NO20G02570, NO20G02570 (gene) Nannochloropsis oceanica

Overview
NameNO20G02570
Unique NameNO20G02570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3599
Alignment locationchr20:813727..817325 +

Link to JBrowse

Properties
Property NameValue
DescriptionElongation factor Ts, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:813727..817325 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003746translation elongation factor activity
GO:0003746translation elongation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO:0006414translational elongation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR009060UBA-like
IPR036402EF-Ts_dimer_sf
IPR001816Transl_elong_EFTs/EF1B
IPR014039Transl_elong_EFTs/EF1B_dimer
Homology
BLAST of NO20G02570 vs. NCBI_GenBank
Match: EWM28678.1 (elongation factor ts [Nannochloropsis gaditana])

HSP 1 Score: 250.8 bits (639), Expect = 7.400e-63
Identity = 147/310 (47.42%), Postives = 199/310 (64.19%), Query Frame = 0
Query:  104 PMELIKKLRGMSGAPIMDCKKALAEEKL--DVEAAFDWLRKKGQATIAKRDRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFV---AGA---TKTALSMTAGAAAGVGSMERD---ALMAAKGPTGDSIETELANLVAKIREGMTLRRASQLVVD---QGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400
            P+ L+K+LR  SGAPI DCKKAL  E +  D+  AF+WLRKKGQAT+ K +RA  EGLV +AVEG  GV VEVNSETDFVARNADFQAFV   AGA       + M  G A  V + + D    L    G  G  +  +L +LVAKIRE +++RR ++L +    +G V  YVHNA  P MG A  LV ++ D    ++  +++  KRLAMHVVAA P +L+ A+VP  V+E E+ + +  A  S K P +V KMTEGRLRK+  E+ L++Q HM+EEGNP +A++  +   E G  +++  F++Y+ GE
Sbjct:   37 PLALVKELRSASGAPITDCKKALEAEGVDGDIAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGQAGVIVEVNSETDFVARNADFQAFVKDLAGAILRMPPTVGMDGGPAPSVLADKLDIPRLLGQGAGGRGFPLSQDLKDLVAKIRENISVRRIARLALPPGAKGFVGSYVHNALNPSMGAAAGLVAVQCDKLPSQMPALDSFGKRLAMHVVAAKPRFLSPASVPPSVLEYERELIQAQAAGSQKPPAIVAKMTEGRLRKFLGEISLLEQPHMIEEGNPTVAEVAARLGKEAGCVVDVVGFVRYKCGE 346          
BLAST of NO20G02570 vs. NCBI_GenBank
Match: EWM20492.1 (elongation factor ts, partial [Nannochloropsis gaditana])

HSP 1 Score: 241.9 bits (616), Expect = 3.400e-60
Identity = 135/167 (80.84%), Postives = 144/167 (86.23%), Query Frame = 0
Query:   57 MRVSISLLCAAAVLALQQVTAFMPPAAFPSSS-RPTTALRMAAEAVEVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKG 223
            MRV+ SLLCAA  L LQQ TAF+ PA+FPSS     T LRMAAEAVEVPM+LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLV+LAV+GTRGVAVEVNSETDFVARNADFQ FVAGA KTAL +T GA  GV  ME  AL+A +G
Sbjct:    1 MRVTTSLLCAAVGLVLQQATAFLSPASFPSSKPASATVLRMAAEAVEVPMDLIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGLTQGAKPGVSDMEHAALIAVRG 167          
BLAST of NO20G02570 vs. NCBI_GenBank
Match: OJX80996.1 (translation elongation factor Ts [Magnetospirillum sp. 64-120])

