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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr20 | genome | chr20:820952..825001 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G02590.1 vs.
Match: EWM20493.1 (prolyl 4-hydroxylase [Nannochloropsis gaditana]) HSP 1 Score: 297.7 bits (761), Expect = 6.000e-77 Identity = 149/213 (69.95%), Postives = 168/213 (78.87%), Query Frame = 0
Query: 247 MREEAVGLYRAGVFYPSFAFRGEERLDKKNVYNYELEGHEWDYAPSLLMYTRQMLLHLPPLLNSLALPLFFP----PSHPPSLLRLHLGAYMNKIAVSTGAGSHFLKHTDNNCGDSRKLTLVYYMNPDWRKGNGGELRLYPR-----------QTKGGRPEGGEERETKWVDVAPEGDTLVMFFSDELAHEVLPNESEEESDHRWTYTLWLVE 445
MR+EA GL++AGVFYPSFA+RG+ERL+KKNV+N+EL+GHEWDYAPSLLMYTR++LLHLPPLLNSL+LPL P PS PPSLLRL Y NKIAVSTG GSHFL+HTDNN GDSRK+TLVYY+NP+W GNGG+LRLYPR T GG + E VDV PEGDTLVMF S+EL HEVLPN SEEE DHRWTYTLWLVE
Sbjct: 1 MRQEASGLFQAGVFYPSFAYRGDERLEKKNVWNFELDGHEWDYAPSLLMYTREILLHLPPLLNSLSLPLPVPPSRSPSRPPSLLRLSPRGYANKIAVSTGGGSHFLRHTDNNNGDSRKVTLVYYLNPEWPSGNGGQLRLYPRSGAYGQEEGLKNTSGGEGTEADGGEEGHVDVWPEGDTLVMFLSEELEHEVLPNWSEEEKDHRWTYTLWLVE 213
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G02590.1 ID=NO20G02590.1|Name=NO20G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=3496bp TTTTCCAGCCTCCCCCACCCCCTCCCTGCTTTCAACCTGGCTGTGGCCAC CCTTCCCCTTGACTTGACGCCTCTACATGCGTGTAGCAGCCACTAGCACA GTGACAGGGACAGCCAACGCAGTGTCGACCATGTTGGGTCGCTCGCGTCC GGTGATTGCTTTTAAATCCTCGACAAGAAGAAAAAGTAGCAGTGGTACGA GCAGGAGCAGCACCAATAACAACACCAACAACAACAGCCGCAACAACAAC AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAACAACCT CAGCAGCAACGGTACCAGCAGCAGTAAGAGATGGAATTCTGGCCAGGCAT TATCCTCCTCGTCCTTGCCCGGAAGTAGCCGCAGCAGCAGCAGCAGCAGT GACAGCCGCCTGTCTTCCTCCATTCTTTCAGGGCCCACAACGAACAGTCT TCGCTGGCGGCTTTCCTCGTCTTCCACCTCCTTTTTCTCCTCCTCTTCCT TCCCCTCTTCACAAGAAGCATCGGCCGAGAAGGCCAGGAAGCTCTTCTTC GAGCAGTTGGGCTTCGGCAACGTGGTGGAGGAACGGCTCAAGGCGGAGAA GGAGGCAATCAAGCTTGGTCTCGGTCCTGACGGGCCTGGATTCGTCGTCT TTCCCCGCTTCCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC TCCTCCTCCTCCTCCTCCTCCTCCACCTCCTCCTCCTCCTCCCTTTCTCC CTCCCCCTCACCTTCCTCCTCCTCCTCCTCTGCCCAGGAGGAAGATCGGC GTCTATGCCGAGACATGAGAGAAGAGGCGGTGGGCCTGTACAGGGCTGGG GTCTTCTATCCCTCTTTTGCCTTTCGAGGGGAGGAAAGGTTGGACAAGAA GAATGTCTACAATTATGAGCTCGAAGGTCATGAGTGGGACTATGCTCCCT CCCTGCTCATGTATACACGGCAGATGCTCCTCCACCTCCCACCCCTCCTT AACAGCCTCGCCCTCCCGCTCTTCTTTCCTCCGTCCCACCCTCCATCCCT CCTCCGCCTGCACCTCGGGGCGTACATGAACAAGATTGCGGTCTCGACCG GTGCTGGTTCTCATTTTCTGAAGCACACGGACAATAACTGTGGGGATTCA CGAAAGCTTACTTTGGTTTACTACATGAATCCCGACTGGCGTAAAGGCAA CGGTGGCGAGCTTCGGCTGTACCCCCGGCAAACGAAAGGAGGAAGGCCTG AAGGGGGGGAAGAGAGGGAGACAAAGTGGGTGGATGTGGCCCCGGAGGGA GATACCTTGGTCATGTTTTTTAGCGACGAACTAGCTCATGAGGTGCTGCC GAACGAGAGCGAGGAGGAAAGTGACCACCGTTGGACGTACACGCTGTGGC TGGTTGAGGCAGAAAGGGAAGAGTTGGGGCGAAGGCAACGGCAAGGGGAA AATGAGAAATGACTGTACTCGTCGAGAGAGATGGAACTAGAAATAGATGC AGAGATGATGGGATAATATGTTCGCTAATTTGCTTTTGATGACAGTGAAT TGTGGTCGTCTGTTTTTCATTTATGATACTGGCTATATATTCGACGCGCC CAGGCCCCATCATCATATATGGGAGAAATGAGACGGATCTCAAAGGAAGG TGGTGCCCACCTATAAATTCTTATGCGAGGCCCAAAAGTTCTCTTTAGTG ATTGCTGGGCTCCATGATTTATAGCATCCCTCTGACTTGTGTTATAAGTT GAACATCAGGGAGCGTATTTGTTGCGTTTAGAGGGTTGGGAGGAGGTAGG GTGGTATTTTTTCCCCAACTTACAATCACACACGTACACCCCTGAATCTC AATTGTTGCCTATATAAACGTTCACATACAATTCCCAAGTGAATAGGCTA TGAGCGGAAAGCATGACTTGTCGAGTATCAAACCAGCAGCCGTGCACCAA CTATCACTCTGCCGCGCCCCTTTTTCCACCGCGCTTCTCCATCCTCCCGG TTCAGGTGATGCTTACCAAGGCCTATCTAAGACCCCGATGCACGCGCTGC GCACGACGTATTGGTATATGACGGTGTGTGCGGTAGCGACATACGGGACA GCTAAGCACGTCATACAGCCGTCCGCCAGCTGTCGCTGCCGCCCGGTCAT CAAGTCTTGCATACAGTCAAAAACTATATATTTTGTGCCAATTCTTGAAT AATGCCCCAGCAAGGTAAGAAAGTCCCTGTTCTCTATCGCCGACCAAACT TGATTTACCAGGTAGCCCCTGAGATGAGCGAGATGCAAAGAAATATAGAA ACAATTCAAGTAACATGGCCACAGTGGTGGGCTATAAGAAAGGCCACTGA GAGGACCAAAAGAAACCAAATGGTAACGCGCATAGCAAACACTCAATTGT CGCTCACACGACTCGGAGCAGTCACTCGTTACTCGGTCGGAGATGAGTGT CCAAATGTCTCCACGCCGGAGATACACGCACGAGCGGTCGGCCGACAAAA GGCCTATCCTATCCCCATTGATTCGTATAAGTGCTCCTCATCGCCCTCTT GATTGTCATCTCTCCCGTACAAGCAGGCACACGAAGCTGTCGATGTGAAA