NO20G01150.1, NO20G01150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01150.1
Unique NameNO20G01150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1878
Alignment locationchr20:357523..359594 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:357523..359594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01150.1 vs.
Match: EWM22113.1 (hypothetical protein Naga_100060g9 [Nannochloropsis gaditana])

HSP 1 Score: 300.1 bits (767), Expect = 9.600e-78
Identity = 191/364 (52.47%), Postives = 237/364 (65.11%), Query Frame = 0 
Query:    4 AQRKLAQRALSVFLLASLLLGTASAAAGGFLFKGK---GGTYIKKESDICDQSAVPSFLRMTLRHRGGETSSVAKPAEHNASAAGGNVVLA-SEADDSEEEEIENNEKYVVAADTPVEGGQEAAAEAAKAAAAAAVAKEGEDSFHDTVEEAAESDNAAPTAAAATKNEEED---DDDAEKAEVAELAALASVTEAISGPEAVRRKRAETGDNLKKDKYNAKMQWVITNKMKKILAEELHYEMEEVEAMMPDVAAVVINKHLERPKRGMPPEWRRDFHLRQRGWKRAQASLKHALRRVMEEPQSLIRGVGTAAVAILGAGLAKRWVEGRMEGGGGEEDEWEWVEMTPWEEMVDRIQSLLPGRGGG 361
            A+R +   A+S+ L+A+   G  ++AA  FL K +        KK S + D+S VP  +R+ L++RGGE+SS+ K AEHNASA   +   +  + D SEEEE     +    AD P E  +  AA    A A    A EGED      E+ A  D  AP  A   + EE     + +  + E    AA+A+V++ +SGPE VRR+RAETG N+KKDKYNAKMQW+ITNKMKK+L EELHYE  EVEAMMPDVAAVVINKHLERPKRGMP EWR+DFHLR+RGW   QA L  A RR++EEP+ L+R VG  AVA +GAG A+RW+E R    G EE+EWEWVEMTPWEE VDR Q  LPGRG G
Sbjct:    8 ARRIVPALAISILLVAN---GGTASAARSFLLKSQHTFAKASNKKGSHMHDESKVPVIVRLALQYRGGESSSLTKAAEHNASATDESAASSLRDVDASEEEEGSQGVEGEAEADPPTEEDEGRAA----AGAPGEGAGEGED------EDDAFQDAVAPDVAPVAEKEEAKHAVEGEEGEEEDGAAAAVATVSQELSGPETVRRQRAETGGNMKKDKYNAKMQWLITNKMKKVLREELHYEAAEVEAMMPDVAAVVINKHLERPKRGMPAEWRKDFHLRRRGWDALQAGLVQAARRLVEEPRVLLRQVGLVAVAAVGAGAARRWMEARR--AGEEEEEWEWVEMTPWEEFVDRWQRRLPGRGRG 356
The following BLAST results are available for this feature:
BLAST of NO20G01150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22113.19.600e-7852.47hypothetical protein Naga_100060g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01150NO20G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01150.1NO20G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01150.1.cds1NO20G01150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01150.1.cds2NO20G01150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01150.1 ID=NO20G01150.1|Name=NO20G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp
