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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr20 | genome | chr20:820952..825001 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G02590.2 vs.
Match: EWM20493.1 (prolyl 4-hydroxylase [Nannochloropsis gaditana]) HSP 1 Score: 187.2 bits (474), Expect = 1.000e-43 Identity = 92/122 (75.41%), Postives = 105/122 (86.07%), Query Frame = 0
Query: 247 MREEAVGLYRAGVFYPSFAFRGEERLDKKNVYNYELEGHEWDYAPSLLMYTRQMLLHLPPLLNSLALPLFFP----PSHPPSLLRLHLGAYMNKIAVSTGAGSHFLKHTDNNCGDSRKVNWV 365
MR+EA GL++AGVFYPSFA+RG+ERL+KKNV+N+EL+GHEWDYAPSLLMYTR++LLHLPPLLNSL+LPL P PS PPSLLRL Y NKIAVSTG GSHFL+HTDNN GDSRKV V
Sbjct: 1 MRQEASGLFQAGVFYPSFAYRGDERLEKKNVWNFELDGHEWDYAPSLLMYTREILLHLPPLLNSLSLPLPVPPSRSPSRPPSLLRLSPRGYANKIAVSTGGGSHFLRHTDNNNGDSRKVTLV 122
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G02590.2 ID=NO20G02590.2|Name=NO20G02590.2|organism=Nannochloropsis oceanica|type=mRNA|length=3633bp
TTTTCCAGCCTCCCCCACCCCCTCCCTGCTTTCAACCTGGCTGTGGCCAC
CCTTCCCCTTGACTTGACGCCTCTACATGCGTGTAGCAGCCACTAGCACA
GTGACAGGGACAGCCAACGCAGTGTCGACCATGTTGGGTCGCTCGCGTCC
GGTGATTGCTTTTAAATCCTCGACAAGAAGAAAAAGTAGCAGTGGTACGA
GCAGGAGCAGCACCAATAACAACACCAACAACAACAGCCGCAACAACAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAACAACCT
CAGCAGCAACGGTACCAGCAGCAGTAAGAGATGGAATTCTGGCCAGGCAT
TATCCTCCTCGTCCTTGCCCGGAAGTAGCCGCAGCAGCAGCAGCAGCAGT
GACAGCCGCCTGTCTTCCTCCATTCTTTCAGGGCCCACAACGAACAGTCT
TCGCTGGCGGCTTTCCTCGTCTTCCACCTCCTTTTTCTCCTCCTCTTCCT
TCCCCTCTTCACAAGAAGCATCGGCCGAGAAGGCCAGGAAGCTCTTCTTC
GAGCAGTTGGGCTTCGGCAACGTGGTGGAGGAACGGCTCAAGGCGGAGAA
GGAGGCAATCAAGCTTGGTCTCGGTCCTGACGGGCCTGGATTCGTCGTCT
TTCCCCGCTTCCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCACCTCCTCCTCCTCCTCCCTTTCTCC
CTCCCCCTCACCTTCCTCCTCCTCCTCCTCTGCCCAGGAGGAAGATCGGC
GTCTATGCCGAGACATGAGAGAAGAGGCGGTGGGCCTGTACAGGGCTGGG
GTCTTCTATCCCTCTTTTGCCTTTCGAGGGGAGGAAAGGTTGGACAAGAA
GAATGTCTACAATTATGAGCTCGAAGGTCATGAGTGGGACTATGCTCCCT
CCCTGCTCATGTATACACGGCAGATGCTCCTCCACCTCCCACCCCTCCTT
AACAGCCTCGCCCTCCCGCTCTTCTTTCCTCCGTCCCACCCTCCATCCCT
CCTCCGCCTGCACCTCGGGGCGTACATGAACAAGATTGCGGTCTCGACCG
GTGCTGGTTCTCATTTTCTGAAGCACACGGACAATAACTGTGGGGATTCA
CGAAAGGTTAATTGGGTGGGAGGGAGGGAGGAAGAGGAGACGAGGGAGGG
CGGGAGGTTTGGATGGAGGGAGTTGTGTTTGGAAAAGAGGCCTACTTACC
CTCCTTCTCTCCCTTCCTCCTCCCCCCCCCCTTCTTCTGGCAGCTTACTT
