NO20G02380.2, NO20G02380.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02380.2
Unique NameNO20G02380.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length738
Alignment locationchr20:719685..721020 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:719685..721020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02380.2 vs.
Match: EWM21993.1 (nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 248.8 bits (634), Expect = 1.000e-62
Identity = 118/146 (80.82%), Postives = 130/146 (89.04%), Query Frame = 0 
Query:    1 MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGYYE--------AGETYAENAGREVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDSLYATRKYLEYMKEK 139
            MRKERLLHRSTYIFARNSQG++YVQKRTM+KDYCPGYYE        AGETYAENA RE EEELGIPP+A K HLFTFLY+DER+RVFGDAWEVVWDG L LQ EEVESVHPMTL+EVF RVEAGD+FTPDSLYATRKYL++++EK
Sbjct:   27 MRKERLLHRSTYIFARNSQGEYYVQKRTMLKDYCPGYYEVVAGGVVGAGETYAENADREAEEELGIPPSAGKKHLFTFLYQDERIRVFGDAWEVVWDGALTLQKEEVESVHPMTLEEVFIRVEAGDKFTPDSLYATRKYLDFLREK 172
The following BLAST results are available for this feature:
BLAST of NO20G02380.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21993.11.000e-6280.82nudix hydrolase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02380NO20G02380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02380.2NO20G02380.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02380.2.cds1NO20G02380.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02380.2.cds2NO20G02380.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02380.2.cds3NO20G02380.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02380.2.cds4NO20G02380.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02380.2.cds5NO20G02380.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02380.2 ID=NO20G02380.2|Name=NO20G02380.2|organism=Nannochloropsis oceanica|type=mRNA|length=738bp
AACTACAGCAACGACCGACGAGGACACTGGAAGCCAGAGCGATACAGCCA
GGTTCATGTCGCTTTCTGCAGACGAAATCGTAAGTCTTGGCGTTTTGCGT
GTGGTTCTTGCTCTCCCTCCCTCTCCCCTTTCTCACACTCCATCCCTCAC
TACAGGTCGACATTGTCGATGAGAACAACCAGGTCTTGCGGCAAGAACGG
CGGGCGGTGATGCGGAAAGAGCGTCTCCTTCACCGGTCCACCTACATCTT
CGCCAGGAACAGCCAAGGGCAGTTCTACGTGCAGAAGCGTACAATGATCA
AGGATTATTGCCCGGGTTACTACGAAGCAGGCGAAACATACGCGGAGAAT
GCAGGCCGCGAGGTGGAGGAAGAGCTGGGGATACCACCCACGGCGCCCAA
GGCACATTTGTTCACTTTCCTGTACGAAGACGAGAGGTTGAGGGTCTTTG
GCGATGCCTGGGAGGTGGTTTGGGACGGGGAGTTGAAGCTACAGCCGGAA
GAAGTGGAGAGCGTCCATCCTATGACTTTGGACGAGGTCTTCGCCCGCGT
CGAGGCTGGCGACCAGTTCACGCCCGACTCTCTTTATGCGACACGGAAAT
ATCTGGAGTACATGAAGGAGAAGAGTGTAGGTGGGGACGAGGGAGGGAAG
GAGTGAAGGAACGAGGGAGGGAACGAGGGAGGGAAAGCCTGTCTGATCAG
AGGAGTCGACAACATCGATAAAGCTAAGATGAGGCCCA
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protein sequence of NO20G02380.2

