NO20G02520.1, NO20G02520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02520.1
Unique NameNO20G02520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2306
Alignment locationchr20:792530..796346 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:792530..796346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO20G02520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02520NO20G02520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02520.1NO20G02520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02520.1.cds1NO20G02520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02520.1.cds2NO20G02520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02520.1.cds3NO20G02520.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02520.1.cds4NO20G02520.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02520.1.cds5NO20G02520.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02520.1.cds6NO20G02520.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02520.1.cds7NO20G02520.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02520.1.cds8NO20G02520.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02520.1.cds9NO20G02520.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02520.1 ID=NO20G02520.1|Name=NO20G02520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2306bp
ACAGATAAAGACTGTATACAAGGAGAATAAGCAAAGAAACATGAAGAGAA
GTACCGCATCTATTGTCGTGGCCGCCAAAATGCCCAGCTCGCCAAGCTCC
CCTCAGATAATCACCAGGCGCTCCAGCTGTGACTCCCAAGTAGAAGCCGC
CCGTCGCCATGCCACGGCCGCGGGTTTATTGGAGAGTATCGTGGAGGGAA
TGCAAATCAAGGTCTCGGCCTTGCTTCTCGAGAATGAGGAATCCCAAGAA
GCGGCGCTGACGGCCGAGGTGCACATTGACGACCTCAAGTCCTTCGTCGC
CCAGCGTCAGTTCCGTATTAAGGAACTGAAGAAGAGCAAGGAAGCTCTAG
AGAAGGAATTAGAAGAGGCGATGGCCACAGTCACGACCAGGGGAACCGAG
CTTCAACTTCTAACGAAGGAGTATGCAGCCCTGCAGAATGTTCTGGAGAC
GGAGAAGACCAGTGCCACGACCGCCCAAGCCCAGCTGGAGGAGATGCTGG
CAGCAGCGGAGAGCAGTAGAAATGAAGAGGTGGAAAAAATGAAGAAGCAG
GAACAGGAACGACGCCTGCTTCAGACGCGTTTGGCGGCAGTGGAGGAGGA
GATGAGGGGGAGGGAGGAGGAGGTGGTGAGGGGAGAGGAGGAAAGGAGGA
GGCTACAGGAGCGCATCGCGGAGATGGAGGAAGCTACTCAAGCGCTGCAA
