NO20G02570, NO20G02570 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G02570 vs. NCBI_GenBank
Match: EWM28678.1 (elongation factor ts [Nannochloropsis gaditana]) HSP 1 Score: 250.8 bits (639), Expect = 7.400e-63 Identity = 147/310 (47.42%), Postives = 199/310 (64.19%), Query Frame = 0 Query: 104 PMELIKKLRGMSGAPIMDCKKALAEEKL--DVEAAFDWLRKKGQATIAKRDRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFV---AGA---TKTALSMTAGAAAGVGSMERD---ALMAAKGPTGDSIETELANLVAKIREGMTLRRASQLVVD---QGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400 P+ L+K+LR SGAPI DCKKAL E + D+ AF+WLRKKGQAT+ K +RA EGLV +AVEG GV VEVNSETDFVARNADFQAFV AGA + M G A V + + D L G G + +L +LVAKIRE +++RR ++L + +G V YVHNA P MG A LV ++ D ++ +++ KRLAMHVVAA P +L+ A+VP V+E E+ + + A S K P +V KMTEGRLRK+ E+ L++Q HM+EEGNP +A++ + E G +++ F++Y+ GE Sbjct: 37 PLALVKELRSASGAPITDCKKALEAEGVDGDIAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGQAGVIVEVNSETDFVARNADFQAFVKDLAGAILRMPPTVGMDGGPAPSVLADKLDIPRLLGQGAGGRGFPLSQDLKDLVAKIRENISVRRIARLALPPGAKGFVGSYVHNALNPSMGAAAGLVAVQCDKLPSQMPALDSFGKRLAMHVVAAKPRFLSPASVPPSVLEYERELIQAQAAGSQKPPAIVAKMTEGRLRKFLGEISLLEQPHMIEEGNPTVAEVAARLGKEAGCVVDVVGFVRYKCGE 346
BLAST of NO20G02570 vs. NCBI_GenBank
Match: EWM20492.1 (elongation factor ts, partial [Nannochloropsis gaditana]) HSP 1 Score: 241.9 bits (616), Expect = 3.400e-60 Identity = 135/167 (80.84%), Postives = 144/167 (86.23%), Query Frame = 0 Query: 57 MRVSISLLCAAAVLALQQVTAFMPPAAFPSSS-RPTTALRMAAEAVEVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKG 223 MRV+ SLLCAA L LQQ TAF+ PA+FPSS T LRMAAEAVEVPM+LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLV+LAV+GTRGVAVEVNSETDFVARNADFQ FVAGA KTAL +T GA GV ME AL+A +G Sbjct: 1 MRVTTSLLCAAVGLVLQQATAFLSPASFPSSKPASATVLRMAAEAVEVPMDLIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGLTQGAKPGVSDMEHAALIAVRG 167
BLAST of NO20G02570 vs. NCBI_GenBank
Match: OJX80996.1 (translation elongation factor Ts [Magnetospirillum sp. 64-120]) HSP 1 Score: 241.1 bits (614), Expect = 5.800e-60 Identity = 145/300 (48.33%), Postives = 196/300 (65.33%), Query Frame = 0 Query: 102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKR-DRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGP-TGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400 E+ L+K+LR +GA +MDCKKAL E DVEAA DWLRKKG A AK+ R EGLV++A GT+GVAVEVN+ETDFVARN FQ F G AL T GA + DAL AA+ P G ++ L L+A I E M LRRA++L V QGVVA Y+H+AA P +G+ G L+ +++ KL EA+ K++AMHV AANPL+L+S +V +ERE AV + A SGK EV+EKM +GR+RKY+EEVCL+ Q ++++ N KI+ + ++G ++LT F+++ GE Sbjct: 3 EITAALVKELREKTGAGMMDCKKALNETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVAIASAGTKGVAVEVNAETDFVARNDQFQGFAKGVADVAL--TVGA-------DVDALNAAQFPGAGKTVAETLTGLIATIGENMNLRRAAKLEVSQGVVASYMHSAAAPGLGKIGVLIALESAGDTAKL---EALGKQIAMHVAAANPLFLDSGSVDKAALERETAVLTEQAKASGKPAEVIEKMVQGRIRKYYEEVCLLDQVFVIDQEN-KISKVVENAGKDVGAPVKLTGFVRFALGE 289