TGGTTTACTACATGAATCCCGACTGGCGTAAAGGCAACGGTGGCGAGCTT
CGGCTGTACCCCCGGCAAACGAAAGGAGGAAGGCCTGAAGGGGGGGAAGA
GAGGGAGACAAAGTGGGTGGATGTGGCCCCGGAGGGAGATACCTTGGTCA
TGTTTTTTAGCGACGAACTAGCTCATGAGGTGCTGCCGAACGAGAGCGAG
GAGGAAAGTGACCACCGTTGGACGTACACGCTGTGGCTGGTTGAGGCAGA
AAGGGAAGAGTTGGGGCGAAGGCAACGGCAAGGGGAAAATGAGAAATGAC
TGTACTCGTCGAGAGAGATGGAACTAGAAATAGATGCAGAGATGATGGGA
TAATATGTTCGCTAATTTGCTTTTGATGACAGTGAATTGTGGTCGTCTGT
TTTTCATTTATGATACTGGCTATATATTCGACGCGCCCAGGCCCCATCAT
CATATATGGGAGAAATGAGACGGATCTCAAAGGAAGGTGGTGCCCACCTA
TAAATTCTTATGCGAGGCCCAAAAGTTCTCTTTAGTGATTGCTGGGCTCC
ATGATTTATAGCATCCCTCTGACTTGTGTTATAAGTTGAACATCAGGGAG
CGTATTTGTTGCGTTTAGAGGGTTGGGAGGAGGTAGGGTGGTATTTTTTC
CCCAACTTACAATCACACACGTACACCCCTGAATCTCAATTGTTGCCTAT
ATAAACGTTCACATACAATTCCCAAGTGAATAGGCTATGAGCGGAAAGCA
TGACTTGTCGAGTATCAAACCAGCAGCCGTGCACCAACTATCACTCTGCC
GCGCCCCTTTTTCCACCGCGCTTCTCCATCCTCCCGGTTCAGGTGATGCT
TACCAAGGCCTATCTAAGACCCCGATGCACGCGCTGCGCACGACGTATTG
GTATATGACGGTGTGTGCGGTAGCGACATACGGGACAGCTAAGCACGTCA
TACAGCCGTCCGCCAGCTGTCGCTGCCGCCCGGTCATCAAGTCTTGCATA
CAGTCAAAAACTATATATTTTGTGCCAATTCTTGAATAATGCCCCAGCAA
GGTAAGAAAGTCCCTGTTCTCTATCGCCGACCAAACTTGATTTACCAGGT
AGCCCCTGAGATGAGCGAGATGCAAAGAAATATAGAAACAATTCAAGTAA
CATGGCCACAGTGGTGGGCTATAAGAAAGGCCACTGAGAGGACCAAAAGA
AACCAAATGGTAACGCGCATAGCAAACACTCAATTGTCGCTCACACGACT
CGGAGCAGTCACTCGTTACTCGGTCGGAGATGAGTGTCCAAATGTCTCCA
CGCCGGAGATACACGCACGAGCGGTCGGCCGACAAAAGGCCTATCCTATC
CCCATTGATTCGTATAAGTGCTCCTCATCGCCCTCTTGATTGTCATCTCT
CCCGTACAAGCAGGCACACGAAGCTGTCGATGTGAAAGGCGACAACTATC
GATAAAAAGGGCCAATGCATTGATATGAGCCGCTGGCCCACCCTTCCAAG
AGTCGTCTGCTCTCCAGAGAGGAAGGGGTTCTCTGCCTATTACCTGCCTC
TAATGCCCCCGTCCTCTTTCAGGTGTTACCCATCCTCGACCTTTCTTTCA
GCCTTTACCTTTCCTCCGCCACCCTCACAACGCATAAGCTCCCTGGGTTT
GCTCTCTCGATCCTATTTCCTACTATATTGTAGGCATATGATGAACTTGG
CCATATCAGTATTCTTAGGCTGGTCTATTGATCTATTTCTCTGCCTCCCT
CTCCCTCCCCCTCTACTTCTTACCTCTTCCCCTCCGTCGTCCCGTGGCGG
CCTCGGACGCCTCCATCTTGCGCGCAAGAGTGTCTAGATCATATGTCTAC
TTATATACATATATATAAGTGGAAGGGAAATGAGTGTCGCATCAGCACCT
TCTCGAAGACAGGCTCTCAGGTCGCAATTTCAGGGAAGTCTACGTTCAAG
GCGTATGGGCCCATCACCACATAGTATAATTATCACGGGCCCACGGCCCA
GTTTAAACCCTTGATTGCGCAGACCTGGGCAAAGGAAAAAAGTCCACGTG
AAGCAGAAAGGGATTGTGGTGGTGGTTATTGCAATCTCTGTTGGCCATGC
GTTGCATAGCATAGCATATACGTATGTAACATGACTTGAGAAAGATGACA
CGAATCCCCTGCAAGGAGTCGAGGCAAACGTCGGGAATACAGAGATTCAA