TTGGGGAAGTGATTCTTAATGTTATTGCTGGGTTGTCGAATATGCGTAGT
TTATGTCCATGCGCATCGGTAATCGTGTGGTGGTAGCTCAAAGTCAAAAC
ACCGTTGTGTCGGGCGAGCTCAAGGGCCTTGCTTAGGTGTGGCTCTCTTG
ATTGAAGAGGTGGGTGCATGCGTTCGTGTGATATTTGCTATCGGTGTGGA
CGCTTTTAGAGAAAGCAACGCCATTTTTAGGTCATATACTTATCTCTTTA
GTTTGTAATTCGAATGCTTGGACAGGCCGGCTTTCTTGTCAATGTTTAGG
GCGCGCAAAGCCAAACTAGTATCCAGGTCCAAGTGCGCACATTTTTATCA
CTACTCTATTGCGCATATACACTACCAAAGCAAACAGGTGGGGGTCCAAA
CGACGCGACAACAACACCATGGTGGTGGCACAGCGGAAGCTTGCTCAAAG
GGCCTTGTCAGTTTTCCTGCTTGCCAGTTTGTTACTAGGCACAGCATCGG
CAGCAGCCGGGGGTTTCCTCTTCAAGGGCAAGGGGGGCACATACATCAAG
AAGGAGTCCGATATATGCGACCAGTCTGCCGTCCCAAGCTTTCTTCGTAT
GACCTTGCGACACCGTGGTGGCGAGACCTCGTCCGTAGCCAAGCCCGCGG
AGCACAACGCTAGTGCAGCTGGAGGTAACGTCGTCTTGGCCTCTGAAGCC
GACGACAGCGAGGAAGAAGAAATCGAGAATAATGAAAAATATGTGGTTGC
GGCGGATACCCCGGTAGAGGGAGGACAGGAGGCAGCGGCAGAAGCGGCAA
AAGCAGCAGCAGCAGCAGCAGTCGCAAAGGAGGGGGAGGACTCCTTCCAT
GACACCGTCGAGGAGGCAGCCGAGAGCGACAACGCAGCCCCCACGGCAGC
GGCAGCGACCAAAAACGAGGAAGAGGATGATGATGATGCAGAAAAGGCGG
AAGTTGCAGAGCTTGCTGCCCTCGCTTCGGTAACAGAGGCAATATCGGGA
CCGGAAGCAGTGCGGAGGAAGAGGGCAGAAACGGGGGATAACCTCAAAAA
GGACAAGTACAACGCTAAAATGCAATGGGTCATCACAAATAAAATGAAAA
AGATTTTAGCGGAGGAGTTGCATTACGAGATGGAAGAGGTGGAGGCGATG
ATGCCTGATGTGGCTGCTGTCGTAATTAATAAGCACTTGGAAAGGCCTAA
GCGGGGGATGCCGCCTGAATGGCGGAGGGACTTCCATCTACGACAAAGGG
GTTGGAAGAGGGCACAAGCATCTTTAAAGCACGCCTTGCGACGGGTCATG
GAGGAGCCCCAGTCATTGATCCGAGGGGTGGGAACAGCAGCAGTAGCGAT
ATTGGGGGCGGGGTTGGCGAAACGATGGGTGGAGGGGCGAATGGAGGGAG
GAGGGGGTGAGGAGGATGAGTGGGAGTGGGTCGAGATGACACCGTGGGAG
GAGATGGTCGATAGGATTCAAAGTCTGTTGCCGGGGCGAGGAGGAGGGAA
GATGTAGGGAGGAGGGAGGAAGGGAAGGTTTATGTAAGAGGAAGGGAGGA
TAAGTGCGTGTGTGGGGTACTAAAAGAAGGGAAGGTGGTAACACGAAGAA
GCGGCGGTGGAGAGAGGAAGAAAGTGAGAGAGGAGAAATGGACTGAAGGC
CTGTAGAGTTGTCATCGTCAAGTCGTGTCTGACAAGCAGAGAAAAGGAGA
AGGAGGGAGGGACTGAGGGGAGGGAAGGAGGTCGGTCTTACTTGACAAAC
GTGAAGAGGTGGGGAGGAGAGAAATAAAAGTGAGAAGCGGAAAATGCAAG
AACAGCTTTAAAAAAACACGGAGAACCAAAGAAAAGAATGATGAAAGAGG
AAACGAAGACGAATCAGACGAACCAAGA
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protein sequence of NO20G01150.1