HSP 1 Score: 241.1 bits (614), Expect = 5.800e-60
Identity = 145/300 (48.33%), Postives = 196/300 (65.33%), Query Frame = 0
Query:  102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKR-DRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGP-TGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400
            E+   L+K+LR  +GA +MDCKKAL E   DVEAA DWLRKKG A  AK+  R   EGLV++A  GT+GVAVEVN+ETDFVARN  FQ F  G    AL  T GA       + DAL AA+ P  G ++   L  L+A I E M LRRA++L V QGVVA Y+H+AA P +G+ G L+ +++     KL   EA+ K++AMHV AANPL+L+S +V    +ERE AV  + A  SGK  EV+EKM +GR+RKY+EEVCL+ Q  ++++ N KI+ +      ++G  ++LT F+++  GE
Sbjct:    3 EITAALVKELREKTGAGMMDCKKALNETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVAIASAGTKGVAVEVNAETDFVARNDQFQGFAKGVADVAL--TVGA-------DVDALNAAQFPGAGKTVAETLTGLIATIGENMNLRRAAKLEVSQGVVASYMHSAAAPGLGKIGVLIALESAGDTAKL---EALGKQIAMHVAAANPLFLDSGSVDKAALERETAVLTEQAKASGKPAEVIEKMVQGRIRKYYEEVCLLDQVFVIDQEN-KISKVVENAGKDVGAPVKLTGFVRFALGE 289          
BLAST of NO20G02570 vs. NCBI_GenBank
Match: WP_024079450.1 (elongation factor Ts [Magnetospirillum gryphiswaldense] >CAM74459.1 Elongation factor Ts [Magnetospirillum gryphiswaldense MSR-1] >CDK98421.1 Elongation factor Ts (EF-Ts) [Magnetospirillum gryphiswaldense MSR-1 v2] >AVM73552.1 Elongation factor Ts [Magnetospirillum gryphiswaldense MSR-1] >AVM77455.1 Elongation factor Ts [Magnetospirillum gryphiswaldense])

HSP 1 Score: 240.4 bits (612), Expect = 9.900e-60
Identity = 146/300 (48.67%), Postives = 197/300 (65.67%), Query Frame = 0
Query:  102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKR-DRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGP-TGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400
            E+   L+K+LR  +GA +MDCKKAL E   DVEAA DWLRKKG A  AK+  R   EGLV++A  GT+GVAVE+N+ETDFV RN  FQ FV+G  + AL  T GA       + + L AA+ P  G S+  +L  L+A I E M LRRA  L V QGVVA Y+H+A  P +G+ G LV +++     KL   EA+ K++AMHV AANPL+L+SA+V    +ERE AV  + A  SGK  EV+EKM +GR+RKY+EEVCL+ Q  ++++ N KI+ +    A E+G  ++LT+F ++  GE
Sbjct:    3 EITAALVKELREKTGAGMMDCKKALNETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVAIASAGTKGVAVEINAETDFVGRNDQFQGFVSGVAQVAL--TKGA-------DVEVLKAAEFPGAGKSVAEQLTALIATIGENMNLRRAIVLEVSQGVVAGYMHSATAPGLGKIGVLVALESAGDTAKL---EALGKQIAMHVAAANPLFLDSASVDKAALERETAVLTEQAKASGKPAEVIEKMVQGRIRKYYEEVCLLDQVFVIDQEN-KISKVVENLAKELGAPVKLTAFARFALGE 289          
BLAST of NO20G02570 vs. NCBI_GenBank
Match: WP_014102883.1 (elongation factor Ts [Micavibrio aeruginosavorus] >AEP09660.1 translation elongation factor Ts [Micavibrio aeruginosavorus ARL-13] >AGH98083.1 Translation elongation factor Ts [Micavibrio aeruginosavorus EPB])

HSP 1 Score: 238.4 bits (607), Expect = 3.800e-59
Identity = 135/299 (45.15%), Postives = 198/299 (66.22%), Query Frame = 0
Query:  102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGPTGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400
            ++   ++K+LR  SGA +MD K+AL E   D+EAA DWLR KG +  AK+  R T EGLV++  EGT    VEVN+ETDFVARN  FQA V    K AL        G G +E  A +  +G  G S++  L  L+A I E M+LRR+++L V+ G+VA YVHNA G  +G+ G LV +  ++TG+K  ++EA+ K++AMHV AANP YL+S++V  +V+EREK V R+TA + GK  +++EKM EGR+RKY+EEVCL++Q  ++ +G  KI+ +    + ++G  ++L  F +++ GE
Sbjct:    3 DITASMVKELREKSGAGMMDAKQALVENNGDIEAAMDWLRTKGLSKAAKKSGRTTAEGLVAVVAEGTSAAIVEVNAETDFVARNDQFQALVRNVAKAALK-------GAGKVEEVAEVVIEG--GKSVKDTLTTLIATIGENMSLRRSAKLAVNDGIVATYVHNAIGDGLGKIGVLVAL--ESTGDK-AKLEALGKQIAMHVAAANPAYLDSSSVDPDVLEREKNVIRETAKEQGKAADIIEKMLEGRVRKYYEEVCLIEQIFIM-DGETKISKVIENASKDVGAPVKLAGFARFQLGE 288          
BLAST of NO20G02570 vs. NCBI_GenBank
Match: OAI44738.1 (elongation factor Ts [Rhizomicrobium sp. SCGC AG-212-E05])