AAGCACTCTCGATACACTTGAGCGATATTTATCAATTTGACTCGATATCG
CACACAAAAGGTTATGGGGAGAGGCGTCTCTGATTAAGAGTGTAGCTGTA
TGAGGCGCTGGGGAGCCGTTTCGCCCCCTGCCG back to topprotein sequence of NO20G02590.2 >NO20G02590.2-protein ID=NO20G02590.2-protein|Name=NO20G02590.2|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MRVAATSTVTGTANAVSTMLGRSRPVIAFKSSTRRKSSSGTSRSSTNNNT
NNNSRNNNSSSSSSSSSNSNNNNNLSSNGTSSSKRWNSGQALSSSSLPGS
SRSSSSSSDSRLSSSILSGPTTNSLRWRLSSSSTSFFSSSSFPSSQEASA
EKARKLFFEQLGFGNVVEERLKAEKEAIKLGLGPDGPGFVVFPRFLSSSS
SSSSSSSSSSSSSSSSTSSSSSLSPSPSPSSSSSSAQEEDRRLCRDMREE
AVGLYRAGVFYPSFAFRGEERLDKKNVYNYELEGHEWDYAPSLLMYTRQM
LLHLPPLLNSLALPLFFPPSHPPSLLRLHLGAYMNKIAVSTGAGSHFLKH
TDNNCGDSRKVNWVGGREEEETREGGRFGWRELCLEKRPTYPPSLPSSSP
PPSSGSLLWFTT* back to topmRNA from alignment at chr20:820952..825001+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G02590.2 ID=NO20G02590.2|Name=NO20G02590.2|organism=Nannochloropsis oceanica|type=mRNA|length=4050bp|location=Sequence derived from alignment at chr20:820952..825001+ (Nannochloropsis oceanica)
TTTTCCAGCCTCCCCCACCCCCTCCCTGCTTTCAACCTGGCTGTGGCCAC
CCTTCCCCTTGACTTGACGCCTCTACATGCGTGTAGCAGCCACTAGCACA
GTGACAGGGACAGCCAACGCAGTGTCGACCATGTTGGGTCGCTCGCGTCC
GGTGATTGCTTTTAAATCCTCGACAAGAAGAAAAAGTAGCAGTGGTACGA
GCAGGAGCAGCACCAATAACAACACCAACAACAACAGCCGCAACAACAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAACAACCT
CAGCAGCAACGGTACCAGCAGCAGTAAGAGATGGAATTCTGGCCAGGCAT
TATCCTCCTCGTCCTTGCCCGGAAGTAGCCGCAGCAGCAGCAGCAGCAGT
GACAGCCGCCTGTCTTCCTCCATTCTTTCAGGGCCCACAACGAACAGTCT
TCGCTGGCGGCTTTCCTCGTCTTCCACCTCCTTTTTCTCCTCCTCTTCCT
TCCCCTCTTCACAAGAAGCATCGGCCGAGAAGGCCAGGAAGCTCTTCTTC
GAGCAGTTGGGCTTCGGCAACGTGGTGGAGGAACGGCTCAAGGCGGAGAA
GGAGGCAATCAAGGTAGGGAAGCAAGGGCGGAGAGGGAGGAAAGATAGAA
ACATGGGGAAGTGTTCGACGAGGAAGAGATAATAGAGACAGCGTAGCCTC
TTTATGGTCTCCTTTTCCTAAGTTAGTTGGTAGATACTTACACCCTGACA
AAATGATTTCCCCCCACCCTGCCTATCTTTGGCTCTTTAATTCACAGCTT
GGTCTCGGTCCTGACGGGCCTGGATTCGTCGTCTTTCCCCGCTTCCTCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCACCTCCTCCTCCTCCTCCCTTTCTCCCTCCCCCTCACCTTCC
TCCTCCTCCTCCTCTGCCCAGGAGGAAGATCGGCGTCTATGCCGAGACAT
GAGAGAAGAGGCGGTGGGCCTGTACAGGGCTGGGGTCTTCTATCCCTCTT
TTGCCTTTCGAGGGGAGGAAAGGTTGGACAAGAAGAATGTCTACAATTAT
GAGCTCGAAGGTACGCTTAAGTGGGCCTTTCCTCCCGTCCTCCCTCTCTG
CTTGTCAGTTTTCTTCTTCTTTACCTCTTTCGTTCCTGAACGTTGCGTCT
