NO20G02070.1, NO20G02070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02070.1
Unique NameNO20G02070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1913
Alignment locationchr20:615211..617123 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:615211..617123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02070.1 vs.
Match: EWM22035.1 (ribosomal protein l32 [Nannochloropsis gaditana])

HSP 1 Score: 257.7 bits (657), Expect = 2.100e-65
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 0 
Query:    1 MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRRFKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED 137
            MAKV PLVKPKSIVKKRTKKFGRFQADRFMRI+RTSWRKPKGIDGRARRRFKG+TL+PNIGYGSDAKTRNLLPNGFYKFVVNNP+EVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED
Sbjct:    1 MAKVTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED 136
The following BLAST results are available for this feature:
BLAST of NO20G02070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22035.12.100e-6596.32ribosomal protein l32 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02070NO20G02070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02070.1NO20G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02070.1.cds1NO20G02070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02070.1 ID=NO20G02070.1|Name=NO20G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1913bp
AGGGCAGAGTTGGGCCTCCTCCGGTCATTCCTCTTCCGTCATCCTTCACC
CTTCCTTCTCGCCACCATCCATCCACTGTCCCTGCCTGCCCCAAGCGAAC
AGTCCTTGCGCGGTCTTCAAGCATCCGGTAGTACCTGTCATATCTGGGCA
TATTTGAGGAGGCTGCGGGGAGGCATGGTTGGTAGTGACCTGGTCTCCCA
GTCCTCTCTATTTCCTCTCCATCCACAACGCCTGAGTGGCTGGAGAGAAG
AAAGGGGTGTGATGAGCGAAGGAGAGGGAGTATTATAAGATGTTGTTTCG
AAGCTCACATATTTACCTTCACACGTACCAAACAGGAAAACAAGAGTGAA
AATAATTGCAAGTGTTGTGTGAAGGCGGCGTGGCAGGCCGGAGCTGGATG
GTGTTGGTGTCTTCGCGTTTGGAGCACGAGGTGGGAGGCAACACGGTTTA
GGCGGATGGAGGGGTTGCTTCTTGCCGCGTGGAGCATGGGAGCACGGCAA
GACGGGTGCATGGCAGTGGTTTGCTCCTACTGCTACTGAGCATGGTGATG
GTTGGTTGGTGTTGTGGCCAGTGTGGAGTGGGTTCTGGTGTGGCAGCAAC
ACGGCGTGAGGGGAGGACAGGGCAAAGTCTAAATTGTGGCTGTCGTCGGT
AAATGCTGGCAAAGACCCGCGGACTGCGGTTGCGCTGCTATTACTGTATT
GTTTCATATCAGTCCAGGCCCATGTCCGCTGTGTTGGTAAGGGATTATGC
AGGCGGCAGCAGCAGCGGGGAGTGGGGAGGGCAAGCGATGCATCGAAGTG
ATGCTCTCATCGTCTTCATCCTGTGATGGACCTGGCGGACCATTTGTAGG
AATCAGCACCAGCAACGAGTGAAACCAAGGGCTCTGGGGTAGCAGCCTTT
TGTGATCGTCGGGAGACGGGCGGATGCATTGTGTAACCCCGGCGCCCGTG
ATACTTCCTAGATGGATAAGGAGTCGCTCTCTACCGCTTGTGTGTACTTT
TTGGGGGAACGCACTTGCGTCATCCATTCTTTGCGACAACACCACCATCA
TTGTTGTCTGTAGACGTTAATTGCCCTGGGTAAAAGATCAGCATCATTTT
TTGCCTTTGCACTGTGATTGCTCCCAGGCACATGTCACGGCCTGGCCCGT
CGGTCATACGCGCTCATCACCATTCTTACACAACCGCGTCATCTCCCACG
CTCCACTCACCCTCCTTCCTTCCCCTTCTCCACTCACTATAAACAGCGCA
TATTTTCTTTTAACCATCAGCACCTAGTCAGCCATGGCCAAGGTAGCCCC
CCTCGTCAAGCCCAAGAGCATCGTAAAGAAGCGCACGAAGAAGTTCGGAC
GCTTCCAAGCCGACCGCTTCATGCGCATCTCCCGCACCTCCTGGCGCAAG
CCCAAGGGTATCGATGGCCGGGCTCGTCGTCGCTTCAAGGGCGCCACGCT
TCTGCCCAACATCGGGTATGGGTCTGATGCCAAGACCCGTAACCTGTTGC
CGAACGGTTTCTACAAGTTCGTGGTCAACAACCCCCAGGAGGTGGAGCTC
CTGCTGTTGCACAACCGCAAGTATTCTGCCGAGATCGCGCACAACGTCAG
CAGCCGTAAGCGCAAGGCGATTGTGGAGAAGGCGGAACAGCTGGGCGTGA
AGGTCACCAACGCCGCGGCCAAGCTTCGGGCAGAGGAGGACGAGTAAATG
TCAGGGCCTAGTGTGTGTAGGGGGGTTTAGTGAGAAAGTCGGGAGGGGGC
AGTGAGAAAACGACGGGCAAGCTAGTGACGACGCGTGGAAGGGAAAGTGT
CTCTTGAAAGAAAGAAAAAGGAAACCTGAACACGCAGCGAAAAAGGCTCG
ACCCGTGGGACCACTGCTTACGGGGAACGGGAAAAATAGGGTTGTCACAT
AGATCAAATTTCG
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protein sequence of NO20G02070.1