GAACGACTTACCACCACCACCGCCCGCCTGAGTCACGTCGAGGCCGAGGC
CCTCTGTCTCCAGGAGAAGCTTACCTCTGCCCTTATCGCGCGCCAAGACA
CCTCCATCCGCATTCTATCCCTGGAGGAGGAAGCCGCAGCAACAGCAGTA
ATGGCAGCAACGGCAGCAGCAGAGACCATACGGCGACAGGAAGGGGAGGT
GCAAAGCTTGGAGACAGCCAACAAAAAGGGGGGCAACAGACATGCGCCTC
TTGCTGAGGCCAACTCCCTCATTCAGCGCCTCGAAGCTTCCCTCAAGAGC
AAGATGGAGACAGAGACCGCTCAGACGCAGCAGATTACAGCTGTCACTGG
CATTGCCAAGGCCCTCGAGGCACAGCTCAACGAAGAGATTGCCTTTCGCG
TCATGCTTGAAGATCGTTACCGTGAGCTTTTTGGCCGTGTCTCGTCCCTT
AAGCACGTTGCGCCTATCTCTTCCTCTTTGACTACCTTGTCTTCGTCCTC
GCTCTCCCTTCTTCCCTCCTCCTCATCCTTGGCGAGGATCCCCCCTCCCC
CCATGGCCCCCTCCTCTTGCCCTCGGCCTTGATCTTTCCATTCAACAAGA
GAGCAATGGGGACAAAAATGACGCAGCCTGTGGCGCACGGATGACGACCG
GGACCCAACGAAAGGGGGATGGGAGTCAAAAAGGGAGGAAGGAGAGAGAG
GGTGTTGTGCTCTTCTTTCTCTCCTGCCAAAAAGGGAGGAGTATATTCAA
AAGAGCGGGGCACCACAATACCCTCCCAAGTCCCTACAATCATCATTCCA
TGCAACACATCGGCCCCCGAACTGAGCCCCCTCCCCCTTCCGACCGAGAA
GCACAATGAGAACAAAGAATATGGGAAAAAATCTCCGCTGAAGAAAAGCC
ACTATTGCTGATACCGCAAGGAGAAATGTTGGGGTTAAGTTCGGCAGGTG
ATGCGGACGCAGAGGAGCTTGCCTACCCTGTGATCTCCTCTATGATTCCC
CTCCTCCTGACCCTGTATGCGCCATCCGAGGGCTTTGCTGGTGAAAAACC
TGCCACAGCCATTTAAAACTCGGCAAAAATAAGGGAAGAATGTACAACAA
TTTATTGTTGAAGGCGTTCTCTCGTTTGTAATCCTGAGAGGAGGCACGCT
TGTGTAAACACTTGCGTTTGCATTTGTCTGCAGATAGGTTGCACGCGATA
ATTTTAGGATTGTAGGAAACTACAGGAAAAACTATCGCTACCTCTACCCT
AACATCTCCCCGGTTGAGGCAAAGCTGTAACTATGGGGTTACCACGTACA
CCACACCAAACGATATCCTATCAAAGCAAGGGGTTCGAGAAAATGGGGAA
ACACTTCATTATTCTGGGGTTTCAGCCCAAGTAGAAGCCCAAATAATTAC
GTCTCTTTTTGATGGGCCAGACTTGGACCCTAGGATTGTACGCATACATG
CATACATACGGCTCGATCTAATGACAGCGCTACCGCCAGCCAGTGCAGTG
ATCAAGGTGACATCCTGAAGGTTTGGATGCAGTGCTCACAAGTACACCGT
ACATTATGGACGCCTTTCGCTTCTTTCGGTATTTAATGTACGTGTATTTA
TACACC
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protein sequence of NO20G02520.1

>NO20G02520.1-protein ID=NO20G02520.1-protein|Name=NO20G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MKRSTASIVVAAKMPSSPSSPQIITRRSSCDSQVEAARRHATAAGLLESI
VEGMQIKVSALLLENEESQEAALTAEVHIDDLKSFVAQRQFRIKELKKSK
EALEKELEEAMATVTTRGTELQLLTKEYAALQNVLETEKTSATTAQAQLE
EMLAAAESSRNEEVEKMKKQEQERRLLQTRLAAVEEEMRGREEEVVRGEE