GCCTCCCTGTCTCTCTTTATTCTCCCGACCTTATACGCTTCTCTTTTCTC
ATCTTGTTTTTAATTTAACTAAAGGCGACGACTGCGCTCTTTCCACTCAA
ACCTACCTACCTACCTACCTACCTTCCTTCCTTCCTTCCTCAGGTCATGA
GTGGGACTATGCTCCCTCCCTGCTCATGTATACACGGCAGATGCTCCTCC
ACCTCCCACCCCTCCTTAACAGCCTCGCCCTCCCGCTCTTCTTTCCTCCG
TCCCACCCTCCATCCCTCCTCCGCCTGCACCTCGGGGCGTACATGAACAA
GATTGCGGTCTCGACCGGTGCTGGTTCTCATTTTCTGAAGCACACGGACA
ATAACTGTGGGGATTCACGAAAGGTTAATTGGGTGGGAGGGAGGGAGGAA
GAGGAGACGAGGGAGGGCGGGAGGTTTGGATGGAGGGAGTTGTGTTTGGA
AAAGAGGCCTACTTACCCTCCTTCTCTCCCTTCCTCCTCCCCCCCCCCTT
CTTCTGGCAGCTTACTTTGGTTTACTACATGAATCCCGACTGGCGTAAAG
GCAACGGTGGCGAGCTTCGGCTGTACCCCCGGCAAACGAAAGGAGGAAGG
CCTGAAGGGGGGGAAGAGAGGGAGACAAAGTGGGTGGATGTGGCCCCGGA
GGGAGATACCTTGGTCATGTTTTTTAGCGACGAACTAGCTCATGAGGTGC
TGCCGAACGAGAGCGAGGAGGAAAGTGACCACCGTTGGACGTACACGCTG
TGGCTGGTTGAGGCAGAAAGGGAAGAGTTGGGGCGAAGGCAACGGCAAGG
GGAAAATGAGAAATGACTGTACTCGTCGAGAGAGATGGAACTAGAAATAG
ATGCAGAGATGATGGGATAATATGTTCGCTAATTTGCTTTTGATGACAGT
GAATTGTGGTCGTCTGTTTTTCATTTATGATACTGGCTATATATTCGACG
CGCCCAGGCCCCATCATCATATATGGGAGAAATGAGACGGATCTCAAAGG
AAGGTGGTGCCCACCTATAAATTCTTATGCGAGGCCCAAAAGTTCTCTTT
AGTGATTGCTGGGCTCCATGATTTATAGCATCCCTCTGACTTGTGTTATA
AGTTGAACATCAGGGAGCGTATTTGTTGCGTTTAGAGGGTTGGGAGGAGG
TAGGGTGGTATTTTTTCCCCAACTTACAATCACACACGTACACCCCTGAA
TCTCAATTGTTGCCTATATAAACGTTCACATACAATTCCCAAGTGAATAG
GCTATGAGCGGAAAGCATGACTTGTCGAGTATCAAACCAGCAGCCGTGCA
CCAACTATCACTCTGCCGCGCCCCTTTTTCCACCGCGCTTCTCCATCCTC
CCGGTTCAGGTGATGCTTACCAAGGCCTATCTAAGACCCCGATGCACGCG
CTGCGCACGACGTATTGGTATATGACGGTGTGTGCGGTAGCGACATACGG
GACAGCTAAGCACGTCATACAGCCGTCCGCCAGCTGTCGCTGCCGCCCGG
TCATCAAGTCTTGCATACAGTCAAAAACTATATATTTTGTGCCAATTCTT
GAATAATGCCCCAGCAAGGTAAGAAAGTCCCTGTTCTCTATCGCCGACCA
AACTTGATTTACCAGGTAGCCCCTGAGATGAGCGAGATGCAAAGAAATAT
AGAAACAATTCAAGTAACATGGCCACAGTGGTGGGCTATAAGAAAGGCCA
CTGAGAGGACCAAAAGAAACCAAATGGTAACGCGCATAGCAAACACTCAA
TTGTCGCTCACACGACTCGGAGCAGTCACTCGTTACTCGGTCGGAGATGA
GTGTCCAAATGTCTCCACGCCGGAGATACACGCACGAGCGGTCGGCCGAC
AAAAGGCCTATCCTATCCCCATTGATTCGTATAAGTGCTCCTCATCGCCC
TCTTGATTGTCATCTCTCCCGTACAAGCAGGCACACGAAGCTGTCGATGT
GAAAGGCGACAACTATCGATAAAAAGGGCCAATGCATTGATATGAGCCGC
TGGCCCACCCTTCCAAGAGTCGTCTGCTCTCCAGAGAGGAAGGGGTTCTC
TGCCTATTACCTGCCTCTAATGCCCCCGTCCTCTTTCAGGTGTTACCCAT
CCTCGACCTTTCTTTCAGCCTTTACCTTTCCTCCGCCACCCTCACAACGC
ATAAGCTCCCTGGGTTTGCTCTCTCGATCCTATTTCCTACTATATTGTAG