>NO20G01150.1-protein ID=NO20G01150.1-protein|Name=NO20G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MVVAQRKLAQRALSVFLLASLLLGTASAAAGGFLFKGKGGTYIKKESDIC
DQSAVPSFLRMTLRHRGGETSSVAKPAEHNASAAGGNVVLASEADDSEEE
EIENNEKYVVAADTPVEGGQEAAAEAAKAAAAAAVAKEGEDSFHDTVEEA
AESDNAAPTAAAATKNEEEDDDDAEKAEVAELAALASVTEAISGPEAVRR
KRAETGDNLKKDKYNAKMQWVITNKMKKILAEELHYEMEEVEAMMPDVAA
VVINKHLERPKRGMPPEWRRDFHLRQRGWKRAQASLKHALRRVMEEPQSL
IRGVGTAAVAILGAGLAKRWVEGRMEGGGGEEDEWEWVEMTPWEEMVDRI
QSLLPGRGGGKM*
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mRNA from alignment at chr20:357523..359594+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01150.1 ID=NO20G01150.1|Name=NO20G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2072bp|location=Sequence derived from alignment at chr20:357523..359594+ (Nannochloropsis oceanica)
TTGGGGAAGTGATTCTTAATGTTATTGCTGGGTTGTCGAATATGCGTAGT
TTATGTCCATGCGCATCGGTAATCGTGTGGTGGTAGCTCAAAGTCAAAAC
ACCGTTGTGTCGGGCGAGCTCAAGGGCCTTGCTTAGGTGTGGCTCTCTTG
ATTGAAGAGGTGGGTGCATGCGTTCGTGTGATATTTGCTATCGGTGTGGA
CGCTTTTAGAGAAAGCAACGCCATTTTTAGGTCATATACTTATCTCTTTA
GTTTGTAATTCGAATGCTTGGACAGGCCGGCTTTCTTGTCAATGTTTAGG
GCGCGCAAAGCCAAACTAGTATCCAGGTCCAAGTGCGCACATTTTTATCA
CTACTCTATTGCGCATATACACTACCAAAGCAAACAGGTGGGGGTCCAAA
CGACGCGACAACAACACCATGGTGGTGGCACAGCGGAAGCTTGCTCAAAG
GGCCTTGTCAGTTTTCCTGCTTGCCAGTTTGTTACTAGGCACAGCATCGG
CAGCAGCCGGGGGTTTCCTCTTCAAGGGCAAGGGGGGCACATACATCAAG
AAGGAGTCCGATATATGCGACCAGTCTGCCGTCCCAAGCTTTCTTCGTAT
GACCTTGCGACACCGTGGTGGCGAGAGTAAGTGGCGGTGCAAGGGAGGCA
GGGAAGGAGGAATGATCGAATAGATGGGCCACGGTTGTGATGCTTGATCC
ATGTGTGAGTGCCCACCGAATTTGAATGCTCCCTCCCGTCAATCCTTGGG
AAAGAAAGGCGAACGAGTACTCGGTCTCATATTGATCGCCCAAAATACCA
AACAACCCCGGTCTTTACAGCCTCGTCCGTAGCCAAGCCCGCGGAGCACA
ACGCTAGTGCAGCTGGAGGTAACGTCGTCTTGGCCTCTGAAGCCGACGAC
AGCGAGGAAGAAGAAATCGAGAATAATGAAAAATATGTGGTTGCGGCGGA
TACCCCGGTAGAGGGAGGACAGGAGGCAGCGGCAGAAGCGGCAAAAGCAG
CAGCAGCAGCAGCAGTCGCAAAGGAGGGGGAGGACTCCTTCCATGACACC
GTCGAGGAGGCAGCCGAGAGCGACAACGCAGCCCCCACGGCAGCGGCAGC
GACCAAAAACGAGGAAGAGGATGATGATGATGCAGAAAAGGCGGAAGTTG
CAGAGCTTGCTGCCCTCGCTTCGGTAACAGAGGCAATATCGGGACCGGAA
GCAGTGCGGAGGAAGAGGGCAGAAACGGGGGATAACCTCAAAAAGGACAA
GTACAACGCTAAAATGCAATGGGTCATCACAAATAAAATGAAAAAGATTT
TAGCGGAGGAGTTGCATTACGAGATGGAAGAGGTGGAGGCGATGATGCCT
