NO20G02070, NO20G02070 (gene) Nannochloropsis oceanica

Overview
NameNO20G02070
Unique NameNO20G02070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1913
Alignment locationchr20:615211..617123 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein l32
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:615211..617123 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR036351Ribosomal_L32e_sf
IPR001515Ribosomal_L32e
Homology
[Close]
BLAST of NO20G02070 vs. NCBI_GenBank
Match: EWM22035.1 (ribosomal protein l32 [Nannochloropsis gaditana])

HSP 1 Score: 257.7 bits (657), Expect = 2.100e-65
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 0 
Query:    1 MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRRFKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED 137
            MAKV PLVKPKSIVKKRTKKFGRFQADRFMRI+RTSWRKPKGIDGRARRRFKG+TL+PNIGYGSDAKTRNLLPNGFYKFVVNNP+EVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED
Sbjct:    1 MAKVTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED 136
[Close]
BLAST of NO20G02070 vs. NCBI_GenBank
Match: CBN78007.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 193.0 bits (489), Expect = 6.300e-46
Identity = 98/136 (72.06%), Postives = 114/136 (83.82%), Query Frame = 0 
Query:    1 MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRRFKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED 137
            M  V PL K  ++VKKRTKKF R Q DRFMRI  +SWRKPKGIDGR RRRFKG   +PN+GYGSD +TRN+LPNGFYKF+V+N +E+ELLL+HNRKY+AEIAHNVSSRKRK IVE+A QL ++VTNA AKL AEED
Sbjct:    1 MGGVQPLNK-VNVVKKRTKKFARHQTDRFMRIKNSSWRKPKGIDGRVRRRFKGCLPMPNVGYGSDKRTRNILPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEED 135
[Close]
BLAST of NO20G02070 vs. NCBI_GenBank
Match: GAX94334.1 (60S ribosomal protein L32-1 [Pythium insidiosum])

