NO20G02380, NO20G02380 (gene) Nannochloropsis oceanica

Overview
NameNO20G02380
Unique NameNO20G02380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1336
Alignment locationchr20:719685..721020 -

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Properties
Property NameValue
DescriptionNudix hydrolase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:719685..721020 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR015797NUDIX_hydrolase_dom-like
IPR000086NUDIX_hydrolase_dom
Homology
BLAST of NO20G02380 vs. NCBI_GenBank
Match: EWM21993.1 (nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 248.8 bits (634), Expect = 1.000e-62
Identity = 118/146 (80.82%), Postives = 130/146 (89.04%), Query Frame = 0
Query:    1 MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGYYE--------AGETYAENAGREVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDSLYATRKYLEYMKEK 139
            MRKERLLHRSTYIFARNSQG++YVQKRTM+KDYCPGYYE        AGETYAENA RE EEELGIPP+A K HLFTFLY+DER+RVFGDAWEVVWDG L LQ EEVESVHPMTL+EVF RVEAGD+FTPDSLYATRKYL++++EK
Sbjct:   27 MRKERLLHRSTYIFARNSQGEYYVQKRTMLKDYCPGYYEVVAGGVVGAGETYAENADREAEEELGIPPSAGKKHLFTFLYQDERIRVFGDAWEVVWDGALTLQKEEVESVHPMTLEEVFIRVEAGDKFTPDSLYATRKYLDFLREK 172          
BLAST of NO20G02380 vs. NCBI_GenBank
Match: EWM21994.1 (nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 248.8 bits (634), Expect = 1.000e-62
Identity = 118/146 (80.82%), Postives = 130/146 (89.04%), Query Frame = 0
Query:    1 MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGYYE--------AGETYAENAGREVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDSLYATRKYLEYMKEK 139
            MRKERLLHRSTYIFARNSQG++YVQKRTM+KDYCPGYYE        AGETYAENA RE EEELGIPP+A K HLFTFLY+DER+RVFGDAWEVVWDG L LQ EEVESVHPMTL+EVF RVEAGD+FTPDSLYATRKYL++++EK
Sbjct:    1 MRKERLLHRSTYIFARNSQGEYYVQKRTMLKDYCPGYYEVVAGGVVGAGETYAENADREAEEELGIPPSAGKKHLFTFLYQDERIRVFGDAWEVVWDGALTLQKEEVESVHPMTLEEVFIRVEAGDKFTPDSLYATRKYLDFLREK 146          
BLAST of NO20G02380 vs. NCBI_GenBank
Match: XP_005854504.1 (nudix hydrolase [Nannochloropsis gaditana CCMP526] >EKU21858.1 nudix hydrolase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 247.3 bits (630), Expect = 3.000e-62
Identity = 117/146 (80.14%), Postives = 130/146 (89.04%), Query Frame = 0
Query:    1 MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGYYE--------AGETYAENAGREVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDSLYATRKYLEYMKEK 139
            MRKERLLHRSTYIFARNSQG++YVQKRTM+KDYCPGYYE        AGETYAENA RE EEELGIPP+A K HLFTFLY+DE++RVFGDAWEVVWDG L LQ EEVESVHPMTL+EVF RVEAGD+FTPDSLYATRKYL++++EK
Sbjct:    1 MRKERLLHRSTYIFARNSQGEYYVQKRTMLKDYCPGYYEVVAGGVVGAGETYAENADREAEEELGIPPSAGKKHLFTFLYQDEQIRVFGDAWEVVWDGALTLQKEEVESVHPMTLEEVFIRVEAGDKFTPDSLYATRKYLDFLREK 146          
BLAST of NO20G02380 vs. NCBI_GenBank
Match: GAX93557.1 (Hypothetical protein PINS_001464 [Pythium insidiosum])

