NO20G01150, NO20G01150 (gene) Nannochloropsis oceanica

Overview
NameNO20G01150
Unique NameNO20G01150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2072
Alignment locationchr20:357523..359594 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:357523..359594 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G01150 vs. NCBI_GenBank
Match: EWM22113.1 (hypothetical protein Naga_100060g9 [Nannochloropsis gaditana])

HSP 1 Score: 253.1 bits (645), Expect = 1.300e-63
Identity = 124/172 (72.09%), Postives = 141/172 (81.98%), Query Frame = 0 
Query:  189 TEAISGPEAVRRKRAETGDNLKKDKYNAKMQWVITNKMKKILAEELHYEMEEVEAMMPDVAAVVINKHLERPKRGMPPEWRRDFHLRQRGWKRAQASLKHALRRVMEEPQSLIRGVGTAAVAILGAGLAKRWVEGRMEGGGGEEDEWEWVEMTPWEEMVDRIQSLLPGRGGG 361
            ++ +SGPE VRR+RAETG N+KKDKYNAKMQW+ITNKMKK+L EELHYE  EVEAMMPDVAAVVINKHLERPKRGMP EWR+DFHLR+RGW   QA L  A RR++EEP+ L+R VG  AVA +GAG A+RW+E R    G EE+EWEWVEMTPWEE VDR Q  LPGRG G
Sbjct:  187 SQELSGPETVRRQRAETGGNMKKDKYNAKMQWLITNKMKKVLREELHYEAAEVEAMMPDVAAVVINKHLERPKRGMPAEWRKDFHLRRRGWDALQAGLVQAARRLVEEPRVLLRQVGLVAVAAVGAGAARRWMEARR--AGEEEEEWEWVEMTPWEEFVDRWQRRLPGRGRG 356
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BLAST of NO20G01150 vs. NCBI_GenBank
Match: CBJ28491.1 (hypothetical protein Esi_0107_0030 [Ectocarpus siliculosus])