GCATATGATGAACTTGGCCATATCAGTATTCTTAGGCTGGTCTATTGATC
TATTTCTCTGCCTCCCTCTCCCTCCCCCTCTACTTCTTACCTCTTCCCCT
CCGTCGTCCCGTGGCGGCCTCGGACGCCTCCATCTTGCGCGCAAGAGTGT
CTAGATCATATGTCTACTTATATACATATATATAAGTGGAAGGGAAATGA
GTGTCGCATCAGCACCTTCTCGAAGACAGGCTCTCAGGTCGCAATTTCAG
GGAAGTCTACGTTCAAGGCGTATGGGCCCATCACCACATAGTATAATTAT
CACGGGCCCACGGCCCAGTTTAAACCCTTGATTGCGCAGACCTGGGCAAA
GGAAAAAAGTCCACGTGAAGCAGAAAGGGATTGTGGTGGTGGTTATTGCA
ATCTCTGTTGGCCATGCGTTGCATAGCATAGCATATACGTATGTAACATG
ACTTGAGAAAGATGACACGAATCCCCTGCAAGGAGTCGAGGCAAACGTCG
GGAATACAGAGATTCAAAAGCACTCTCGATACACTTGAGCGATATTTATC
AATTTGACTCGATATCGCACACAAAAGGTTATGGGGAGAGGCGTCTCTGA
TTAAGAGTGTAGCTGTATGAGGCGCTGGGGAGCCGTTTCGCCCCCTGCCG
back to topCoding sequence (CDS) from alignment at chr20:820952..825001+ >NO20G02590.2 ID=NO20G02590.2|Name=NO20G02590.2|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr20:820952..825001+ (Nannochloropsis oceanica)
ATGCGTGTAGCAGCCACTAGCACAGTGACAGGGACAGCCAACGCAGTGTC
GACCATGTTGGGTCGCTCGCGTCCGGTGATTGCTTTTAAATCCTCGACAA
GAAGAAAAAGTAGCAGTGGTACGAGCAGGAGCAGCACCAATAACAACACC
AACAACAACAGCCGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACAGCAACAACAACAACAACCTCAGCAGCAACGGTACCAGCAGCAGTA
AGAGATGGAATTCTGGCCAGGCATTATCCTCCTCGTCCTTGCCCGGAAGT
AGCCGCAGCAGCAGCAGCAGCAGTGACAGCCGCCTGTCTTCCTCCATTCT
TTCAGGGCCCACAACGAACAGTCTTCGCTGGCGGCTTTCCTCGTCTTCCA
CCTCCTTTTTCTCCTCCTCTTCCTTCCCCTCTTCACAAGAAGCATCGGCC
GAGAAGGCCAGGAAGCTCTTCTTCGAGCAGTTGGGCTTCGGCAACGTGGT
GGAGGAACGGCTCAAGGCGGAGAAGGAGGCAATCAAGCTTGGTCTCGGTC
CTGACGGGCCTGGATTCGTCGTCTTTCCCCGCTTCCTCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAC
CTCCTCCTCCTCCTCCCTTTCTCCCTCCCCCTCACCTTCCTCCTCCTCCT
CCTCTGCCCAGGAGGAAGATCGGCGTCTATGCCGAGACATGAGAGAAGAG
GCGGTGGGCCTGTACAGGGCTGGGGTCTTCTATCCCTCTTTTGCCTTTCG
AGGGGAGGAAAGGTTGGACAAGAAGAATGTCTACAATTATGAGCTCGAAG
GTCATGAGTGGGACTATGCTCCCTCCCTGCTCATGTATACACGGCAGATG
CTCCTCCACCTCCCACCCCTCCTTAACAGCCTCGCCCTCCCGCTCTTCTT
TCCTCCGTCCCACCCTCCATCCCTCCTCCGCCTGCACCTCGGGGCGTACA
TGAACAAGATTGCGGTCTCGACCGGTGCTGGTTCTCATTTTCTGAAGCAC
ACGGACAATAACTGTGGGGATTCACGAAAGGTTAATTGGGTGGGAGGGAG
GGAGGAAGAGGAGACGAGGGAGGGCGGGAGGTTTGGATGGAGGGAGTTGT
GTTTGGAAAAGAGGCCTACTTACCCTCCTTCTCTCCCTTCCTCCTCCCCC
CCCCCTTCTTCTGGCAGCTTACTTTGGTTTACTACATGA back to top
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