GGCGACAACTATCGATAAAAAGGGCCAATGCATTGATATGAGCCGCTGGC CCACCCTTCCAAGAGTCGTCTGCTCTCCAGAGAGGAAGGGGTTCTCTGCC TATTACCTGCCTCTAATGCCCCCGTCCTCTTTCAGGTGTTACCCATCCTC GACCTTTCTTTCAGCCTTTACCTTTCCTCCGCCACCCTCACAACGCATAA GCTCCCTGGGTTTGCTCTCTCGATCCTATTTCCTACTATATTGTAGGCAT ATGATGAACTTGGCCATATCAGTATTCTTAGGCTGGTCTATTGATCTATT TCTCTGCCTCCCTCTCCCTCCCCCTCTACTTCTTACCTCTTCCCCTCCGT CGTCCCGTGGCGGCCTCGGACGCCTCCATCTTGCGCGCAAGAGTGTCTAG ATCATATGTCTACTTATATACATATATATAAGTGGAAGGGAAATGAGTGT CGCATCAGCACCTTCTCGAAGACAGGCTCTCAGGTCGCAATTTCAGGGAA GTCTACGTTCAAGGCGTATGGGCCCATCACCACATAGTATAATTATCACG GGCCCACGGCCCAGTTTAAACCCTTGATTGCGCAGACCTGGGCAAAGGAA AAAAGTCCACGTGAAGCAGAAAGGGATTGTGGTGGTGGTTATTGCAATCT CTGTTGGCCATGCGTTGCATAGCATAGCATATACGTATGTAACATGACTT GAGAAAGATGACACGAATCCCCTGCAAGGAGTCGAGGCAAACGTCGGGAA TACAGAGATTCAAAAGCACTCTCGATACACTTGAGCGATATTTATCAATT TGACTCGATATCGCACACAAAAGGTTATGGGGAGAGGCGTCTCTGATTAA GAGTGTAGCTGTATGAGGCGCTGGGGAGCCGTTTCGCCCCCTGCCG back to topprotein sequence of NO20G02590.1 >NO20G02590.1-protein ID=NO20G02590.1-protein|Name=NO20G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp MRVAATSTVTGTANAVSTMLGRSRPVIAFKSSTRRKSSSGTSRSSTNNNT NNNSRNNNSSSSSSSSSNSNNNNNLSSNGTSSSKRWNSGQALSSSSLPGS SRSSSSSSDSRLSSSILSGPTTNSLRWRLSSSSTSFFSSSSFPSSQEASA EKARKLFFEQLGFGNVVEERLKAEKEAIKLGLGPDGPGFVVFPRFLSSSS SSSSSSSSSSSSSSSSTSSSSSLSPSPSPSSSSSSAQEEDRRLCRDMREE AVGLYRAGVFYPSFAFRGEERLDKKNVYNYELEGHEWDYAPSLLMYTRQM LLHLPPLLNSLALPLFFPPSHPPSLLRLHLGAYMNKIAVSTGAGSHFLKH TDNNCGDSRKLTLVYYMNPDWRKGNGGELRLYPRQTKGGRPEGGEERETK WVDVAPEGDTLVMFFSDELAHEVLPNESEEESDHRWTYTLWLVEAEREEL GRRQRQGENEK* back to topmRNA from alignment at chr20:820952..825001+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G02590.1 ID=NO20G02590.1|Name=NO20G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=4050bp|location=Sequence derived from alignment at chr20:820952..825001+ (Nannochloropsis oceanica) TTTTCCAGCCTCCCCCACCCCCTCCCTGCTTTCAACCTGGCTGTGGCCAC