ERRRLQERIAEMEEATQALQERLTTTTARLSHVEAEALCLQEKLTSALIA
RQDTSIRILSLEEEAAATAVMAATAAAETIRRQEGEVQSLETANKKGGNR
HAPLAEANSLIQRLEASLKSKMETETAQTQQITAVTGIAKALEAQLNEEI
AFRVMLEDRYRELFGRVSSLKHVAPISSSLTTLSSSSLSLLPSSSSLARI
PPPPMAPSSCPRP*
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mRNA from alignment at chr20:792530..796346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02520.1 ID=NO20G02520.1|Name=NO20G02520.1|organism=Nannochloropsis oceanica|type=mRNA|length=3817bp|location=Sequence derived from alignment at chr20:792530..796346- (Nannochloropsis oceanica)
ACAGATAAAGACTGTATACAAGGAGAATAAGCAAAGAAACATGAAGAGAA
GTACCGCATCTATTGTCGTGGCCGCCAAAATGCCCAGCTCGCCAAGCTCC
CCTCAGATAATCACCAGGTATCTGACATACCTTGCCTGCCGCTCTCAACA
CCTCCCTTCCGCCCTAACCCGGGTGCCAGCATTAGTACATTCACAGCATG
CCACCACTGGTGGGCATCACAACATACACTATTTCATTCTAGCCCGTAAA
CTTTACTCTTCACTTGCCACGTACCCACGACTGTCCCAATCGCTATTATC
GTCTGTCTGATCCCTGCGCACAATTATATATTATATCCCTCCCTCCTTCC
CTCCCTCCCTCCCTTCATCTTAACCCTATAGGCGCTCCAGCTGTGACTCC
CAAGTAGAAGCCGCCCGTCGCCATGCCACGGCCGCGGGTTTATTGGAGAG
TATCGTGGAGGGAATGCAAATCAAGGTCTCGGCCTTGCTTCTCGAGAATG
AGGAATCCCAAGAAGCGGCGCTGACGGCCGAGGTGCACATTGACGACCTC
AAGGTGAGGAGGGAGGAAGAAAGGAAGGAAGACAGGAAGTAAGGGAGAGA
GGGAGACGGGGAGACCCATGTGATATGCTGGTTATCAAGGTGGGCGTGTA
CTAGGATACGACAGGCGCATTCACTATCCACCCACCCTCCCTCCCTCCCT
CCCTCCCTCCCCCCCTCCCTCCCTCCCTTCATCTCTTCCTCCCACCTTCC
CTCCCTAGTCCTTCGTCGCCCAGCGTCAGTTCCGTATTAAGGAACTGAAG
AAGAGCAAGGAAGCTCTAGAGAAGGAATTAGAAGAGGCGATGGTAAGAGA
GGAGGAGGAAGGGAGGGATGGCAATTAGGGGGTAGAGAGGTGGTTCCGGG
ACAAGCTGGAAGACGGATGTATCCACGCCCTCATTCTTCTCCCCCCCACT
CCCTCTTTCCTTCAGGCCACAGTCACGACCAGGGGAACCGAGCTTCAACT
TCTAACGAAGGAGTATGCAGCCCTGCAGAATGTTCTGGAGACGGAGAAGG
TGAGGGAGTGAAAGAGAAAGAAAAAGAGGGAGGAGAGAGAGAAGGGAAGA
GGAGGAAAAGAGAGGGGAAAGGGGGATGGAGAAGGGGGGAGGATGAAACG
GAAATACTTATAAATGAGTACAACTCACAACGTGAAATTGTCGGGTATGT
GTCGCTTCCCTAAACCTTTTTGTGCAGATGACACTCCCTCCCTCCCTCCC
TCCCTCCCTCCCGTAGACCAGTGCCACGACCGCCCAAGCCCAGCTGGAGG
AGATGCTGGCAGCAGCGGAGAGCAGTAGAAATGAAGAGGTGGAAAAAATG
AAGAAGCAGGAACAGGAACGACGCCTGCTTCAGACGCGTTTGGCGGCAGT
