NO20G02570.1, NO20G02570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02570.1
Unique NameNO20G02570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1608
Alignment locationchr20:813727..817325 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:813727..817325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02570.1 vs.
Match: EWM20492.1 (elongation factor ts, partial [Nannochloropsis gaditana])

HSP 1 Score: 241.9 bits (616), Expect = 3.400e-60
Identity = 135/167 (80.84%), Postives = 145/167 (86.83%), Query Frame = 0 
Query:   57 MRVSISLLCAAAVLALQQVTAFMPPAAFPSSSRPT-TALRMAAEAVEVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKG 223
            MRV+ SLLCAA  L LQQ TAF+ PA+FPSS   + T LRMAAEAVEVPM+LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLV+LAV+GTRGVAVEVNSETDFVARNADFQ FVAGA KTAL +T GA  GV  ME  AL+A +G
Sbjct:    1 MRVTTSLLCAAVGLVLQQATAFLSPASFPSSKPASATVLRMAAEAVEVPMDLIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGLTQGAKPGVSDMEHAALIAVRG 167
The following BLAST results are available for this feature:
BLAST of NO20G02570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20492.13.400e-6080.84elongation factor ts, partial [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02570NO20G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02570.1NO20G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02570.1.cds1NO20G02570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02570.1.cds2NO20G02570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02570.1.cds3NO20G02570.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02570.1.cds4NO20G02570.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02570.1.cds5NO20G02570.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02570.1.cds6NO20G02570.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02570.1.cds7NO20G02570.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02570.1.cds8NO20G02570.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02570.1 ID=NO20G02570.1|Name=NO20G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1608bp
AAAAGACACTCCAGGCGGCCGTGTGTAAGTCACTAACCCAAAATCGACTA
CACTGAAAAGGAAAGCTTTCTAAAGATTCAAAGTTTATGCATTCTTGCTT
TATTCTCCCAAATTTCCAAGACGACCAAGCGTCCCCATTGCTTCGCTGCC
ACACACGAGCACGGGTTTCAGCAGATCTGGAACTTGAACACTCCTTGCCT
GACTTACGCAGCTGCCACATACTCAGCCCATCCCATCCGCATGCGGGCAT
ATAATAGGAACACTCCCACAGTGGACATAGTGTAATGCTGCGAGGTCTTG
TCCAGCAGCGCTTCCCTTTACACCTAACCATCATCATAATCCTGCCCCCC
GCCATGCTGTGGCTCGTCAGCACAGGCGCGTCCGGAATTAATATCCCACG
TCTCATTTTGCTCAAAACCCACGTCCCTCTCACAGCCAACCCCAGCAGCA