HSP 1 Score: 235.0 bits (598), Expect = 4.200e-58
Identity = 144/299 (48.16%), Postives = 195/299 (65.22%), Query Frame = 0
Query:  103 VPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGPTG-DSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400
            +   ++K LR  +GA +MDCK AL E   D+EAA DWLRKKG +  AK+  RA  EGLV +AV+ + GV +EVN+ETDFVA+N +F+ FV  A+K AL          G++E+  L+AA  P G  S++  L  LVA+I E MT+RRA+ L V+ GVVA YVHNAA P +G  G LVG+K+ A  +KL    A+AK+LAMHV AA PL L    +   +VERE  V +  A+ SGK   VVEKM EGR+RKY+EEV L+QQ +ML +G   IA L  K + ++G  +E+  F++++ GE
Sbjct:    4 ITASMVKDLRDKTGAGMMDCKNALTENNGDMEAAIDWLRKKGISKAAKKSGRAAAEGLVGVAVDASTGVLLEVNAETDFVAKNEEFKTFVKDASKLALKEG-------GNLEK--LLAA--PMGSSSVQQTLTELVARIGENMTVRRAAALSVNPGVVAAYVHNAASPELGNIGVLVGLKSTADKDKL---SALAKQLAMHVAAAAPLALTKEHLDKALVEREYNVQKDIALQSGKPEAVVEKMMEGRMRKYYEEVVLMQQVYML-DGETPIAKLIEKASKDLGAPVEIEGFVRFKVGE 287          
BLAST of NO20G02570 vs. NCBI_GenBank
Match: WP_039996584.1 (elongation factor Ts [Sphingomonas sanxanigenens] >AHE54560.1 elongation factor Ts [Sphingomonas sanxanigenens DSM 19645 = NX02])

HSP 1 Score: 233.4 bits (594), Expect = 1.200e-57
Identity = 142/299 (47.49%), Postives = 189/299 (63.21%), Query Frame = 0
Query:  102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKR-DRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGPTGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400
            E+   L+K+LR  SGA +MDCKKALAE   D+EA+ DWLR KG AT AK+  R   EGLV +AV GTRG AVEVNSETDFVA+N  FQ FV      AL   A         E +AL AA  P G ++  +L   VA+I E   LRRA+ L V +GVV  YVHNAA P +G+ G LV +++ A  E L   EA+ K+LAMHV AANPL LN   + A+++ERE+A+A + A +SGK   +VEKM EG + KY +E  LV Q  ++ +G  K++D+    A E G  + L ++++++ GE
Sbjct:    3 EITAALVKELRERSGAGMMDCKKALAETGGDMEASIDWLRTKGLATAAKKAGRTAAEGLVGVAVSGTRGAAVEVNSETDFVAKNELFQQFVKTVADIALEKGA---------EVEALSAAAWPEGGTVADKLTANVAQIGENQALRRAALLEVSEGVVVSYVHNAAAPGLGKIGVLVALESAAPAEAL---EALGKQLAMHVAAANPLALNEDDLSADMIERERAIAAEKAAESGKPANIVEKMVEGSIAKYRKENALVSQIFVI-DGKSKVSDVVAAAAKEAGSPITLANYVRFQLGE 288          
BLAST of NO20G02570 vs. NCBI_GenBank
Match: WP_085372935.1 (elongation factor Ts [Magnetospirillum sp. ME-1] >ARJ65437.1 translation elongation factor Ts [Magnetospirillum sp. ME-1])

HSP 1 Score: 233.4 bits (594), Expect = 1.200e-57
Identity = 137/300 (45.67%), Postives = 189/300 (63.00%), Query Frame = 0
Query:  102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKR-DRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGP-TGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400
            E+   L+K+LR  +GA +MDCKKAL E   DVEAA DWLRKKG A  AK+  R   EGLV +A  G +GVAVEVN+ETDFVARN  FQ FV+     AL             + DA+ AA  P T  ++  +L +L+A I E M+LRRA +L V  GVVA YVH +  P +G+ G LV +++    ++L +V    K++AMHV AANP +L+ + V    ++REKAV  + A  SGK   V+EKM EGR+RKY+EEVCL +Q +++++ N KI+ +    A E+G  ++LT F ++  GE
Sbjct:    3 EITASLVKELREKTGAGMMDCKKALGETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVGIAAAGNKGVAVEVNAETDFVARNDQFQGFVSAVAAVALDK---------GSDVDAIKAAACPGTDKTVADQLTHLIATIGENMSLRRAVRLEVSAGVVASYVHTSIAPGLGKIGCLVALESTGNADRLAEV---GKQIAMHVAAANPQFLDPSVVDTSALDREKAVLTEQAQASGKPAAVIEKMVEGRIRKYYEEVCLTEQVYVIDQEN-KISKVVENLAKELGTPVKLTGFARFALGE 289          
BLAST of NO20G02570 vs. NCBI_GenBank
Match: WP_096702795.1 (elongation factor Ts [Magnetospirillum sp. 15-1])