BLAST of NO20G02570 vs. NCBI_GenBank
Match: WP_024079450.1 (elongation factor Ts [Magnetospirillum gryphiswaldense] >CAM74459.1 Elongation factor Ts [Magnetospirillum gryphiswaldense MSR-1] >CDK98421.1 Elongation factor Ts (EF-Ts) [Magnetospirillum gryphiswaldense MSR-1 v2] >AVM73552.1 Elongation factor Ts [Magnetospirillum gryphiswaldense MSR-1] >AVM77455.1 Elongation factor Ts [Magnetospirillum gryphiswaldense]) HSP 1 Score: 240.4 bits (612), Expect = 9.900e-60 Identity = 146/300 (48.67%), Postives = 197/300 (65.67%), Query Frame = 0 Query: 102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKR-DRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGP-TGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400 E+ L+K+LR +GA +MDCKKAL E DVEAA DWLRKKG A AK+ R EGLV++A GT+GVAVE+N+ETDFV RN FQ FV+G + AL T GA + + L AA+ P G S+ +L L+A I E M LRRA L V QGVVA Y+H+A P +G+ G LV +++ KL EA+ K++AMHV AANPL+L+SA+V +ERE AV + A SGK EV+EKM +GR+RKY+EEVCL+ Q ++++ N KI+ + A E+G ++LT+F ++ GE Sbjct: 3 EITAALVKELREKTGAGMMDCKKALNETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVAIASAGTKGVAVEINAETDFVGRNDQFQGFVSGVAQVAL--TKGA-------DVEVLKAAEFPGAGKSVAEQLTALIATIGENMNLRRAIVLEVSQGVVAGYMHSATAPGLGKIGVLVALESAGDTAKL---EALGKQIAMHVAAANPLFLDSASVDKAALERETAVLTEQAKASGKPAEVIEKMVQGRIRKYYEEVCLLDQVFVIDQEN-KISKVVENLAKELGAPVKLTAFARFALGE 289
BLAST of NO20G02570 vs. NCBI_GenBank
Match: WP_014102883.1 (elongation factor Ts [Micavibrio aeruginosavorus] >AEP09660.1 translation elongation factor Ts [Micavibrio aeruginosavorus ARL-13] >AGH98083.1 Translation elongation factor Ts [Micavibrio aeruginosavorus EPB]) HSP 1 Score: 238.4 bits (607), Expect = 3.800e-59 Identity = 135/299 (45.15%), Postives = 198/299 (66.22%), Query Frame = 0 Query: 102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGPTGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400 ++ ++K+LR SGA +MD K+AL E D+EAA DWLR KG + AK+ R T EGLV++ EGT VEVN+ETDFVARN FQA V K AL G G +E A + +G G S++ L L+A I E M+LRR+++L V+ G+VA YVHNA G +G+ G LV + ++TG+K ++EA+ K++AMHV AANP YL+S++V +V+EREK V R+TA + GK +++EKM EGR+RKY+EEVCL++Q ++ +G KI+ + + ++G ++L F +++ GE Sbjct: 3 DITASMVKELREKSGAGMMDAKQALVENNGDIEAAMDWLRTKGLSKAAKKSGRTTAEGLVAVVAEGTSAAIVEVNAETDFVARNDQFQALVRNVAKAALK-------GAGKVEEVAEVVIEG--GKSVKDTLTTLIATIGENMSLRRSAKLAVNDGIVATYVHNAIGDGLGKIGVLVAL--ESTGDK-AKLEALGKQIAMHVAAANPAYLDSSSVDPDVLEREKNVIRETAKEQGKAADIIEKMLEGRVRKYYEEVCLIEQIFIM-DGETKISKVIENASKDVGAPVKLAGFARFQLGE 288
BLAST of NO20G02570 vs. NCBI_GenBank