HSP 1 Score: 179.9 bits (455), Expect = 5.500e-42
Identity = 92/137 (67.15%), Postives = 112/137 (81.75%), Query Frame = 0 
Query:    1 MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRRFKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDE 138
            M +V P+V+PK IVKK+  KF R Q+DRF R+   SWR+PKGIDGR RR+FKGA  +PN+GYGS+ KTR+LLPNGF KFVVNN  E+ELLL+HNRKY AEIAHNVS RKR+ IVE+AEQL ++VTN  A++RAEE E
Sbjct:    1 MVQVTPVVRPK-IVKKKVTKFKRHQSDRFKRVPE-SWRRPKGIDGRVRRKFKGAIKMPNVGYGSNKKTRHLLPNGFLKFVVNNVAELELLLMHNRKYCAEIAHNVSGRKRREIVERAEQLNIRVTNPNARVRAEESE 135
[Close]
BLAST of NO20G02070 vs. NCBI_GenBank
Match: XP_002292943.1 (RL32, ribosomal protein 32 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >EED89404.1 RL32, ribosomal protein 32 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 179.1 bits (453), Expect = 9.400e-42
Identity = 93/136 (68.38%), Postives = 111/136 (81.62%), Query Frame = 0 
Query:    1 MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRRFKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED 137
            MA   PL K K+I+KKRTKKF R Q+D+FMRI R+SWRKPKGIDGR RRRFKGA  +P+IGYGSD KTRN+LP GF   VVNN  E+E+L++HNR Y+A +  +VSSR R+ IVE+AEQL V+VTNAAAKLRAEED
Sbjct:    1 MAGTQPLCK-KTIIKKRTKKFARHQSDQFMRIQRSSWRKPKGIDGRVRRRFKGAVPMPSIGYGSDKKTRNVLPCGFRSVVVNNVGELEMLMMHNRTYAATVGKSVSSRVRREIVERAEQLAVRVTNAAAKLRAEED 135
[Close]
BLAST of NO20G02070 vs. NCBI_GenBank
Match: OEU20376.1 (ribosomal protein L32e [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 179.1 bits (453), Expect = 9.400e-42
Identity = 92/136 (67.65%), Postives = 111/136 (81.62%), Query Frame = 0 
Query:    1 MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRRFKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED 137
            MA   P+ K K+IVKKRTKKF R Q+D+FMRI  +SWRKPKGIDGR RRRFKGA  +P+IGYGSD  TRN+ PNGF   VVNN  E+E+L++HNR Y+A +AH+VSSR RK IV++AEQL ++VTNAAAKLRAEED
Sbjct:    1 MAGPTPINK-KTIVKKRTKKFARHQSDQFMRIRDSSWRKPKGIDGRVRRRFKGAVPMPSIGYGSDKATRNICPNGFKSVVVNNVSELEMLMMHNRTYAATVAHSVSSRIRKEIVQRAEQLAIRVTNAAAKLRAEED 135
[Close]
BLAST of NO20G02070 vs. NCBI_GenBank
Match: XP_008913469.1 (hypothetical protein PPTG_17566 [Phytophthora parasitica INRA-310] >ETI34837.1 hypothetical protein F443_18736 [Phytophthora parasitica P1569] >ETK75122.1 hypothetical protein L915_18218 [Phytophthora parasitica] >ETL28548.1 hypothetical protein L916_18122 [Phytophthora parasitica] >ETL81802.1 hypothetical protein L917_17936 [Phytophthora parasitica] >ETM35010.1 hypothetical protein L914_18022 [Phytophthora parasitica] >ETN01142.1 hypothetical protein PPTG_17566 [Phytophthora parasitica INRA-310] >ETO63580.1 hypothetical protein F444_18734 [Phytophthora parasitica P1976] >ETP04677.1 hypothetical protein F441_18595 [Phytophthora parasitica CJ01A1] >ETP32825.1 hypothetical protein F442_18549 [Phytophthora parasitica P10297] >KUF92850.1 hypothetical protein AM588_10005267 [Phytophthora nicotianae] >OWZ08282.1 60S ribosomal protein L32-1 [Phytophthora megakarya] >POM71538.1 60S ribosomal protein L32-1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 177.6 bits (449), Expect = 2.700e-41
Identity = 91/137 (66.42%), Postives = 113/137 (82.48%), Query Frame = 0 
Query:    1 MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRRFKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDE 138
            M +V P+V+PK IVKK+  KF R Q++RF R+   SWR+PKGIDGR RR+FKGA  +PNIGYGS+ KTR+LLPNGF KFVVNN  E+E+LL+HNRKY AEIAHNVS RKR+ I+E+AEQL V+VTN  A++RAEE+E
Sbjct:    1 MVQVTPVVRPK-IVKKKVTKFKRHQSNRFKRVPE-SWRRPKGIDGRVRRKFKGAIKMPNIGYGSNKKTRHLLPNGFLKFVVNNVAELEVLLMHNRKYCAEIAHNVSGRKRREIIERAEQLNVRVTNPNARVRAEENE 135
[Close]
BLAST of NO20G02070 vs. NCBI_GenBank
Match: XP_002901678.1 (60S ribosomal protein L32-1 [Phytophthora infestans T30-4] >EEY58734.1 60S ribosomal protein L32-1 [Phytophthora infestans T30-4])

HSP 1 Score: 177.6 bits (449), Expect = 2.700e-41
Identity = 91/137 (66.42%), Postives = 113/137 (82.48%), Query Frame = 0 
Query:    1 MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRRFKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDE 138
            M +V P+V+PK IVKK+  KF R Q++RF R+   SWR+PKGIDGR RR+FKGA  +PNIGYGS+ KTR+LLPNGF KFVVNN  E+E+LL+HNRKY AEIAHNVS RKR+ I+E+AEQL V+VTN  A++RAEE+E
Sbjct:    1 MVQVTPVVRPK-IVKKKVTKFKRHQSNRFKRVPE-SWRRPKGIDGRVRRKFKGAIKMPNIGYGSNKKTRHLLPNGFLKFVVNNVAELEVLLMHNRKYCAEIAHNVSGRKRREIIERAEQLNVRVTNPNARVRAEENE 135
[Close]
BLAST of NO20G02070 vs. NCBI_GenBank
Match: KUF90166.1 (Cytochrome c oxidase assembly protein COX11 [Phytophthora nicotianae])

HSP 1 Score: 177.6 bits (449), Expect = 2.700e-41
Identity = 91/137 (66.42%), Postives = 113/137 (82.48%), Query Frame = 0 
Query:    1 MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRRFKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDE 138
            M +V P+V+PK IVKK+  KF R Q++RF R+   SWR+PKGIDGR RR+FKGA  +PNIGYGS+ KTR+LLPNGF KFVVNN  E+E+LL+HNRKY AEIAHNVS RKR+ I+E+AEQL V+VTN  A++RAEE+E
Sbjct:    1 MVQVTPVVRPK-IVKKKVTKFKRHQSNRFKRVPE-SWRRPKGIDGRVRRKFKGAIKMPNIGYGSNKKTRHLLPNGFLKFVVNNVAELEVLLMHNRKYCAEIAHNVSGRKRREIIERAEQLNVRVTNPNARVRAEENE 135
[Close]
BLAST of NO20G02070 vs. NCBI_GenBank
Match: XP_009516675.1 (hypothetical protein PHYSODRAFT_353635 [Phytophthora sojae] >EGZ29400.1 hypothetical protein PHYSODRAFT_353635 [Phytophthora sojae])