HSP 1 Score: 232.6 bits (592), Expect = 2.100e-57
Identity = 138/300 (46.00%), Postives = 187/300 (62.33%), Query Frame = 0
Query:  102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKR-DRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGP-TGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400
            E+   L+K+LR  +GA +MDCKKAL E   DVEAA DWLRKKG A  AK+  R   EGLV +A  GT+GVAVEVN+ETDFVARN  FQ FVA     AL             + +A+ AA  P T  ++  +L +L+A I E M+LRRA +L V  GVVA YVH A  P +G+ G LV +++    E+L +V    K++AMHV AANPL+L+ + V    ++REK V  + A  SGK   V+EKM EGR+RKY+EEVCL +Q  ++++ N KI+ +      E+G  ++L  F ++  GE
Sbjct:    3 EITASLVKELREKTGAGMMDCKKALGETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVGIAAAGTKGVAVEVNAETDFVARNDQFQGFVAAVAAVALDK---------GSDVEAIKAAACPGTDKNVADQLTHLIATIGENMSLRRAVRLEVSAGVVASYVHTAIAPGLGKIGCLVALESTGNAERLAEV---GKQIAMHVAAANPLFLDPSVVDTSALDREKGVLTEQAQASGKPAAVIEKMVEGRIRKYYEEVCLSEQIFVIDQEN-KISKVLENLGKEIGAPVKLAGFARFALGE 289          
BLAST of NO20G02570 vs. NCBI_GenBank
Match: WP_068434795.1 (elongation factor Ts [Magnetospirillum sp. XM-1] >CUW40295.1 protein chain elongation factor EF-Ts [Magnetospirillum sp. XM-1])