Match: OAI44738.1 (elongation factor Ts [Rhizomicrobium sp. SCGC AG-212-E05]) HSP 1 Score: 235.0 bits (598), Expect = 4.200e-58 Identity = 144/299 (48.16%), Postives = 195/299 (65.22%), Query Frame = 0 Query: 103 VPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGPTG-DSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400 + ++K LR +GA +MDCK AL E D+EAA DWLRKKG + AK+ RA EGLV +AV+ + GV +EVN+ETDFVA+N +F+ FV A+K AL G++E+ L+AA P G S++ L LVA+I E MT+RRA+ L V+ GVVA YVHNAA P +G G LVG+K+ A +KL A+AK+LAMHV AA PL L + +VERE V + A+ SGK VVEKM EGR+RKY+EEV L+QQ +ML +G IA L K + ++G +E+ F++++ GE Sbjct: 4 ITASMVKDLRDKTGAGMMDCKNALTENNGDMEAAIDWLRKKGISKAAKKSGRAAAEGLVGVAVDASTGVLLEVNAETDFVAKNEEFKTFVKDASKLALKEG-------GNLEK--LLAA--PMGSSSVQQTLTELVARIGENMTVRRAAALSVNPGVVAAYVHNAASPELGNIGVLVGLKSTADKDKL---SALAKQLAMHVAAAAPLALTKEHLDKALVEREYNVQKDIALQSGKPEAVVEKMMEGRMRKYYEEVVLMQQVYML-DGETPIAKLIEKASKDLGAPVEIEGFVRFKVGE 287
BLAST of NO20G02570 vs. NCBI_GenBank
Match: WP_039996584.1 (elongation factor Ts [Sphingomonas sanxanigenens] >AHE54560.1 elongation factor Ts [Sphingomonas sanxanigenens DSM 19645 = NX02]) HSP 1 Score: 233.4 bits (594), Expect = 1.200e-57 Identity = 142/299 (47.49%), Postives = 189/299 (63.21%), Query Frame = 0 Query: 102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKR-DRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGPTGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400 E+ L+K+LR SGA +MDCKKALAE D+EA+ DWLR KG AT AK+ R EGLV +AV GTRG AVEVNSETDFVA+N FQ FV AL A E +AL AA P G ++ +L VA+I E LRRA+ L V +GVV YVHNAA P +G+ G LV +++ A E L EA+ K+LAMHV AANPL LN + A+++ERE+A+A + A +SGK +VEKM EG + KY +E LV Q ++ +G K++D+ A E G + L ++++++ GE Sbjct: 3 EITAALVKELRERSGAGMMDCKKALAETGGDMEASIDWLRTKGLATAAKKAGRTAAEGLVGVAVSGTRGAAVEVNSETDFVAKNELFQQFVKTVADIALEKGA---------EVEALSAAAWPEGGTVADKLTANVAQIGENQALRRAALLEVSEGVVVSYVHNAAAPGLGKIGVLVALESAAPAEAL---EALGKQLAMHVAAANPLALNEDDLSADMIERERAIAAEKAAESGKPANIVEKMVEGSIAKYRKENALVSQIFVI-DGKSKVSDVVAAAAKEAGSPITLANYVRFQLGE 288
BLAST of NO20G02570 vs. NCBI_GenBank
Match: WP_085372935.1 (elongation factor Ts [Magnetospirillum sp. ME-1] >ARJ65437.1 translation elongation factor Ts [Magnetospirillum sp. ME-1]) HSP 1 Score: 233.4 bits (594), Expect = 1.200e-57 Identity = 137/300 (45.67%), Postives = 189/300 (63.00%), Query Frame = 0 Query: 102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKR-DRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGP-TGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400 E+ L+K+LR +GA +MDCKKAL E DVEAA DWLRKKG A AK+ R EGLV +A G +GVAVEVN+ETDFVARN FQ FV+ AL + DA+ AA P T ++ +L +L+A I E M+LRRA +L V GVVA YVH + P +G+ G LV +++ ++L +V K++AMHV AANP +L+ + V ++REKAV + A SGK V+EKM EGR+RKY+EEVCL +Q +++++ N KI+ + A E+G ++LT F ++ GE Sbjct: 3 EITASLVKELREKTGAGMMDCKKALGETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVGIAAAGNKGVAVEVNAETDFVARNDQFQGFVSAVAAVALDK---------GSDVDAIKAAACPGTDKTVADQLTHLIATIGENMSLRRAVRLEVSAGVVASYVHTSIAPGLGKIGCLVALESTGNADRLAEV---GKQIAMHVAAANPQFLDPSVVDTSALDREKAVLTEQAQASGKPAAVIEKMVEGRIRKYYEEVCLTEQVYVIDQEN-KISKVVENLAKELGTPVKLTGFARFALGE 289