HSP 1 Score: 176.8 bits (447), Expect = 4.600e-41
Identity = 89/137 (64.96%), Postives = 113/137 (82.48%), Query Frame = 0 
Query:    1 MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRRFKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDE 138
            M +V P+++PK IVKK+  KF R Q++RF R+   SWR+PKGIDGR RR+FKGA  +PN+GYGS+ KTR+LLPNGF KFVVNN  E+E+LL+HNRKY AEIAHNVS RKR+ I+E+AEQL V+VTN  A++RAEE+E
Sbjct:    1 MVQVTPVIRPK-IVKKKVTKFKRHQSNRFKRVPE-SWRRPKGIDGRVRRKFKGAIKMPNVGYGSNKKTRHLLPNGFLKFVVNNVAELEVLLMHNRKYCAEIAHNVSGRKRREIIERAEQLNVRVTNPNARVRAEENE 135
[Close]
BLAST of NO20G02070 vs. NCBI_GenBank
Match: XP_009033175.1 (hypothetical protein AURANDRAFT_36203 [Aureococcus anophagefferens] >EGB12081.1 hypothetical protein AURANDRAFT_36203 [Aureococcus anophagefferens])

HSP 1 Score: 176.0 bits (445), Expect = 7.900e-41
Identity = 89/135 (65.93%), Postives = 111/135 (82.22%), Query Frame = 0 
Query:    1 MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRRFKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEE 136
            M KV  + KP +IVKKRTKKF R  ++RFM+I  +SWRK  GID R RRRFKG   +P IGYGSD KTR+++P+GFYKFVVNN +E+ELL++HNR Y+AEIAH+VS +KRKAI+E+AEQL +KVTNA A+LRAEE
Sbjct:    1 MVKVTAMSKP-TIVKKRTKKFARHFSNRFMKIRNSSWRKIHGIDSRVRRRFKGTIPMPKIGYGSDKKTRHMMPSGFYKFVVNNVKELELLMMHNRTYAAEIAHSVSGQKRKAIIERAEQLNIKVTNANARLRAEE 134
The following BLAST results are available for this feature:
BLAST of NO20G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22035.12.100e-6596.32ribosomal protein l32 [Nannochloropsis gaditana][more]
CBN78007.16.300e-4672.06conserved unknown protein [Ectocarpus siliculosus][more]
GAX94334.15.500e-4267.1560S ribosomal protein L32-1 [Pythium insidiosum][more]
XP_002292943.19.400e-4268.38RL32, ribosomal protein 32 60S large ribosomal sub... [more]
OEU20376.19.400e-4267.65ribosomal protein L32e [Fragilariopsis cylindrus C... [more]
XP_008913469.12.700e-4166.42hypothetical protein PPTG_17566 [Phytophthora para... [more]
XP_002901678.12.700e-4166.4260S ribosomal protein L32-1 [Phytophthora infestan... [more]
KUF90166.12.700e-4166.42Cytochrome c oxidase assembly protein COX11 [Phyto... [more]
XP_009516675.14.600e-4164.96hypothetical protein PHYSODRAFT_353635 [Phytophtho... [more]
XP_009033175.17.900e-4165.93hypothetical protein AURANDRAFT_36203 [Aureococcus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002752NSK002752Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02070.1NO20G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640391gene_6432Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100052g38gene8407Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02070.1NO20G02070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02070 ID=NO20G02070|Name=NO20G02070|organism=Nannochloropsis oceanica|type=gene|length=1913bp