HSP 1 Score: 231.1 bits (588), Expect = 6.000e-57
Identity = 136/300 (45.33%), Postives = 189/300 (63.00%), Query Frame = 0
Query:  102 EVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKR-DRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALSMTAGAAAGVGSMERDALMAAKGP-TGDSIETELANLVAKIREGMTLRRASQLVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAMHVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLRKYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGE 400
            E+   L+K+LR  +GA +MDCKKAL E   DVEAA DWLRKKG A  AK+  R   EGLV +A  G +GVAVEVN+ETDFVARN  FQ FV+     AL   A         + +A+  A  P T  ++  +L +L+A I E M+LRRA +L V  GVVA YVH +  P +G+ G LV +++    ++L +V    K++AMHV AANP +L+ + V    ++REKAV  + A  SGK   V+EKM EGR+RKY+EEVCL +Q +++++ N KI+ +    A E+G  ++LT F ++  GE
Sbjct:    3 EITASLVKELREKTGAGMMDCKKALGETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVGIAAAGNKGVAVEVNAETDFVARNDQFQGFVSAVAAVALDKGA---------DIEAIKTAACPGTDKNVADQLTHLIATIGENMSLRRAVRLEVSAGVVASYVHTSIAPGLGKIGCLVALESTGNADRLAEV---GKQIAMHVAAANPQFLDPSVVDTSALDREKAVLTEQAQASGKPAAVIEKMVEGRIRKYYEEVCLTEQVYVIDQEN-KISKVVENLAKELGTPVKLTGFARFALGE 289          
The following BLAST results are available for this feature:
BLAST of NO20G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28678.17.400e-6347.42elongation factor ts [Nannochloropsis gaditana][more]
EWM20492.13.400e-6080.84elongation factor ts, partial [Nannochloropsis gad... [more]
OJX80996.15.800e-6048.33translation elongation factor Ts [Magnetospirillum... [more]
WP_024079450.19.900e-6048.67elongation factor Ts [Magnetospirillum gryphiswald... [more]
WP_014102883.13.800e-5945.15elongation factor Ts [Micavibrio aeruginosavorus] ... [more]
OAI44738.14.200e-5848.16elongation factor Ts [Rhizomicrobium sp. SCGC AG-2... [more]
WP_039996584.11.200e-5747.49elongation factor Ts [Sphingomonas sanxanigenens] ... [more]
WP_085372935.11.200e-5745.67elongation factor Ts [Magnetospirillum sp. ME-1] >... [more]
WP_096702795.12.100e-5746.00elongation factor Ts [Magnetospirillum sp. 15-1][more]
WP_068434795.16.000e-5745.33elongation factor Ts [Magnetospirillum sp. XM-1] >... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR113ngnoR113Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02570.1NO20G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101055g1gene9915Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02570.1NO20G02570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02570 ID=NO20G02570|Name=NO20G02570|organism=Nannochloropsis oceanica|type=gene|length=3599bp
AAAAGACACTCCAGGCGGCCGTGTGTAAGTCACTAACCCAAAATCGACTA
CACTGAAAAGGAAAGCTTTCTAAAGATTCAAAGTTTATGCATTCTTGCTT
TATTCTCCCAAATTTCCAAGACGACCAAGCGTCCCCATTGCTTCGCTGCC
ACACACGAGCACGGGTTTCAGCAGATCTGGAACTTGAACACTCCTTGCCT
GACTTACGCAGCTGCCACATACTCAGCCCATCCCATCCGCATGCGGGCAT
ATAATAGGAACACTCCCACAGTGGACATAGTGTAATGCTGCGAGGTCTTG
TCCAGCAGCGCTTCCCTTTACACCTAACCATCATCATAATCCTGCCCCCC
GCCATGCTGTGGCTCGTCAGCACAGGCGCGTCCGGAATTAATATCCCACG
TCTCATTTTGCTCAAAACCCACGTCCCTCTCACAGCCAACCCCAGCAGCA
AAATGCGTGTGTCCATTAGCCTTCTGTGCGCCGCTGCGGTGCTTGCCCTT
CAGCAGGTGACGGCTTTCATGCCCCCTGCTGCCTTCCCTTCCTCCTCCCG
CCCGACAACGGCCCTGCGTATGGCGGCCGAGGCGGTGGAAGTGCCCATGG
AGCTGATCAAGAAGCTGCGAGGCATGTCAGGCGCACCCATTATGGACTGC
AAAAAGGCATTGGCGGAGGAGAAGCTAGgtacgaagaggagggtgggaag
ggagggagcgagccaggaatggagggacgacaggaaggattggggtgtat
gctggaactgaggatgccacgctctttgccaccgagattgtagtttattc
acccttctttgtttttggaatcgacctgtatcttctcaactgctcttctc
ttctctttccctccctttcgctcttcttcatcttgcccagATGTGGAGGC