HSP 1 Score: 69.7 bits (169), Expect = 2.100e-8
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 0 
Query:  212 DKYNAKMQWVITNKMKKILAEELHYEMEEVEAMMPDVAAVVINKHLERPKRGMPPEWRRDFHLRQRG 279
            D+YNA+MQ +IT  M+K+L +EL Y  +EV+ M P +AAVVI K L RP+ GMP  WRR   +RQ G
Sbjct:   68 DRYNARMQVIITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRS--IRQTG 132
The following BLAST results are available for this feature:
BLAST of NO20G01150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22113.11.300e-6372.09hypothetical protein Naga_100060g9 [Nannochloropsi... [more]
CBJ28491.12.100e-853.73hypothetical protein Esi_0107_0030 [Ectocarpus sil... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002644NSK002644Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01150.1NO20G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594609gene_6328Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100060g9gene8320Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01150.1NO20G01150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01150 ID=NO20G01150|Name=NO20G01150|organism=Nannochloropsis oceanica|type=gene|length=2072bp
TTGGGGAAGTGATTCTTAATGTTATTGCTGGGTTGTCGAATATGCGTAGT
TTATGTCCATGCGCATCGGTAATCGTGTGGTGGTAGCTCAAAGTCAAAAC
ACCGTTGTGTCGGGCGAGCTCAAGGGCCTTGCTTAGGTGTGGCTCTCTTG
ATTGAAGAGGTGGGTGCATGCGTTCGTGTGATATTTGCTATCGGTGTGGA
CGCTTTTAGAGAAAGCAACGCCATTTTTAGGTCATATACTTATCTCTTTA
GTTTGTAATTCGAATGCTTGGACAGGCCGGCTTTCTTGTCAATGTTTAGG
GCGCGCAAAGCCAAACTAGTATCCAGGTCCAAGTGCGCACATTTTTATCA
CTACTCTATTGCGCATATACACTACCAAAGCAAACAGGTGGGGGTCCAAA
CGACGCGACAACAACACCATGGTGGTGGCACAGCGGAAGCTTGCTCAAAG
GGCCTTGTCAGTTTTCCTGCTTGCCAGTTTGTTACTAGGCACAGCATCGG
CAGCAGCCGGGGGTTTCCTCTTCAAGGGCAAGGGGGGCACATACATCAAG
AAGGAGTCCGATATATGCGACCAGTCTGCCGTCCCAAGCTTTCTTCGTAT
GACCTTGCGACACCGTGGTGGCGAGAgtaagtggcggtgcaagggaggca
gggaaggaggaatgatcgaatagatgggccacggttgtgatgcttgatcc
atgtgtgagtgcccaccgaatttgaatgctccctcccgtcaatccttggg
aaagaaaggcgaacgagtactcggtctcatattgatcgcccaaaatacca
aacaaccccggtctttacagCCTCGTCCGTAGCCAAGCCCGCGGAGCACA
ACGCTAGTGCAGCTGGAGGTAACGTCGTCTTGGCCTCTGAAGCCGACGAC
AGCGAGGAAGAAGAAATCGAGAATAATGAAAAATATGTGGTTGCGGCGGA
TACCCCGGTAGAGGGAGGACAGGAGGCAGCGGCAGAAGCGGCAAAAGCAG
CAGCAGCAGCAGCAGTCGCAAAGGAGGGGGAGGACTCCTTCCATGACACC
GTCGAGGAGGCAGCCGAGAGCGACAACGCAGCCCCCACGGCAGCGGCAGC
GACCAAAAACGAGGAAGAGGATGATGATGATGCAGAAAAGGCGGAAGTTG
CAGAGCTTGCTGCCCTCGCTTCGGTAACAGAGGCAATATCGGGACCGGAA
GCAGTGCGGAGGAAGAGGGCAGAAACGGGGGATAACCTCAAAAAGGACAA
GTACAACGCTAAAATGCAATGGGTCATCACAAATAAAATGAAAAAGATTT
TAGCGGAGGAGTTGCATTACGAGATGGAAGAGGTGGAGGCGATGATGCCT
GATGTGGCTGCTGTCGTAATTAATAAGCACTTGGAAAGGCCTAAGCGGGG
GATGCCGCCTGAATGGCGGAGGGACTTCCATCTACGACAAAGGGGTTGGA
AGAGGGCACAAGCATCTTTAAAGCACGCCTTGCGACGGGTCATGGAGGAG
CCCCAGTCATTGATCCGAGGGGTGGGAACAGCAGCAGTAGCGATATTGGG
GGCGGGGTTGGCGAAACGATGGGTGGAGGGGCGAATGGAGGGAGGAGGGG
GTGAGGAGGATGAGTGGGAGTGGGTCGAGATGACACCGTGGGAGGAGATG
GTCGATAGGATTCAAAGTCTGTTGCCGGGGCGAGGAGGAGGGAAGATGTA
GGGAGGAGGGAGGAAGGGAAGGTTTATGTAAGAGGAAGGGAGGATAAGTG
CGTGTGTGGGGTACTAAAAGAAGGGAAGGTGGTAACACGAAGAAGCGGCG
GTGGAGAGAGGAAGAAAGTGAGAGAGGAGAAATGGACTGAAGGCCTGTAG
AGTTGTCATCGTCAAGTCGTGTCTGACAAGCAGAGAAAAGGAGAAGGAGG
GAGGGACTGAGGGGAGGGAAGGAGGTCGGTCTTACTTGACAAACGTGAAG
AGGTGGGGAGGAGAGAAATAAAAGTGAGAAGCGGAAAATGCAAGAACAGC
TTTAAAAAAACACGGAGAACCAAAGAAAAGAATGATGAAAGAGGAAACGA
AGACGAATCAGACGAACCAAGA
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protein sequence of NO20G01150.1

>NO20G01150.1-protein ID=NO20G01150.1-protein|Name=NO20G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MVVAQRKLAQRALSVFLLASLLLGTASAAAGGFLFKGKGGTYIKKESDIC
DQSAVPSFLRMTLRHRGGETSSVAKPAEHNASAAGGNVVLASEADDSEEE
EIENNEKYVVAADTPVEGGQEAAAEAAKAAAAAAVAKEGEDSFHDTVEEA
AESDNAAPTAAAATKNEEEDDDDAEKAEVAELAALASVTEAISGPEAVRR
KRAETGDNLKKDKYNAKMQWVITNKMKKILAEELHYEMEEVEAMMPDVAA
VVINKHLERPKRGMPPEWRRDFHLRQRGWKRAQASLKHALRRVMEEPQSL
IRGVGTAAVAILGAGLAKRWVEGRMEGGGGEEDEWEWVEMTPWEEMVDRI
QSLLPGRGGGKM*
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Synonyms
Publications