AGGGCAGAGTTGGGCCTCCTCCGGTCATTCCTCTTCCGTCATCCTTCACC
CTTCCTTCTCGCCACCATCCATCCACTGTCCCTGCCTGCCCCAAGCGAAC
AGTCCTTGCGCGGTCTTCAAGCATCCGGTAGTACCTGTCATATCTGGGCA
TATTTGAGGAGGCTGCGGGGAGGCATGGTTGGTAGTGACCTGGTCTCCCA
GTCCTCTCTATTTCCTCTCCATCCACAACGCCTGAGTGGCTGGAGAGAAG
AAAGGGGTGTGATGAGCGAAGGAGAGGGAGTATTATAAGATGTTGTTTCG
AAGCTCACATATTTACCTTCACACGTACCAAACAGGAAAACAAGAGTGAA
AATAATTGCAAGTGTTGTGTGAAGGCGGCGTGGCAGGCCGGAGCTGGATG
GTGTTGGTGTCTTCGCGTTTGGAGCACGAGGTGGGAGGCAACACGGTTTA
GGCGGATGGAGGGGTTGCTTCTTGCCGCGTGGAGCATGGGAGCACGGCAA
GACGGGTGCATGGCAGTGGTTTGCTCCTACTGCTACTGAGCATGGTGATG
GTTGGTTGGTGTTGTGGCCAGTGTGGAGTGGGTTCTGGTGTGGCAGCAAC
ACGGCGTGAGGGGAGGACAGGGCAAAGTCTAAATTGTGGCTGTCGTCGGT
AAATGCTGGCAAAGACCCGCGGACTGCGGTTGCGCTGCTATTACTGTATT
GTTTCATATCAGTCCAGGCCCATGTCCGCTGTGTTGGTAAGGGATTATGC
AGGCGGCAGCAGCAGCGGGGAGTGGGGAGGGCAAGCGATGCATCGAAGTG
ATGCTCTCATCGTCTTCATCCTGTGATGGACCTGGCGGACCATTTGTAGG
AATCAGCACCAGCAACGAGTGAAACCAAGGGCTCTGGGGTAGCAGCCTTT
TGTGATCGTCGGGAGACGGGCGGATGCATTGTGTAACCCCGGCGCCCGTG
ATACTTCCTAGATGGATAAGGAGTCGCTCTCTACCGCTTGTGTGTACTTT
TTGGGGGAACGCACTTGCGTCATCCATTCTTTGCGACAACACCACCATCA
TTGTTGTCTGTAGACGTTAATTGCCCTGGGTAAAAGATCAGCATCATTTT
TTGCCTTTGCACTGTGATTGCTCCCAGGCACATGTCACGGCCTGGCCCGT
CGGTCATACGCGCTCATCACCATTCTTACACAACCGCGTCATCTCCCACG
CTCCACTCACCCTCCTTCCTTCCCCTTCTCCACTCACTATAAACAGCGCA
TATTTTCTTTTAACCATCAGCACCTAGTCAGCCATGGCCAAGGTAGCCCC
CCTCGTCAAGCCCAAGAGCATCGTAAAGAAGCGCACGAAGAAGTTCGGAC
GCTTCCAAGCCGACCGCTTCATGCGCATCTCCCGCACCTCCTGGCGCAAG
CCCAAGGGTATCGATGGCCGGGCTCGTCGTCGCTTCAAGGGCGCCACGCT
TCTGCCCAACATCGGGTATGGGTCTGATGCCAAGACCCGTAACCTGTTGC
CGAACGGTTTCTACAAGTTCGTGGTCAACAACCCCCAGGAGGTGGAGCTC
CTGCTGTTGCACAACCGCAAGTATTCTGCCGAGATCGCGCACAACGTCAG
CAGCCGTAAGCGCAAGGCGATTGTGGAGAAGGCGGAACAGCTGGGCGTGA
AGGTCACCAACGCCGCGGCCAAGCTTCGGGCAGAGGAGGACGAGTAAATG
TCAGGGCCTAGTGTGTGTAGGGGGGTTTAGTGAGAAAGTCGGGAGGGGGC
AGTGAGAAAACGACGGGCAAGCTAGTGACGACGCGTGGAAGGGAAAGTGT
CTCTTGAAAGAAAGAAAAAGGAAACCTGAACACGCAGCGAAAAAGGCTCG
ACCCGTGGGACCACTGCTTACGGGGAACGGGAAAAATAGGGTTGTCACAT
AGATCAAATTTCG
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protein sequence of NO20G02070.1

>NO20G02070.1-protein ID=NO20G02070.1-protein|Name=NO20G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MAKVAPLVKPKSIVKKRTKKFGRFQADRFMRISRTSWRKPKGIDGRARRR
FKGATLLPNIGYGSDAKTRNLLPNGFYKFVVNNPQEVELLLLHNRKYSAE
IAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDE*
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Synonyms
Publications