AAATGCGTGTGTCCATTAGCCTTCTGTGCGCCGCTGCGGTGCTTGCCCTT
CAGCAGGTGACGGCTTTCATGCCCCCTGCTGCCTTCCCTTCCTCCTCCCG
CCCGACAACGGCCCTGCGTATGGCGGCCGAGGCGGTGGAAGTGCCCATGG
AGCTGATCAAGAAGCTGCGAGGCATGTCAGGCGCACCCATTATGGACTGC
AAAAAGGCATTGGCGGAGGAGAAGCTAGATGTGGAGGCGGCCTTCGACTG
GCTGCGCAAGAAGGGGCAAGCCACCATCGCCAAGCGCGACCGAGCCACGA
AGGAGGGTTTGGTCTCTCTGGCAGTAGAGGGCACCCGGGGTGTGGCTGTC
GAGGTCAATTCCGAGACTGATTTTGTTGCACGTAACGCTGATTTTCAAGC
CTTCGTAGCGGGGGCGACCAAGACGGCGCTGAGCATGACAGCCGGGGCCG
CGGCAGGGGTTGGGAGCATGGAGAGGGATGCTCTGATGGCGGCCAAGGGC
CCCACCGGCGACAGCATCGAGACGGAGCTCGCAAACCTGGTGGCCAAAAT
CCGCGAGGGCATGACGCTTCGGCGCGCTTCGCAGCTGGTGGTGGACCAGG
GGGTAGTGGCTTGTTACGTGCACAACGCCGCAGGCCCGCTCATGGGCCAG
GCCGGTGCGCTGGTGGGTATCAAGACAGACGCCACGGGGGAGAAGCTCGA
GCAAGTGGAGGCCATGGCCAAGCGTCTGGCGATGCACGTGGTGGCTGCTA
ACCCGCTCTACCTCAATAGTGCCGCCGTTCCGGCCGAGGTGGTGGAGCGG
GAGAAGGCTGTGGCCCGCCAGACGGCCATTGACTCGGGCAAAAAGCCCGA
GGTGGTAGAGAAAATGACCGAGGGCCGCCTGCGCAAGTACTTCGAGGAGG
TGTGCTTAGTGCAGCAGAACCATATGCTCGAGGAGGGTAACCCCAAGATC
GCGGACCTCTTCACCAAGACGGCGGCGGAGATGGGCGTCACGCTCGAGCT
CACTTCCTTCCTCAAGTACCGCACAGGGGAGGAATAAACAGAGGAAGGAG
GGAAAGAGGGAGGGACGGAGGAAGGGAGGGAGGGAGGGAGGGAGGACGAA
AGAGGAGCACAGGGAGGTTGAAGGAGGGAGGGAACAGCAGTGATTGTTTT
TACAGCAA
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protein sequence of NO20G02570.1

>NO20G02570.1-protein ID=NO20G02570.1-protein|Name=NO20G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MLRGLVQQRFPLHLTIIIILPPAMLWLVSTGASGINIPRLILLKTHVPLT
ANPSSKMRVSISLLCAAAVLALQQVTAFMPPAAFPSSSRPTTALRMAAEA
VEVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAK
RDRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALS
MTAGAAAGVGSMERDALMAAKGPTGDSIETELANLVAKIREGMTLRRASQ
LVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAM
HVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLR
KYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGEE
*
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mRNA from alignment at chr20:813727..817325+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02570.1 ID=NO20G02570.1|Name=NO20G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=3599bp|location=Sequence derived from alignment at chr20:813727..817325+ (Nannochloropsis oceanica)
AAAAGACACTCCAGGCGGCCGTGTGTAAGTCACTAACCCAAAATCGACTA
CACTGAAAAGGAAAGCTTTCTAAAGATTCAAAGTTTATGCATTCTTGCTT
TATTCTCCCAAATTTCCAAGACGACCAAGCGTCCCCATTGCTTCGCTGCC
ACACACGAGCACGGGTTTCAGCAGATCTGGAACTTGAACACTCCTTGCCT
GACTTACGCAGCTGCCACATACTCAGCCCATCCCATCCGCATGCGGGCAT
ATAATAGGAACACTCCCACAGTGGACATAGTGTAATGCTGCGAGGTCTTG
