NO20G02050, NO20G02050 (gene) Nannochloropsis oceanica

Overview
NameNO20G02050
Unique NameNO20G02050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length477
Alignment locationchr20:604358..604834 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:604358..604834 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G02050 vs. NCBI_GenBank
Match: EWM22062.1 (hypothetical protein Naga_100052g34 [Nannochloropsis gaditana])

HSP 1 Score: 140.6 bits (353), Expect = 4.300e-30
Identity = 85/156 (54.49%), Postives = 105/156 (67.31%), Query Frame = 0 
Query:    1 MHGVTLVALARGVTRQAANLL---PRTAVITTSV--------LPGLRPFSTAAASFEGTTAPIPQSNLRHAVFSLIHGAKGKPLHNREIFKALQETLPPTSPLKERLTLTFLKTKVLRQLREKSHIRSVAVWTEGKKRASYGYVVSKLPKEYKTTK 146
            M+G +L   ARG+T +  N +     T   T SV        L   R FS A  +        PQS LRHA  SL++ A+GKPLHNR+I+K LQ++LP  S LKERLTLT+LKTK+LR LREK +IRSVAVWTEGKKRASYGYVVS+LPK++K +K
Sbjct:    1 MYGASL-CYARGMTWRTINTIAPQQTTKAGTLSVPRRRLDTALYAYRLFSEARYNSPRPDTATPQSTLRHATLSLLNEAEGKPLHNRDIYKGLQDSLPAESHLKERLTLTYLKTKILRHLREKKYIRSVAVWTEGKKRASYGYVVSRLPKDFKESK 155
The following BLAST results are available for this feature:
BLAST of NO20G02050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22062.14.300e-3054.49hypothetical protein Naga_100052g34 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002746NSK002746Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02050.1NO20G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594974gene_6428Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02050.1NO20G02050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02050 ID=NO20G02050|Name=NO20G02050|organism=Nannochloropsis oceanica|type=gene|length=477bp
ATGCATGGTGTCACCCTCGTGGCCCTGGCCCGCGGTGTCACCCGACAAGC
CGCAAATCTCTTGCCTCGCACCGCCGTCATCACGACCTCTGTCCTTCCCG
GACTACGCCCTTTCTCCACCGCTGCCGCCAGTTTTGAGGGTACCACCGCT
CCGATACCTCAGTCTAATTTGCGACATGCCGTGTTCTCGCTCATCCACGG
GGCAAAAGGCAAGCCACTACACAATCGCGAAATCTTCAAAGCATTGCAAG
AGACGCTTCCGCCGACATCACCGCTAAAGGAGCGCCTAACACTAACCTTT
CTGAAGACCAAAGTCCTGCGACAACTACGGGAGAAGAGCCATATTCGGTC
CGTGGCAGTCTGGACCGAGGGCAAGAAGCGGGCCTCGTACGGTTATGTGG
TATCAAAGCTGCCAAAGGAGTACAAGACGACGAAGCCTATTGCAGAGGTA
GTGACGGAAGCAAAGGAGAGTAAATAG
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protein sequence of NO20G02050.1

>NO20G02050.1-protein ID=NO20G02050.1-protein|Name=NO20G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MHGVTLVALARGVTRQAANLLPRTAVITTSVLPGLRPFSTAAASFEGTTA
PIPQSNLRHAVFSLIHGAKGKPLHNREIFKALQETLPPTSPLKERLTLTF
LKTKVLRQLREKSHIRSVAVWTEGKKRASYGYVVSKLPKEYKTTKPIAEV
VTEAKESK*
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Synonyms
Publications