HSP 1 Score: 132.5 bits (332), Expect = 1.100e-27
Identity = 69/145 (47.59%), Postives = 92/145 (63.45%), Query Frame = 0
Query:    1 MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGYYEA--------GETYAENAGREVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDSLYATRKYLEYMKE 138
            MR   L HR+TYI  +NS+G+FYVQ+RTMIKDYCPGY +         GET+ EN  RE EEE+G+    P   L  F Y D+   V+G  +E  WDG LKLQPEEV+ V  MT +E+ AR    ++FTPD ++A   YL+ +++
Sbjct:  403 MRHFHLPHRATYIVTKNSKGKFYVQRRTMIKDYCPGYLDPMAGGVVQFGETFEENCIREAEEEMGV-VGVPFKDLGLFYYADDNTVVWGGLFECTWDGPLKLQPEEVDEVLEMTAEEILAR---RNEFTPDGIFAFEHYLKQVQQ 543          
BLAST of NO20G02380 vs. NCBI_GenBank
Match: OQR81416.1 (hypothetical protein THRCLA_11752 [Thraustotheca clavata])

HSP 1 Score: 132.1 bits (331), Expect = 1.400e-27
Identity = 70/144 (48.61%), Postives = 94/144 (65.28%), Query Frame = 0
Query:    1 MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGYYEA--------GETYAENAGREVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDSLYATRKYLEYMK 137
            MR   L HR+TYI  RNS+G+FYVQ+RT+IKDYCPG+ +         GE++ ENA RE  EE+GI  T P  ++ TF Y+D R  V+G  +E V+DG+L LQPEEV  V  M+ +E+ AR    D+FTPD ++A   YL + K
Sbjct:  207 MRVYNLPHRATYIVIRNSKGEFYVQRRTLIKDYCPGFLDPMAGGVVQFGESFQENAQREAAEEMGIVNT-PLTYITTFFYKDGRSAVWGGMFECVYDGQLTLQPEEVSEVLLMSGEEILAR---KDEFTPDGIHALEIYLNHKK 346          
BLAST of NO20G02380 vs. NCBI_GenBank
Match: XP_008862477.1 (hypothetical protein H310_01202 [Aphanomyces invadans] >ETW08672.1 hypothetical protein H310_01202 [Aphanomyces invadans])

HSP 1 Score: 131.3 bits (329), Expect = 2.400e-27
Identity = 69/142 (48.59%), Postives = 93/142 (65.49%), Query Frame = 0
Query:    1 MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGY--------YEAGETYAENAGREVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDSLYATRKYLEY 135
            MR   L HR+TYI  RNS G FYVQ+RTMIKDYCPG+         +AGE+Y +NA RE EEE+G+    P  ++ TFLY +    V+G  +E V+DG+LKLQPEEV  V  M+  ++ AR    ++FTPD ++A R YL++
Sbjct:   36 MRVFTLPHRATYIVIRNSAGDFYVQRRTMIKDYCPGFLDPMAGGVVQAGESYEDNAIREAEEEMGV-SGVPLTYVTTFLYNESYTVVWGGMFECVYDGQLKLQPEEVSEVLIMSAADIMAR---ANEFTPDGIFAMRLYLDW 173          
BLAST of NO20G02380 vs. NCBI_GenBank
Match: XP_009821664.1 (hypothetical protein H257_00608 [Aphanomyces astaci] >ETV89264.1 hypothetical protein H257_00608 [Aphanomyces astaci])

HSP 1 Score: 130.2 bits (326), Expect = 5.400e-27
Identity = 70/141 (49.65%), Postives = 90/141 (63.83%), Query Frame = 0
Query:    1 MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGY--------YEAGETYAENAGREVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDSLYATRKYLE 134
            MR   L HR+TYI  RNS G FYVQ+RT+IKDYCPG+         +AGE+Y +NA REV+EE+G+    P   + TF Y+D    V+G  +E V+DG L LQPEEV  V  M+  ++ AR    D+FTPD L+A R YLE
Sbjct:   46 MRVFSLPHRATYIVIRNSAGDFYVQRRTLIKDYCPGFLDPMAGGVVQAGESYEDNALREVKEEMGV-SGVPLTFVCTFFYQDASTVVWGGMFECVYDGALTLQPEEVSQVLVMSASDIIAR---ADEFTPDGLFAMRLYLE 182          
BLAST of NO20G02380 vs. NCBI_GenBank
Match: OQR94516.1 (hypothetical protein ACHHYP_01258 [Achlya hypogyna])