GGAGGAGGAGATGAGGGGGAGGGAGGAGGAGGTGGTGAGGGGAGAGGAGG
AAAGGAGGAGGCTACAGGAGCGCATCGCGGAGATGGAGGAAGGTAGATAA
GAGAGGAAGGGGCGGAGGGAGGGAGGGAGAGAGGGCAGGCGGGAGGGAAA
CGATGGAGAAGCATGTCTTCTCCTCTTTGCAGACAGCTGGCTCACTAACT
CCCCTCCATCTCTTCCTTCTCCTTCCCCCCCGTCTCTCCCTTCCTCCTTA
AATTCCTAGCTACTCAAGCGCTGCAAGAACGACTTACCACCACCACCGCC
CGCCTGAGTCACGTCGAGGCCGGTAGGTGGTGGGAAAGAAACCTAGAGAA
AGAAAAGGAGGGAGGAAGGGAGGGGGGAAGGGGGGGAGGGAGGGAGGGAG
GAAGAGAAAGAGGTTTGACTGCCCTCCACACGCTCTTCACTCAATTGTTT
CATTGTCCAACGCCAGAGGCCCTCTGTCTCCAGGAGAAGCTTACCTCTGC
CCTTATCGCGCGCCAAGACACCTCCATCCGCATTCTATCCCTGGAGGAGG
AAGCCGCAGCAACAGCAGTAATGGCAGCAACGGCAGCAGCAGAGACCATA
CGGCGACAGGAAGGGGAGGTGCAAAGCTTGGAGACAGCCAACAAAAAGGT
AAGCTCGGAGCTGTCAAAAATGAAGAAGATAACCGGCGCGGAAGACAAGC
ATGACCTCTCCCTCCTTCCTCTCCCATTCGTCGCCCAATTGCTTGTCTCT
CATTTCTCTTCTCCTTTCTTTTTTCGTCCCTCCCTCCCTCCTTTCCTCGT
CTACAGAGGGAGGGAGTATATATTACCAAACTCTGTGTCCTCAAGAGGAA
GACTGGGGTCTTGTCCTTTTCATGTCACGACGAACTTTCCCTCCCTCCCT
CTTTCTATGCTTCGTTCCATCTTTAGGGGGGCAACAGACATGCGCCTCTT
GCTGAGGCCAACTCCCTCATTCAGCGCCTCGAAGCTTCCCTCAAGAGCAA
GATGGAGACAGAGACCGCTCAGACGCAGCAGATTACAGCTGTCACTGGCA
TTGCCAAGGTATGCCTTGCCCTCCTTCCCTCCCTCCCTCGCTCGCTCCCC
CCTCCATACACCAATCCGTAATCTGTCTACCCTTCGCTCCTCCTCCCCCT
TTCTCCTTCCCTATCCCTCAGGCCCTCGAGGCACAGCTCAACGAAGAGAT
TGCCTTTCGCGTCATGCTTGAAGATCGTTACCGTGAGCTTTTTGGCCGTG
TCTCGTCCCTTAAGCACGTTGCGCCTATCTCTTCCTCTTTGACTACCTTG
TCTTCGTCCTCGCTCTCCCTTCTTCCCTCCTCCTCATCCTTGGCGAGGAT
CCCCCCTCCCCCCATGGCCCCCTCCTCTTGCCCTCGGCCTTGATCTTTCC
ATTCAACAAGAGAGCAATGGGGACAAAAATGACGCAGCCTGTGGCGCACG
GATGACGACCGGGACCCAACGAAAGGGGGATGGGAGTCAAAAAGGGAGGA
AGGAGAGAGAGGGTGTTGTGCTCTTCTTTCTCTCCTGCCAAAAAGGGAGG
AGTATATTCAAAAGAGCGGGGCACCACAATACCCTCCCAAGTCCCTACAA
TCATCATTCCATGCAACACATCGGCCCCCGAACTGAGCCCCCTCCCCCTT
CCGACCGAGAAGCACAATGAGAACAAAGAATATGGGAAAAAATCTCCGCT
GAAGAAAAGCCACTATTGCTGATACCGCAAGGAGAAATGTTGGGGTTAAG
TTCGGCAGGTGATGCGGACGCAGAGGAGCTTGCCTACCCTGTGATCTCCT
CTATGATTCCCCTCCTCCTGACCCTGTATGCGCCATCCGAGGGCTTTGCT
GGTGAAAAACCTGCCACAGCCATTTAAAACTCGGCAAAAATAAGGGAAGA
ATGTACAACAATTTATTGTTGAAGGCGTTCTCTCGTTTGTAATCCTGAGA
GGAGGCACGCTTGTGTAAACACTTGCGTTTGCATTTGTCTGCAGATAGGT