CCTTCCCCTTGACTTGACGCCTCTACATGCGTGTAGCAGCCACTAGCACA
GTGACAGGGACAGCCAACGCAGTGTCGACCATGTTGGGTCGCTCGCGTCC
GGTGATTGCTTTTAAATCCTCGACAAGAAGAAAAAGTAGCAGTGGTACGA
GCAGGAGCAGCACCAATAACAACACCAACAACAACAGCCGCAACAACAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAACAACCT
CAGCAGCAACGGTACCAGCAGCAGTAAGAGATGGAATTCTGGCCAGGCAT
TATCCTCCTCGTCCTTGCCCGGAAGTAGCCGCAGCAGCAGCAGCAGCAGT
GACAGCCGCCTGTCTTCCTCCATTCTTTCAGGGCCCACAACGAACAGTCT
TCGCTGGCGGCTTTCCTCGTCTTCCACCTCCTTTTTCTCCTCCTCTTCCT
TCCCCTCTTCACAAGAAGCATCGGCCGAGAAGGCCAGGAAGCTCTTCTTC
GAGCAGTTGGGCTTCGGCAACGTGGTGGAGGAACGGCTCAAGGCGGAGAA
GGAGGCAATCAAGGTAGGGAAGCAAGGGCGGAGAGGGAGGAAAGATAGAA
ACATGGGGAAGTGTTCGACGAGGAAGAGATAATAGAGACAGCGTAGCCTC
TTTATGGTCTCCTTTTCCTAAGTTAGTTGGTAGATACTTACACCCTGACA
AAATGATTTCCCCCCACCCTGCCTATCTTTGGCTCTTTAATTCACAGCTT
GGTCTCGGTCCTGACGGGCCTGGATTCGTCGTCTTTCCCCGCTTCCTCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCACCTCCTCCTCCTCCTCCCTTTCTCCCTCCCCCTCACCTTCC
TCCTCCTCCTCCTCTGCCCAGGAGGAAGATCGGCGTCTATGCCGAGACAT
GAGAGAAGAGGCGGTGGGCCTGTACAGGGCTGGGGTCTTCTATCCCTCTT
TTGCCTTTCGAGGGGAGGAAAGGTTGGACAAGAAGAATGTCTACAATTAT
GAGCTCGAAGGTACGCTTAAGTGGGCCTTTCCTCCCGTCCTCCCTCTCTG
CTTGTCAGTTTTCTTCTTCTTTACCTCTTTCGTTCCTGAACGTTGCGTCT
GCCTCCCTGTCTCTCTTTATTCTCCCGACCTTATACGCTTCTCTTTTCTC
ATCTTGTTTTTAATTTAACTAAAGGCGACGACTGCGCTCTTTCCACTCAA
ACCTACCTACCTACCTACCTACCTTCCTTCCTTCCTTCCTCAGGTCATGA
GTGGGACTATGCTCCCTCCCTGCTCATGTATACACGGCAGATGCTCCTCC
ACCTCCCACCCCTCCTTAACAGCCTCGCCCTCCCGCTCTTCTTTCCTCCG
TCCCACCCTCCATCCCTCCTCCGCCTGCACCTCGGGGCGTACATGAACAA
GATTGCGGTCTCGACCGGTGCTGGTTCTCATTTTCTGAAGCACACGGACA
ATAACTGTGGGGATTCACGAAAGGTTAATTGGGTGGGAGGGAGGGAGGAA
GAGGAGACGAGGGAGGGCGGGAGGTTTGGATGGAGGGAGTTGTGTTTGGA
AAAGAGGCCTACTTACCCTCCTTCTCTCCCTTCCTCCTCCCCCCCCCCTT
CTTCTGGCAGCTTACTTTGGTTTACTACATGAATCCCGACTGGCGTAAAG
GCAACGGTGGCGAGCTTCGGCTGTACCCCCGGCAAACGAAAGGAGGAAGG
CCTGAAGGGGGGGAAGAGAGGGAGACAAAGTGGGTGGATGTGGCCCCGGA
GGGAGATACCTTGGTCATGTTTTTTAGCGACGAACTAGCTCATGAGGTGC
TGCCGAACGAGAGCGAGGAGGAAAGTGACCACCGTTGGACGTACACGCTG