>NO20G02070.1-protein ID=NO20G02070.1-protein|Name=NO20G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRR
FKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAE
IAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDE*
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mRNA from alignment at chr20:615211..617123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02070.1 ID=NO20G02070.1|Name=NO20G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1913bp|location=Sequence derived from alignment at chr20:615211..617123+ (Nannochloropsis oceanica)
AGGGCAGAGTTGGGCCTCCTCCGGTCATTCCTCTTCCGTCATCCTTCACC
CTTCCTTCTCGCCACCATCCATCCACTGTCCCTGCCTGCCCCAAGCGAAC
AGTCCTTGCGCGGTCTTCAAGCATCCGGTAGTACCTGTCATATCTGGGCA
TATTTGAGGAGGCTGCGGGGAGGCATGGTTGGTAGTGACCTGGTCTCCCA
GTCCTCTCTATTTCCTCTCCATCCACAACGCCTGAGTGGCTGGAGAGAAG
AAAGGGGTGTGATGAGCGAAGGAGAGGGAGTATTATAAGATGTTGTTTCG
AAGCTCACATATTTACCTTCACACGTACCAAACAGGAAAACAAGAGTGAA
AATAATTGCAAGTGTTGTGTGAAGGCGGCGTGGCAGGCCGGAGCTGGATG
GTGTTGGTGTCTTCGCGTTTGGAGCACGAGGTGGGAGGCAACACGGTTTA
GGCGGATGGAGGGGTTGCTTCTTGCCGCGTGGAGCATGGGAGCACGGCAA
GACGGGTGCATGGCAGTGGTTTGCTCCTACTGCTACTGAGCATGGTGATG
GTTGGTTGGTGTTGTGGCCAGTGTGGAGTGGGTTCTGGTGTGGCAGCAAC
ACGGCGTGAGGGGAGGACAGGGCAAAGTCTAAATTGTGGCTGTCGTCGGT
AAATGCTGGCAAAGACCCGCGGACTGCGGTTGCGCTGCTATTACTGTATT
GTTTCATATCAGTCCAGGCCCATGTCCGCTGTGTTGGTAAGGGATTATGC
AGGCGGCAGCAGCAGCGGGGAGTGGGGAGGGCAAGCGATGCATCGAAGTG
ATGCTCTCATCGTCTTCATCCTGTGATGGACCTGGCGGACCATTTGTAGG
AATCAGCACCAGCAACGAGTGAAACCAAGGGCTCTGGGGTAGCAGCCTTT
TGTGATCGTCGGGAGACGGGCGGATGCATTGTGTAACCCCGGCGCCCGTG
ATACTTCCTAGATGGATAAGGAGTCGCTCTCTACCGCTTGTGTGTACTTT
TTGGGGGAACGCACTTGCGTCATCCATTCTTTGCGACAACACCACCATCA
TTGTTGTCTGTAGACGTTAATTGCCCTGGGTAAAAGATCAGCATCATTTT
TTGCCTTTGCACTGTGATTGCTCCCAGGCACATGTCACGGCCTGGCCCGT
CGGTCATACGCGCTCATCACCATTCTTACACAACCGCGTCATCTCCCACG
CTCCACTCACCCTCCTTCCTTCCCCTTCTCCACTCACTATAAACAGCGCA
TATTTTCTTTTAACCATCAGCACCTAGTCAGCCATGGCCAAGGTAGCCCC
CCTCGTCAAGCCCAAGAGCATCGTAAAGAAGCGCACGAAGAAGTTCGGAC
GCTTCCAAGCCGACCGCTTCATGCGCATCTCCCGCACCTCCTGGCGCAAG
CCCAAGGGTATCGATGGCCGGGCTCGTCGTCGCTTCAAGGGCGCCACGCT
TCTGCCCAACATCGGGTATGGGTCTGATGCCAAGACCCGTAACCTGTTGC
CGAACGGTTTCTACAAGTTCGTGGTCAACAACCCCCAGGAGGTGGAGCTC
CTGCTGTTGCACAACCGCAAGTATTCTGCCGAGATCGCGCACAACGTCAG
CAGCCGTAAGCGCAAGGCGATTGTGGAGAAGGCGGAACAGCTGGGCGTGA
AGGTCACCAACGCCGCGGCCAAGCTTCGGGCAGAGGAGGACGAGTAAATG
TCAGGGCCTAGTGTGTGTAGGGGGGTTTAGTGAGAAAGTCGGGAGGGGGC
AGTGAGAAAACGACGGGCAAGCTAGTGACGACGCGTGGAAGGGAAAGTGT
CTCTTGAAAGAAAGAAAAAGGAAACCTGAACACGCAGCGAAAAAGGCTCG
ACCCGTGGGACCACTGCTTACGGGGAACGGGAAAAATAGGGTTGTCACAT
AGATCAAATTTCG
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Coding sequence (CDS) from alignment at chr20:615211..617123+

>NO20G02070.1 ID=NO20G02070.1|Name=NO20G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at chr20:615211..617123+ (Nannochloropsis oceanica)
ATGGCCAAGGTAGCCCCCCTCGTCAAGCCCAAGAGCATCGTAAAGAAGCG
CACGAAGAAGTTCGGACGCTTCCAAGCCGACCGCTTCATGCGCATCTCCC
GCACCTCCTGGCGCAAGCCCAAGGGTATCGATGGCCGGGCTCGTCGTCGC
TTCAAGGGCGCCACGCTTCTGCCCAACATCGGGTATGGGTCTGATGCCAA
GACCCGTAACCTGTTGCCGAACGGTTTCTACAAGTTCGTGGTCAACAACC
CCCAGGAGGTGGAGCTCCTGCTGTTGCACAACCGCAAGTATTCTGCCGAG
ATCGCGCACAACGTCAGCAGCCGTAAGCGCAAGGCGATTGTGGAGAAGGC
GGAACAGCTGGGCGTGAAGGTCACCAACGCCGCGGCCAAGCTTCGGGCAG
AGGAGGACGAGTAA
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Synonyms
Publications