GATGTGGCTGCTGTCGTAATTAATAAGCACTTGGAAAGGCCTAAGCGGGG
GATGCCGCCTGAATGGCGGAGGGACTTCCATCTACGACAAAGGGGTTGGA
AGAGGGCACAAGCATCTTTAAAGCACGCCTTGCGACGGGTCATGGAGGAG
CCCCAGTCATTGATCCGAGGGGTGGGAACAGCAGCAGTAGCGATATTGGG
GGCGGGGTTGGCGAAACGATGGGTGGAGGGGCGAATGGAGGGAGGAGGGG
GTGAGGAGGATGAGTGGGAGTGGGTCGAGATGACACCGTGGGAGGAGATG
GTCGATAGGATTCAAAGTCTGTTGCCGGGGCGAGGAGGAGGGAAGATGTA
GGGAGGAGGGAGGAAGGGAAGGTTTATGTAAGAGGAAGGGAGGATAAGTG
CGTGTGTGGGGTACTAAAAGAAGGGAAGGTGGTAACACGAAGAAGCGGCG
GTGGAGAGAGGAAGAAAGTGAGAGAGGAGAAATGGACTGAAGGCCTGTAG
AGTTGTCATCGTCAAGTCGTGTCTGACAAGCAGAGAAAAGGAGAAGGAGG
GAGGGACTGAGGGGAGGGAAGGAGGTCGGTCTTACTTGACAAACGTGAAG
AGGTGGGGAGGAGAGAAATAAAAGTGAGAAGCGGAAAATGCAAGAACAGC
TTTAAAAAAACACGGAGAACCAAAGAAAAGAATGATGAAAGAGGAAACGA
AGACGAATCAGACGAACCAAGA
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Coding sequence (CDS) from alignment at chr20:357523..359594+

>NO20G01150.1 ID=NO20G01150.1|Name=NO20G01150.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr20:357523..359594+ (Nannochloropsis oceanica)
ATGGTGGTGGCACAGCGGAAGCTTGCTCAAAGGGCCTTGTCAGTTTTCCT
GCTTGCCAGTTTGTTACTAGGCACAGCATCGGCAGCAGCCGGGGGTTTCC
TCTTCAAGGGCAAGGGGGGCACATACATCAAGAAGGAGTCCGATATATGC
GACCAGTCTGCCGTCCCAAGCTTTCTTCGTATGACCTTGCGACACCGTGG
TGGCGAGACCTCGTCCGTAGCCAAGCCCGCGGAGCACAACGCTAGTGCAG
CTGGAGGTAACGTCGTCTTGGCCTCTGAAGCCGACGACAGCGAGGAAGAA
GAAATCGAGAATAATGAAAAATATGTGGTTGCGGCGGATACCCCGGTAGA
GGGAGGACAGGAGGCAGCGGCAGAAGCGGCAAAAGCAGCAGCAGCAGCAG
CAGTCGCAAAGGAGGGGGAGGACTCCTTCCATGACACCGTCGAGGAGGCA
GCCGAGAGCGACAACGCAGCCCCCACGGCAGCGGCAGCGACCAAAAACGA
GGAAGAGGATGATGATGATGCAGAAAAGGCGGAAGTTGCAGAGCTTGCTG
CCCTCGCTTCGGTAACAGAGGCAATATCGGGACCGGAAGCAGTGCGGAGG
AAGAGGGCAGAAACGGGGGATAACCTCAAAAAGGACAAGTACAACGCTAA
AATGCAATGGGTCATCACAAATAAAATGAAAAAGATTTTAGCGGAGGAGT
TGCATTACGAGATGGAAGAGGTGGAGGCGATGATGCCTGATGTGGCTGCT
GTCGTAATTAATAAGCACTTGGAAAGGCCTAAGCGGGGGATGCCGCCTGA
ATGGCGGAGGGACTTCCATCTACGACAAAGGGGTTGGAAGAGGGCACAAG
CATCTTTAAAGCACGCCTTGCGACGGGTCATGGAGGAGCCCCAGTCATTG
ATCCGAGGGGTGGGAACAGCAGCAGTAGCGATATTGGGGGCGGGGTTGGC
GAAACGATGGGTGGAGGGGCGAATGGAGGGAGGAGGGGGTGAGGAGGATG
AGTGGGAGTGGGTCGAGATGACACCGTGGGAGGAGATGGTCGATAGGATT
CAAAGTCTGTTGCCGGGGCGAGGAGGAGGGAAGATGTAG
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Synonyms
Publications