GGCCTTCGACTGGCTGCGCAAGAAGGGGCAAGCCACCATCGCCAAGCGCG
ACCGAGCCACGAAGGAGGGTTTGGTCTCTCTGGCAGTAGAGGGCACCCGG
GGTGTGGCTGTCGAGgtacgcttctagcgatccaacccttccctccccct
cccatcctccatcctccccttcatgtccattgcttctttttcattcaacc
caaacctcaccctccctccatccctccctccttctctccctagGTCAATT
CCGAGACTGATTTTGTTGCACGTAACGCTGATTTTCAAGCCTTCGTAGCG
GGGGCGACCAAGACGGCGCTGAGCATGACAGCCGGGGCCGCGGCAGGGGT
TGGGAGCATGGAGAGGGATGCTCTGATGGCGgtagggaaggaaggaagga
aggagggaatgagggagggaggaagggatggtctatttgcactcgtagtg
ggagagagaggggaggcattggggatagtggtgttgttgaggattacaaa
ccataaggatcgataactgactctgtaatgaagagcaaacagaacgtaat
gctttgtaatgaaacaaccagcgaaaggccaccatcacttctcacacaca
acgaggaagggaggaaagaagtattggagagaggggtgggcgaaggaagc
ggagggcgtctaggcaaagaaatagtcgaggaaggtactcccaagtgcac
ttatcttcacacgcctctccccccctccttccctccctccctcccaccct
ccctcagGCCAAGGGCCCCACCGGCGACAGCATCGAGACGGAGCTCGCAA
ACCTGGTGGCCAAAATCCGCGAGGGCATGACGCTTCGGCGCGCTTCGCAG
CTGGTGGTGGACCAGGGGGTAGTGGCTTGTTACGTGCACAACGCCGCAGG
CCCGCTCATGGGCCAGgtgcgttaatgctcgcccgccctcttcccctccc
tccctcctgccctccttctcctcgcttgcatctcatttatcgaagaagag
cgtggatctcaatccgctctccctctccctccctccctccctctcttctt
tgtgtctcattatttctccttccctcgagccggtgctgtggtggccccga
gaagagactccgcagtgacacgtttggacccgctggctcaagcagtgata
gtcatccatcaaaacgtctatctctctcaaactctcctttccctccctcc
ctccctccttccctctctccctccctccctcagGCCGGTGCGCTGGTGGG
TATCAAGACAGACGCCACGGGGGAGAAGCTCGAGCAAGTGGAGGCCATGG
CCAAGCGTCTGGCGATGCACGTGGTGGCTGCTAACCCGCTCTACCTCAAT
AGgtgggtgtttcgtcgtcccttcctccctccctccctccctccttcctt
ccttccctccctccctccctccctctatctccctcgaggttcccttcgtc
cctcaattttcttcttccagtgctgattggtgatcttgcttctctcctag
agacttttggagagctcgcaggcttgtctccttcgaaccctccctccctc
cctccttctttccaccccttgtgcctccttctaaccctccctccctccct
ccctccctccttccctcccccctccttccctaccttcctcctccttctag
TGCCGCCGTTCCGGCCGAGGTGGTGGAGCGGGAGAAGGCTGTGGCCCGCC
AGACGGCCATTGACTCGGGCAAAAAGCCCGAGGTGGTAGAGAAAATGACC
GAGGgtaagagaaaggcaacatgccgtccctccttcccttccttccttcc
ttccctcccttcctttctttctgtggtgtctgaccgactgcattggactc
tgactagccggaagtattgcccctccctccctccctccctccctccctcc
ttcttggtccttccggtgaaagaaatgacgactcccttccctgcttctcg
tttgtttcgttcggtttcgtcctctcctcactcccccccctgtccctccc
cccacgctctagGCCGCCTGCGCAAGTACTTCGAGGAGGTGTGCTTAGTG
CAGCAGAACCATATGCTCGAGGAGGGTAACCCCAAGgtgcgccctccctc
cctccctccctccctccctccctccctccctccctccctccctgcttccc
ctcctccctttctttgtccctccttgtcttcccctctcctcttgctgctg
ctgcggatgctgctgttgttgcttcttctttttttgtgcttgccctccca
aatcctttttctcgtctgtctttcttgactaacgacagctgcagcttcct
ccatttctcttctctttctctttccattcctccttcagaagattggccga
cctctccctctcgtactcgctcgctccctccctccacacacactcaccct
cccttcctccctctctccacacactctcaccctcccttcctccctccctc
tctccctccctccctccctccctccctccctccctcagATCGCGGACCTC
TTCACCAAGACGGCGGCGGAGATGGGCGTCACGCTCGAGCTCACTTCCTT
CCTCAAGTACCGCACAGGGGAGGAATAAACAGAGGAAGGAGGGAAAGAGG
GAGGGACGGAGGAAGGGAGGGAGGGAGGGAGGGAGGACGAAAGAGGAGCA
CAGGGAGGTTGAAGGAGGGAGGGAACAGCAGTGATTGTTTTTACAGCAA
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protein sequence of NO20G02570.1

>NO20G02570.1-protein ID=NO20G02570.1-protein|Name=NO20G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MLRGLVQQRFPLHLTIIIILPPAMLWLVSTGASGINIPRLILLKTHVPLT
ANPSSKMRVSISLLCAAAVLALQQVTAFMPPAAFPSSSRPTTALRMAAEA
VEVPMELIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAK
RDRATKEGLVSLAVEGTRGVAVEVNSETDFVARNADFQAFVAGATKTALS
MTAGAAAGVGSMERDALMAAKGPTGDSIETELANLVAKIREGMTLRRASQ
LVVDQGVVACYVHNAAGPLMGQAGALVGIKTDATGEKLEQVEAMAKRLAM
HVVAANPLYLNSAAVPAEVVEREKAVARQTAIDSGKKPEVVEKMTEGRLR
KYFEEVCLVQQNHMLEEGNPKIADLFTKTAAEMGVTLELTSFLKYRTGEE
*
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