TGGCTGGTTGAGGCAGAAAGGGAAGAGTTGGGGCGAAGGCAACGGCAAGG
GGAAAATGAGAAATGACTGTACTCGTCGAGAGAGATGGAACTAGAAATAG
ATGCAGAGATGATGGGATAATATGTTCGCTAATTTGCTTTTGATGACAGT
GAATTGTGGTCGTCTGTTTTTCATTTATGATACTGGCTATATATTCGACG
CGCCCAGGCCCCATCATCATATATGGGAGAAATGAGACGGATCTCAAAGG
AAGGTGGTGCCCACCTATAAATTCTTATGCGAGGCCCAAAAGTTCTCTTT
AGTGATTGCTGGGCTCCATGATTTATAGCATCCCTCTGACTTGTGTTATA
AGTTGAACATCAGGGAGCGTATTTGTTGCGTTTAGAGGGTTGGGAGGAGG
TAGGGTGGTATTTTTTCCCCAACTTACAATCACACACGTACACCCCTGAA
TCTCAATTGTTGCCTATATAAACGTTCACATACAATTCCCAAGTGAATAG
GCTATGAGCGGAAAGCATGACTTGTCGAGTATCAAACCAGCAGCCGTGCA
CCAACTATCACTCTGCCGCGCCCCTTTTTCCACCGCGCTTCTCCATCCTC
CCGGTTCAGGTGATGCTTACCAAGGCCTATCTAAGACCCCGATGCACGCG
CTGCGCACGACGTATTGGTATATGACGGTGTGTGCGGTAGCGACATACGG
GACAGCTAAGCACGTCATACAGCCGTCCGCCAGCTGTCGCTGCCGCCCGG
TCATCAAGTCTTGCATACAGTCAAAAACTATATATTTTGTGCCAATTCTT
GAATAATGCCCCAGCAAGGTAAGAAAGTCCCTGTTCTCTATCGCCGACCA
AACTTGATTTACCAGGTAGCCCCTGAGATGAGCGAGATGCAAAGAAATAT
AGAAACAATTCAAGTAACATGGCCACAGTGGTGGGCTATAAGAAAGGCCA
CTGAGAGGACCAAAAGAAACCAAATGGTAACGCGCATAGCAAACACTCAA
TTGTCGCTCACACGACTCGGAGCAGTCACTCGTTACTCGGTCGGAGATGA
GTGTCCAAATGTCTCCACGCCGGAGATACACGCACGAGCGGTCGGCCGAC
AAAAGGCCTATCCTATCCCCATTGATTCGTATAAGTGCTCCTCATCGCCC
TCTTGATTGTCATCTCTCCCGTACAAGCAGGCACACGAAGCTGTCGATGT
GAAAGGCGACAACTATCGATAAAAAGGGCCAATGCATTGATATGAGCCGC
TGGCCCACCCTTCCAAGAGTCGTCTGCTCTCCAGAGAGGAAGGGGTTCTC
TGCCTATTACCTGCCTCTAATGCCCCCGTCCTCTTTCAGGTGTTACCCAT
CCTCGACCTTTCTTTCAGCCTTTACCTTTCCTCCGCCACCCTCACAACGC
ATAAGCTCCCTGGGTTTGCTCTCTCGATCCTATTTCCTACTATATTGTAG
GCATATGATGAACTTGGCCATATCAGTATTCTTAGGCTGGTCTATTGATC
TATTTCTCTGCCTCCCTCTCCCTCCCCCTCTACTTCTTACCTCTTCCCCT
CCGTCGTCCCGTGGCGGCCTCGGACGCCTCCATCTTGCGCGCAAGAGTGT
CTAGATCATATGTCTACTTATATACATATATATAAGTGGAAGGGAAATGA
GTGTCGCATCAGCACCTTCTCGAAGACAGGCTCTCAGGTCGCAATTTCAG
GGAAGTCTACGTTCAAGGCGTATGGGCCCATCACCACATAGTATAATTAT
CACGGGCCCACGGCCCAGTTTAAACCCTTGATTGCGCAGACCTGGGCAAA
GGAAAAAAGTCCACGTGAAGCAGAAAGGGATTGTGGTGGTGGTTATTGCA
ATCTCTGTTGGCCATGCGTTGCATAGCATAGCATATACGTATGTAACATG
