBrowse

Properties
Property NameValue
DescriptionNudix hydrolase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:27528..28375 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
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BLAST of NO21G00090 vs. NCBI_GenBank
Match: XP_005855613.1 (nudix hydrolase [Nannochloropsis gaditana CCMP526] >EKU20744.1 nudix hydrolase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 75.5 bits (184), Expect = 1.300e-10
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0 
Query:   52 PSSLSQGPSLSSPHDVAFHPLKVAPFLGTPWRTEQTLEVVPVVSTAFVVCELHKVKAEDEA 113
            P++   GP +S      F PL++ PF G PWR+EQTLEVVPVVST+F VCE+HKVKAED A
Sbjct:   23 PTAQKGGPLVSGKD---FRPLELTPFTGKPWRSEQTLEVVPVVSTSFGVCEIHKVKAEDGA 80
The following BLAST results are available for this feature:
BLAST of NO21G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855613.11.300e-1060.66nudix hydrolase [Nannochloropsis gaditana CCMP526]... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR093ncniR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR100ngnoR100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007567NSK007567Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00090.1NO21G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|675044gene_11034Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00090.1NO21G00090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00090 ID=NO21G00090|Name=NO21G00090|organism=Nannochloropsis oceanica|type=gene|length=848bp
ATGCCTATGATTGCTCCTCAAGCCCATCATCACCACTCCGTGCCACGCCG
GGTTAGCACCACCAGCCCTCGCGCTCGTCTTCTCGTCCTCTTGGCCATCG
TAGCGGTCGTTGGGCTGGTCTACAAAGTGAGCATTAGTGCTTTACCGCCA
TTGCCGTCGTCCTTGTCTCAGgtaagtggcagtaataccgtctcgtcgtt
ctgcttctgcctcccactttgagattggccctcctctatttcaattccac
tccttaaaaacacaccctttcagGGGCCCTCTCTCAGCTCTCCGCACGAC
GTGGCCTTCCATCCCCTCAAGGTCGCGCCTTTCTTAGGAACACCGTGGCG
GACAGAGCAGgtatgtgtgtcggttcagcgggagaggtggccttggggta
caacataacagtattacatagatatatgcatttttgtgtgtacgccttgc
ttatttatccgtcctttgatccaacttacttctctgagaggcaaatcttt
atcgacatggccagagatcatatccattgctcatggcccacattcccccc
caccttcacaccttcacctgccaaaagACTTTGGAAGTAGTTCCCGTGGT
GTCCACGGCCTTTGTTGTCTGCGAGCTGCACAAAGTCAAGGCGGAGGATG
AGGCGgtacgtcggtgacagcgcggcaggaagggaagaagggaggggagc
aggcattggtttgaaagaaagcagagactgaaacctgaaggaacgtctct
ctgcatggcttgaggcggcatgaatagtacactgagacacctcccaccct
cagTCCTTTCCACTTACAGGAGCTGGAGGGTTAGCTGTGGTTCGTTGA
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protein sequence of NO21G00090.1

>NO21G00090.1-protein ID=NO21G00090.1-protein|Name=NO21G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MPMIAPQAHHHHSVPRRVSTTSPRARLLVLLAIVAVVGLVYKVSISALPP
LPSSLSQGPSLSSPHDVAFHPLKVAPFLGTPWRTEQTLEVVPVVSTAFVV
CELHKVKAEDEASFPLTGAGGLAVVR*
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Synonyms
Publications