BLAST of NO20G02570 vs. NCBI_GenBank
Match: WP_096702795.1 (elongation factor Ts [Magnetospirillum sp. 15-1]) HSP 1 Score: 232.6 bits (592), Expect = 2.100e-57 Identity = 138/300 (46.00%), Postives = 187/300 (62.33%), Query Frame = 0 Query: 102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKR-DRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGP-TGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400 E+ L+K+LR +GA +MDCKKAL E DVEAA DWLRKKG A AK+ R EGLV +A GT+GVAVEVN+ETDFVARN FQ FVA AL + +A+ AA P T ++ +L +L+A I E M+LRRA +L V GVVA YVH A P +G+ G LV +++ E+L +V K++AMHV AANPL+L+ + V ++REK V + A SGK V+EKM EGR+RKY+EEVCL +Q ++++ N KI+ + E+G ++L F ++ GE Sbjct: 3 EITASLVKELREKTGAGMMDCKKALGETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVGIAAAGTKGVAVEVNAETDFVARNDQFQGFVAAVAAVALDK---------GSDVEAIKAAACPGTDKNVADQLTHLIATIGENMSLRRAVRLEVSAGVVASYVHTAIAPGLGKIGCLVALESTGNAERLAEV---GKQIAMHVAAANPLFLDPSVVDTSALDREKGVLTEQAQASGKPAAVIEKMVEGRIRKYYEEVCLSEQIFVIDQEN-KISKVLENLGKEIGAPVKLAGFARFALGE 289
BLAST of NO20G02570 vs. NCBI_GenBank
Match: WP_068434795.1 (elongation factor Ts [Magnetospirillum sp. XM-1] >CUW40295.1 protein chain elongation factor EF-Ts [Magnetospirillum sp. XM-1]) HSP 1 Score: 231.1 bits (588), Expect = 6.000e-57 Identity = 136/300 (45.33%), Postives = 189/300 (63.00%), Query Frame = 0 Query: 102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKR-DRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGP-TGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400 E+ L+K+LR +GA +MDCKKAL E DVEAA DWLRKKG A AK+ R EGLV +A G +GVAVEVN+ETDFVARN FQ FV+ AL A + +A+ A P T ++ +L +L+A I E M+LRRA +L V GVVA YVH + P +G+ G LV +++ ++L +V K++AMHV AANP +L+ + V ++REKAV + A SGK V+EKM EGR+RKY+EEVCL +Q +++++ N KI+ + A E+G ++LT F ++ GE Sbjct: 3 EITASLVKELREKTGAGMMDCKKALGETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVGIAAAGNKGVAVEVNAETDFVARNDQFQGFVSAVAAVALDKGA---------DIEAIKTAACPGTDKNVADQLTHLIATIGENMSLRRAVRLEVSAGVVASYVHTSIAPGLGKIGCLVALESTGNADRLAEV---GKQIAMHVAAANPQFLDPSVVDTSALDREKAVLTEQAQASGKPAAVIEKMVEGRIRKYYEEVCLTEQVYVIDQEN-KISKVVENLAKELGTPVKLTGFARFALGE 289 The following BLAST results are available for this feature:
BLAST of NO20G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G02570 ID=NO20G02570|Name=NO20G02570|organism=Nannochloropsis oceanica|type=gene|length=3599bpback to top protein sequence of NO20G02570.1 >NO20G02570.1-protein ID=NO20G02570.1-protein|Name=NO20G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bpback to top Synonyms
Publications
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