HSP 1 Score: 129.8 bits (325), Expect = 7.000e-27
Identity = 71/145 (48.97%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    1 MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGYYEA--------GETYAENAGREVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDSLYATRKYLEYMKE 138
            MR   L HRSTYI  RNS+G FYVQ+RT+IKDYCPGY +         GET+AENA RE  EE+GI  T P  ++ TF Y+D    V+G  +E  +DG+L LQPEEV  V  M+  E+ AR     +FTPD ++A   YL+  +E
Sbjct:   36 MRVFNLPHRSTYIVIRNSKGDFYVQRRTLIKDYCPGYLDPMAGGVVQFGETFAENAEREAAEEMGIHNT-PLTYVTTFQYKDGHSNVWGGMFECTYDGQLTLQPEEVSEVLVMSATEILARKA---EFTPDGIHALELYLKAKQE 176          
BLAST of NO20G02380 vs. NCBI_GenBank
Match: XP_009532665.1 (hypothetical protein PHYSODRAFT_317448 [Phytophthora sojae] >EGZ12332.1 hypothetical protein PHYSODRAFT_317448 [Phytophthora sojae])

HSP 1 Score: 126.3 bits (316), Expect = 7.800e-26
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 0
Query:    1 MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGYYEA--------GETYAENAGREVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDSLYATRKYLEYMK 137
            MR   L HR++YI  +NS G+FYVQ+RTMIKDYCPG  +         GE    NA RE EEE+G+  T P  +L TF Y D+R RV+G  ++  +DG L LQ EEV+ V  MT DE+ AR +   +FTPD ++A  KYL++++
Sbjct:   27 MRAFNLPHRASYIVIKNSSGKFYVQRRTMIKDYCPGMLDPMTGGVVQFGEPMDVNAEREAEEEMGVKNT-PLRYLTTFYYGDDRSRVWGGLFDCTFDGPLVLQEEEVDEVLTMTADEILARRK---EFTPDGIFAFEKYLKFIE 166          
BLAST of NO20G02380 vs. NCBI_GenBank
Match: XP_012195932.1 (hypothetical protein SPRG_01981 [Saprolegnia parasitica CBS 223.65] >KDO33169.1 hypothetical protein SPRG_01981 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 126.3 bits (316), Expect = 7.800e-26
Identity = 69/140 (49.29%), Postives = 88/140 (62.86%), Query Frame = 0
Query:    1 MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGYYEA--------GETYAENAGREVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDSLYATRKYL 133
            MR   L HR+TYI  RNS G FYVQ+RT+IKDYCPG+ +         GET+ ENA REV EE+GI  T P  ++ TF Y++    V+G  +E  +DGEL LQPEEV  V  M+  E+ +R    D+FTPD +YA   YL
Sbjct:   39 MRVFNLPHRATYIVIRNSSGDFYVQRRTLIKDYCPGFLDPMAGGVVQFGETFEENAEREVAEEMGITNT-PLTYVTTFPYKNGDSNVWGGMFECTFDGELTLQPEEVSEVLVMSAAEILSR---KDEFTPDGIYALELYL 174          
The following BLAST results are available for this feature:
BLAST of NO20G02380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21993.11.000e-6280.82nudix hydrolase [Nannochloropsis gaditana][more]
EWM21994.11.000e-6280.82nudix hydrolase [Nannochloropsis gaditana][more]
XP_005854504.13.000e-6280.14nudix hydrolase [Nannochloropsis gaditana CCMP526]... [more]
GAX93557.11.100e-2747.59Hypothetical protein PINS_001464 [Pythium insidios... [more]
OQR81416.11.400e-2748.61hypothetical protein THRCLA_11752 [Thraustotheca c... [more]
XP_008862477.12.400e-2748.59hypothetical protein H310_01202 [Aphanomyces invad... [more]
XP_009821664.15.400e-2749.65hypothetical protein H257_00608 [Aphanomyces astac... [more]