>NO20G02380.2-protein ID=NO20G02380.2-protein|Name=NO20G02380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGYYEAGETYAENAGR
EVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVE
SVHPMTLDEVFARVEAGDQFTPDSLYATRKYLEYMKEKSVGGDEGGKE*
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mRNA from alignment at chr20:719685..721020-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02380.2 ID=NO20G02380.2|Name=NO20G02380.2|organism=Nannochloropsis oceanica|type=mRNA|length=1336bp|location=Sequence derived from alignment at chr20:719685..721020- (Nannochloropsis oceanica)
AACTACAGCAACGACCGACGAGGACACTGGAAGCCAGAGCGATACAGCCA
GGTTCATGTCGCTTTCTGCAGACGAAATCGTAAGTCTTGGCGTTTTGCGT
GTGGTTCTTGCTCTCCCTCCCTCTCCCCTTTCTCACACTCCATCCCTCAC
TACAGGTCGACATTGTCGATGAGAACAACCAGGTCTTGCGGCAAGAACGG
CGGGCGGTGATGGTACGTGTTTGGCGTAAGCTTCTTTTTCGCTCCCTACC
TCCCCCTCACCACACCTTCCTTCTTTCCTCCTGTCCTCCCCATCTTCCCA
CACAGCGGAAAGAGCGTCTCCTTCACCGGTCCACCTACATCTTCGCCAGG
AACAGCCAAGGGCAGTTCTACGTGCAGAAGCGTACAATGATCAAGGATTA
TTGCCCGGGTTACTACGAAGTAGTGGCGGGGGGGTGGTGGGCGTGAGTGA
AGGAGGGAGGGAGGAAGGAAAGGAAGTGAAGGAGGGGTGGGGGGAGGGGC
AGATGCCTTCAATCGGTGGCAGAGTTGTGTATGTCTAGTGCTTTAGATGT
GTCTGTGCGCATTAGACGATAACAACCTCCCTTTCCTCTCACACTTTTCA
TATCCTCTCTGTCTCCCTCTTCCCAGGCAGGCGAAACATACGCGGAGAAT
GCAGGCCGCGAGGTGGAGGAAGAGCTGGGGATACCACCCACGGCGCCCAA
GGCACATTTGTTCACTTTCCTGTACGAAGACGAGAGGTTGAGGGTCTTTG
GCGATGCCTGGGAGGTGGTTTGGGACGGGGAGTTGAAGCTACAGCCGGTG
AGAGAGGGAGGGAGGGAGGAAGGGAGGAGGGAGGGAGGGAGGAAAGGAGG
AGGGAGGAAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GAGTATGCTTCTTGTACTGTGTGTGCATCTTTCCCTCTATTTCATCCTCA
TCCCTCCCTCCCTCCATATTTCATTACTCCTTCTTTAAGGAAGAAGTGGA
GAGCGTCCATCCTATGACTTTGGACGAGGTCTTCGCCCGCGTCGAGGTAT
GTTTCCATCCTACAACCCCTTCCTCCGTCCCTTCCTCCCTCCCTCCATCC
CCTCCTTTACGATCTTGTCTCCCTCCCTTCCTTCCTCCCATCCTCCCGTT
AGGCTGGCGACCAGTTCACGCCCGACTCTCTTTATGCGACACGGAAATAT
CTGGAGTACATGAAGGAGAAGAGTGTAGGTGGGGACGAGGGAGGGAAGGA
GTGAAGGAACGAGGGAGGGAACGAGGGAGGGAAAGCCTGTCTGATCAGAG
GAGTCGACAACATCGATAAAGCTAAGATGAGGCCCA
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Coding sequence (CDS) from alignment at chr20:719685..721020-

>NO20G02380.2 ID=NO20G02380.2|Name=NO20G02380.2|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at chr20:719685..721020- (Nannochloropsis oceanica)
ATGCGGAAAGAGCGTCTCCTTCACCGGTCCACCTACATCTTCGCCAGGAA
CAGCCAAGGGCAGTTCTACGTGCAGAAGCGTACAATGATCAAGGATTATT
GCCCGGGTTACTACGAAGCAGGCGAAACATACGCGGAGAATGCAGGCCGC
GAGGTGGAGGAAGAGCTGGGGATACCACCCACGGCGCCCAAGGCACATTT
GTTCACTTTCCTGTACGAAGACGAGAGGTTGAGGGTCTTTGGCGATGCCT
GGGAGGTGGTTTGGGACGGGGAGTTGAAGCTACAGCCGGAAGAAGTGGAG
AGCGTCCATCCTATGACTTTGGACGAGGTCTTCGCCCGCGTCGAGGCTGG
CGACCAGTTCACGCCCGACTCTCTTTATGCGACACGGAAATATCTGGAGT
ACATGAAGGAGAAGAGTGTAGGTGGGGACGAGGGAGGGAAGGAGTGA
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Synonyms
Publications