TGCACGCGATAATTTTAGGATTGTAGGAAACTACAGGAAAAACTATCGCT
ACCTCTACCCTAACATCTCCCCGGTTGAGGCAAAGCTGTAACTATGGGGT
TACCACGTACACCACACCAAACGATATCCTATCAAAGCAAGGGGTTCGAG
AAAATGGGGAAACACTTCATTATTCTGGGGTTTCAGCCCAAGTAGAAGCC
CAAATAATTACGTCTCTTTTTGATGGGCCAGACTTGGACCCTAGGATTGT
ACGCATACATGCATACATACGGCTCGATCTAATGACAGCGCTACCGCCAG
CCAGTGCAGTGATCAAGGTGACATCCTGAAGGTTTGGATGCAGTGCTCAC
AAGTACACCGTACATTATGGACGCCTTTCGCTTCTTTCGGTATTTAATGT
ACGTGTATTTATACACC
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Coding sequence (CDS) from alignment at chr20:792530..796346-

>NO20G02520.1 ID=NO20G02520.1|Name=NO20G02520.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr20:792530..796346- (Nannochloropsis oceanica)
ATGAAGAGAAGTACCGCATCTATTGTCGTGGCCGCCAAAATGCCCAGCTC
GCCAAGCTCCCCTCAGATAATCACCAGGCGCTCCAGCTGTGACTCCCAAG
TAGAAGCCGCCCGTCGCCATGCCACGGCCGCGGGTTTATTGGAGAGTATC
GTGGAGGGAATGCAAATCAAGGTCTCGGCCTTGCTTCTCGAGAATGAGGA
ATCCCAAGAAGCGGCGCTGACGGCCGAGGTGCACATTGACGACCTCAAGT
CCTTCGTCGCCCAGCGTCAGTTCCGTATTAAGGAACTGAAGAAGAGCAAG
GAAGCTCTAGAGAAGGAATTAGAAGAGGCGATGGCCACAGTCACGACCAG
GGGAACCGAGCTTCAACTTCTAACGAAGGAGTATGCAGCCCTGCAGAATG
TTCTGGAGACGGAGAAGACCAGTGCCACGACCGCCCAAGCCCAGCTGGAG
GAGATGCTGGCAGCAGCGGAGAGCAGTAGAAATGAAGAGGTGGAAAAAAT
GAAGAAGCAGGAACAGGAACGACGCCTGCTTCAGACGCGTTTGGCGGCAG
TGGAGGAGGAGATGAGGGGGAGGGAGGAGGAGGTGGTGAGGGGAGAGGAG
GAAAGGAGGAGGCTACAGGAGCGCATCGCGGAGATGGAGGAAGCTACTCA
AGCGCTGCAAGAACGACTTACCACCACCACCGCCCGCCTGAGTCACGTCG
AGGCCGAGGCCCTCTGTCTCCAGGAGAAGCTTACCTCTGCCCTTATCGCG
CGCCAAGACACCTCCATCCGCATTCTATCCCTGGAGGAGGAAGCCGCAGC
AACAGCAGTAATGGCAGCAACGGCAGCAGCAGAGACCATACGGCGACAGG
AAGGGGAGGTGCAAAGCTTGGAGACAGCCAACAAAAAGGGGGGCAACAGA
CATGCGCCTCTTGCTGAGGCCAACTCCCTCATTCAGCGCCTCGAAGCTTC
CCTCAAGAGCAAGATGGAGACAGAGACCGCTCAGACGCAGCAGATTACAG
CTGTCACTGGCATTGCCAAGGCCCTCGAGGCACAGCTCAACGAAGAGATT
GCCTTTCGCGTCATGCTTGAAGATCGTTACCGTGAGCTTTTTGGCCGTGT
CTCGTCCCTTAAGCACGTTGCGCCTATCTCTTCCTCTTTGACTACCTTGT
CTTCGTCCTCGCTCTCCCTTCTTCCCTCCTCCTCATCCTTGGCGAGGATC
CCCCCTCCCCCCATGGCCCCCTCCTCTTGCCCTCGGCCTTGA
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Synonyms
Publications