OQR94516.17.000e-2748.97hypothetical protein ACHHYP_01258 [Achlya hypogyna... [more]
XP_009532665.17.800e-2647.22hypothetical protein PHYSODRAFT_317448 [Phytophtho... [more]
XP_012195932.17.800e-2649.29hypothetical protein SPRG_01981 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02380.2NO20G02380.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G02380.1NO20G02380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100670g2gene8442Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02380.2NO20G02380.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G02380.1NO20G02380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02380 ID=NO20G02380|Name=NO20G02380|organism=Nannochloropsis oceanica|type=gene|length=1336bp
AACTACAGCAACGACCGACGAGGACACTGGAAGCCAGAGCGATACAGCCA
GGTTCATGTCGCTTTCTGCAGACGAAATCGTAAGTCTTGGCGTTTTGCGT
GTGGTTCTTGCTCTCCCTCCCTCTCCCCTTTCTCACACTCCATCCCTCAC
TACAGGTCGACATTGTCGATGAGAACAACCAGGTCTTGCGGCAAGAACGG
CGGGCGGTGATGgtacgtgtttggcgtaagcttctttttcgctccctacc
tccccctcaccacaccttccttctttcctcctgtcctccccatcttccca
cacagCGGAAAGAGCGTCTCCTTCACCGGTCCACCTACATCTTCGCCAGG
AACAGCCAAGGGCAGTTCTACGTGCAGAAGCGTACAATGATCAAGGATTA
TTGCCCGGGTTACTACGAAgtagtggcgggggggtggtgggcgtgagtga
aggagggagggaggaaggaaaggaagtgaaggaggggtggggggaggggc
agatgccttcaatcggtggcagagttgtgtatgtctagtgctttagatgt
gtctgtgcgcattagacgataacaacctccctttcctctcacacttttca
tatcctctctgtctccctcttcccagGCAGGCGAAACATACGCGGAGAAT
GCAGGCCGCGAGGTGGAGGAAGAGCTGGGGATACCACCCACGGCGCCCAA
GGCACATTTGTTCACTTTCCTGTACGAAGACGAGAGGTTGAGGGTCTTTG
GCGATGCCTGGGAGGTGGTTTGGGACGGGGAGTTGAAGCTACAGCCGgtg
agagagggagggagggaggaagggaggagggagggagggaggaaaggagg
agggaggaaaggagggagggagggagggagggagggagggagggagggag
gagtatgcttcttgtactgtgtgtgcatctttccctctatttcatcctca
tccctccctccctccatatttcattactccttctttaagGAAGAAGTGGA
GAGCGTCCATCCTATGACTTTGGACGAGGTCTTCGCCCGCGTCGAGgtat
gtttccatcctacaaccccttcctccgtcccttcctccctccctccatcc
cctcctttacgatcttgtctccctcccttccttcctcccatcctcccgtt
agGCTGGCGACCAGTTCACGCCCGACTCTCTTTATGCGACACGGAAATAT
CTGGAGTACATGAAGGAGAAGAGTGTAGGTGGGGACGAGGGAGGGAAGGA
GTGAAGGAACGAGGGAGGGAACGAGGGAGGGAAAGCCTGTCTGATCAGAG
GAGTCGACAACATCGATAAAGCTAAGATGAGGCCCA
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protein sequence of NO20G02380.2

>NO20G02380.2-protein ID=NO20G02380.2-protein|Name=NO20G02380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MRKERLLHRSTYIFARNSQGQFYVQKRTMIKDYCPGYYEAGETYAENAGR
EVEEELGIPPTAPKAHLFTFLYEDERLRVFGDAWEVVWDGELKLQPEEVE
SVHPMTLDEVFARVEAGDQFTPDSLYATRKYLEYMKEKSVGGDEGGKE*
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protein sequence of NO20G02380.1

>NO20G02380.1-protein ID=NO20G02380.1-protein|Name=NO20G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MSLSADEIVDIVDENNQVLRQERRAVMRKERLLHRSTYIFARNSQGQFYV
QKRTMIKDYCPGYYEAGETYAENAGREVEEELGIPPTAPKAHLFTFLYED
ERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDS
LYATRKYLEYMKEKSVGGDEGGKE*
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Synonyms
Publications