TCCAGCAGCGCTTCCCTTTACACCTAACCATCATCATAATCCTGCCCCCC
GCCATGCTGTGGCTCGTCAGCACAGGCGCGTCCGGAATTAATATCCCACG
TCTCATTTTGCTCAAAACCCACGTCCCTCTCACAGCCAACCCCAGCAGCA
AAATGCGTGTGTCCATTAGCCTTCTGTGCGCCGCTGCGGTGCTTGCCCTT
CAGCAGGTGACGGCTTTCATGCCCCCTGCTGCCTTCCCTTCCTCCTCCCG
CCCGACAACGGCCCTGCGTATGGCGGCCGAGGCGGTGGAAGTGCCCATGG
AGCTGATCAAGAAGCTGCGAGGCATGTCAGGCGCACCCATTATGGACTGC
AAAAAGGCATTGGCGGAGGAGAAGCTAGGTACGAAGAGGAGGGTGGGAAG
GGAGGGAGCGAGCCAGGAATGGAGGGACGACAGGAAGGATTGGGGTGTAT
GCTGGAACTGAGGATGCCACGCTCTTTGCCACCGAGATTGTAGTTTATTC
ACCCTTCTTTGTTTTTGGAATCGACCTGTATCTTCTCAACTGCTCTTCTC
TTCTCTTTCCCTCCCTTTCGCTCTTCTTCATCTTGCCCAGATGTGGAGGC
GGCCTTCGACTGGCTGCGCAAGAAGGGGCAAGCCACCATCGCCAAGCGCG
ACCGAGCCACGAAGGAGGGTTTGGTCTCTCTGGCAGTAGAGGGCACCCGG
GGTGTGGCTGTCGAGGTACGCTTCTAGCGATCCAACCCTTCCCTCCCCCT
CCCATCCTCCATCCTCCCCTTCATGTCCATTGCTTCTTTTTCATTCAACC
CAAACCTCACCCTCCCTCCATCCCTCCCTCCTTCTCTCCCTAGGTCAATT
CCGAGACTGATTTTGTTGCACGTAACGCTGATTTTCAAGCCTTCGTAGCG
GGGGCGACCAAGACGGCGCTGAGCATGACAGCCGGGGCCGCGGCAGGGGT
TGGGAGCATGGAGAGGGATGCTCTGATGGCGGTAGGGAAGGAAGGAAGGA
AGGAGGGAATGAGGGAGGGAGGAAGGGATGGTCTATTTGCACTCGTAGTG
GGAGAGAGAGGGGAGGCATTGGGGATAGTGGTGTTGTTGAGGATTACAAA
CCATAAGGATCGATAACTGACTCTGTAATGAAGAGCAAACAGAACGTAAT
GCTTTGTAATGAAACAACCAGCGAAAGGCCACCATCACTTCTCACACACA
ACGAGGAAGGGAGGAAAGAAGTATTGGAGAGAGGGGTGGGCGAAGGAAGC
GGAGGGCGTCTAGGCAAAGAAATAGTCGAGGAAGGTACTCCCAAGTGCAC
TTATCTTCACACGCCTCTCCCCCCCTCCTTCCCTCCCTCCCTCCCACCCT
CCCTCAGGCCAAGGGCCCCACCGGCGACAGCATCGAGACGGAGCTCGCAA
ACCTGGTGGCCAAAATCCGCGAGGGCATGACGCTTCGGCGCGCTTCGCAG
CTGGTGGTGGACCAGGGGGTAGTGGCTTGTTACGTGCACAACGCCGCAGG
CCCGCTCATGGGCCAGGTGCGTTAATGCTCGCCCGCCCTCTTCCCCTCCC
TCCCTCCTGCCCTCCTTCTCCTCGCTTGCATCTCATTTATCGAAGAAGAG
CGTGGATCTCAATCCGCTCTCCCTCTCCCTCCCTCCCTCCCTCTCTTCTT
TGTGTCTCATTATTTCTCCTTCCCTCGAGCCGGTGCTGTGGTGGCCCCGA
GAAGAGACTCCGCAGTGACACGTTTGGACCCGCTGGCTCAAGCAGTGATA
GTCATCCATCAAAACGTCTATCTCTCTCAAACTCTCCTTTCCCTCCCTCC
CTCCCTCCTTCCCTCTCTCCCTCCCTCCCTCAGGCCGGTGCGCTGGTGGG
TATCAAGACAGACGCCACGGGGGAGAAGCTCGAGCAAGTGGAGGCCATGG
CCAAGCGTCTGGCGATGCACGTGGTGGCTGCTAACCCGCTCTACCTCAAT
AGGTGGGTGTTTCGTCGTCCCTTCCTCCCTCCCTCCCTCCCTCCTTCCTT
CCTTCCCTCCCTCCCTCCCTCCCTCTATCTCCCTCGAGGTTCCCTTCGTC
CCTCAATTTTCTTCTTCCAGTGCTGATTGGTGATCTTGCTTCTCTCCTAG
AGACTTTTGGAGAGCTCGCAGGCTTGTCTCCTTCGAACCCTCCCTCCCTC
CCTCCTTCTTTCCACCCCTTGTGCCTCCTTCTAACCCTCCCTCCCTCCCT
CCCTCCCTCCTTCCCTCCCCCCTCCTTCCCTACCTTCCTCCTCCTTCTAG
TGCCGCCGTTCCGGCCGAGGTGGTGGAGCGGGAGAAGGCTGTGGCCCGCC
AGACGGCCATTGACTCGGGCAAAAAGCCCGAGGTGGTAGAGAAAATGACC
GAGGGTAAGAGAAAGGCAACATGCCGTCCCTCCTTCCCTTCCTTCCTTCC
TTCCCTCCCTTCCTTTCTTTCTGTGGTGTCTGACCGACTGCATTGGACTC
TGACTAGCCGGAAGTATTGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TTCTTGGTCCTTCCGGTGAAAGAAATGACGACTCCCTTCCCTGCTTCTCG
TTTGTTTCGTTCGGTTTCGTCCTCTCCTCACTCCCCCCCCTGTCCCTCCC
CCCACGCTCTAGGCCGCCTGCGCAAGTACTTCGAGGAGGTGTGCTTAGTG
CAGCAGAACCATATGCTCGAGGAGGGTAACCCCAAGGTGCGCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCTTCCC
CTCCTCCCTTTCTTTGTCCCTCCTTGTCTTCCCCTCTCCTCTTGCTGCTG
CTGCGGATGCTGCTGTTGTTGCTTCTTCTTTTTTTGTGCTTGCCCTCCCA
AATCCTTTTTCTCGTCTGTCTTTCTTGACTAACGACAGCTGCAGCTTCCT
CCATTTCTCTTCTCTTTCTCTTTCCATTCCTCCTTCAGAAGATTGGCCGA
CCTCTCCCTCTCGTACTCGCTCGCTCCCTCCCTCCACACACACTCACCCT
CCCTTCCTCCCTCTCTCCACACACTCTCACCCTCCCTTCCTCCCTCCCTC
TCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGATCGCGGACCTC
TTCACCAAGACGGCGGCGGAGATGGGCGTCACGCTCGAGCTCACTTCCTT
CCTCAAGTACCGCACAGGGGAGGAATAAACAGAGGAAGGAGGGAAAGAGG
GAGGGACGGAGGAAGGGAGGGAGGGAGGGAGGGAGGACGAAAGAGGAGCA
CAGGGAGGTTGAAGGAGGGAGGGAACAGCAGTGATTGTTTTTACAGCAA
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Coding sequence (CDS) from alignment at chr20:813727..817325+

>NO20G02570.1 ID=NO20G02570.1|Name=NO20G02570.1|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at chr20:813727..817325+ (Nannochloropsis oceanica)
ATGCTGCGAGGTCTTGTCCAGCAGCGCTTCCCTTTACACCTAACCATCAT
CATAATCCTGCCCCCCGCCATGCTGTGGCTCGTCAGCACAGGCGCGTCCG
GAATTAATATCCCACGTCTCATTTTGCTCAAAACCCACGTCCCTCTCACA
GCCAACCCCAGCAGCAAAATGCGTGTGTCCATTAGCCTTCTGTGCGCCGC
TGCGGTGCTTGCCCTTCAGCAGGTGACGGCTTTCATGCCCCCTGCTGCCT
TCCCTTCCTCCTCCCGCCCGACAACGGCCCTGCGTATGGCGGCCGAGGCG
GTGGAAGTGCCCATGGAGCTGATCAAGAAGCTGCGAGGCATGTCAGGCGC
ACCCATTATGGACTGCAAAAAGGCATTGGCGGAGGAGAAGCTAGATGTGG
AGGCGGCCTTCGACTGGCTGCGCAAGAAGGGGCAAGCCACCATCGCCAAG
CGCGACCGAGCCACGAAGGAGGGTTTGGTCTCTCTGGCAGTAGAGGGCAC
CCGGGGTGTGGCTGTCGAGGTCAATTCCGAGACTGATTTTGTTGCACGTA
ACGCTGATTTTCAAGCCTTCGTAGCGGGGGCGACCAAGACGGCGCTGAGC
ATGACAGCCGGGGCCGCGGCAGGGGTTGGGAGCATGGAGAGGGATGCTCT
GATGGCGGCCAAGGGCCCCACCGGCGACAGCATCGAGACGGAGCTCGCAA
ACCTGGTGGCCAAAATCCGCGAGGGCATGACGCTTCGGCGCGCTTCGCAG
CTGGTGGTGGACCAGGGGGTAGTGGCTTGTTACGTGCACAACGCCGCAGG
CCCGCTCATGGGCCAGGCCGGTGCGCTGGTGGGTATCAAGACAGACGCCA
CGGGGGAGAAGCTCGAGCAAGTGGAGGCCATGGCCAAGCGTCTGGCGATG
CACGTGGTGGCTGCTAACCCGCTCTACCTCAATAGTGCCGCCGTTCCGGC
CGAGGTGGTGGAGCGGGAGAAGGCTGTGGCCCGCCAGACGGCCATTGACT
CGGGCAAAAAGCCCGAGGTGGTAGAGAAAATGACCGAGGGCCGCCTGCGC
AAGTACTTCGAGGAGGTGTGCTTAGTGCAGCAGAACCATATGCTCGAGGA
GGGTAACCCCAAGATCGCGGACCTCTTCACCAAGACGGCGGCGGAGATGG
GCGTCACGCTCGAGCTCACTTCCTTCCTCAAGTACCGCACAGGGGAGGAA
TAA
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Synonyms
Publications