ACTTGAGAAAGATGACACGAATCCCCTGCAAGGAGTCGAGGCAAACGTCG
GGAATACAGAGATTCAAAAGCACTCTCGATACACTTGAGCGATATTTATC
AATTTGACTCGATATCGCACACAAAAGGTTATGGGGAGAGGCGTCTCTGA
TTAAGAGTGTAGCTGTATGAGGCGCTGGGGAGCCGTTTCGCCCCCTGCCG
back to topCoding sequence (CDS) from alignment at chr20:820952..825001+ >NO20G02590.1 ID=NO20G02590.1|Name=NO20G02590.1|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at chr20:820952..825001+ (Nannochloropsis oceanica) ATGCGTGTAGCAGCCACTAGCACAGTGACAGGGACAGCCAACGCAGTGTC GACCATGTTGGGTCGCTCGCGTCCGGTGATTGCTTTTAAATCCTCGACAA GAAGAAAAAGTAGCAGTGGTACGAGCAGGAGCAGCACCAATAACAACACC AACAACAACAGCCGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAG CAACAGCAACAACAACAACAACCTCAGCAGCAACGGTACCAGCAGCAGTA AGAGATGGAATTCTGGCCAGGCATTATCCTCCTCGTCCTTGCCCGGAAGT AGCCGCAGCAGCAGCAGCAGCAGTGACAGCCGCCTGTCTTCCTCCATTCT TTCAGGGCCCACAACGAACAGTCTTCGCTGGCGGCTTTCCTCGTCTTCCA CCTCCTTTTTCTCCTCCTCTTCCTTCCCCTCTTCACAAGAAGCATCGGCC GAGAAGGCCAGGAAGCTCTTCTTCGAGCAGTTGGGCTTCGGCAACGTGGT GGAGGAACGGCTCAAGGCGGAGAAGGAGGCAATCAAGCTTGGTCTCGGTC CTGACGGGCCTGGATTCGTCGTCTTTCCCCGCTTCCTCTCCTCCTCCTCC TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAC CTCCTCCTCCTCCTCCCTTTCTCCCTCCCCCTCACCTTCCTCCTCCTCCT CCTCTGCCCAGGAGGAAGATCGGCGTCTATGCCGAGACATGAGAGAAGAG GCGGTGGGCCTGTACAGGGCTGGGGTCTTCTATCCCTCTTTTGCCTTTCG AGGGGAGGAAAGGTTGGACAAGAAGAATGTCTACAATTATGAGCTCGAAG GTCATGAGTGGGACTATGCTCCCTCCCTGCTCATGTATACACGGCAGATG CTCCTCCACCTCCCACCCCTCCTTAACAGCCTCGCCCTCCCGCTCTTCTT TCCTCCGTCCCACCCTCCATCCCTCCTCCGCCTGCACCTCGGGGCGTACA TGAACAAGATTGCGGTCTCGACCGGTGCTGGTTCTCATTTTCTGAAGCAC ACGGACAATAACTGTGGGGATTCACGAAAGCTTACTTTGGTTTACTACAT GAATCCCGACTGGCGTAAAGGCAACGGTGGCGAGCTTCGGCTGTACCCCC GGCAAACGAAAGGAGGAAGGCCTGAAGGGGGGGAAGAGAGGGAGACAAAG TGGGTGGATGTGGCCCCGGAGGGAGATACCTTGGTCATGTTTTTTAGCGA CGAACTAGCTCATGAGGTGCTGCCGAACGAGAGCGAGGAGGAAAGTGACC ACCGTTGGACGTACACGCTGTGGCTGGTTGAGGCAGAAAGGGAAGAGTTG GGGCGAAGGCAACGGCAAGGGGAAAATGAGAAATGA back to top
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