NO20G01070.1, NO20G01070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01070.1
Unique NameNO20G01070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length879
Alignment locationchr20:340211..341248 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:340211..341248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01070.1 vs.
Match: EWM22133.1 (nadh dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 394.0 bits (1011), Expect = 3.900e-106
Identity = 193/244 (79.10%), Postives = 216/244 (88.52%), Query Frame = 0 
Query:   47 MQSSLMATGRVVASRLRASVPSSGHVLTRGLSAPPQKPPPPPSPEELQKMVATSEAHVSQVRAGTMKTVQPHTVSDVPDLPTYLPENQEEMAVLNDQPANQRARKVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQSLAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKLKREGVKTKHFANQGYAASNWFQSLKYHGDGECEQHGPPQK 291
            MQSSLMA GR+  SRL+ + P++ H+  R LSAPPQKPPPPPSPEEL+KMV+ SE+HV ++RAGTMK VQP+ V+DVPDLPTYLP+ +EEMAVLN+QPANQRARKVTIRQKAQ+AMQS+ NKSYPW+I+W  QERWSNPLMGWTSTADPLSNQ LAFDTAEEAARFAKRQGW V IEP ISR+QVLGTKKYAFNFL EDVENKLKREG KTK F N GY ASNWFQ LKYHGDGECEQHGPP++
Sbjct:    1 MQSSLMACGRLGTSRLQVTAPATHHLWYRCLSAPPQKPPPPPSPEELEKMVSASESHVKEIRAGTMKKVQPYLVADVPDLPTYLPQKEEEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTKQFTNPGYTASNWFQPLKYHGDGECEQHGPPRE 244
The following BLAST results are available for this feature:
BLAST of NO20G01070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22133.13.900e-10679.10nadh dehydrogenase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01070NO20G01070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01070.1NO20G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01070.1.cds1NO20G01070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01070.1.cds2NO20G01070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01070.1 ID=NO20G01070.1|Name=NO20G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=879bp
ATGTCGCTACCGCACCCGTTGCCCGTTGCCTTGCTGTACGTTAGTGGGGC
AGATCCTACCCAGCTGGCTTGGCTTCCGAACCGACAAACAAAACAACGTG
CACGCACCTTTCCCTTTGTGAGCGCCCTTGCAGCCACCATGCAGAGCTCC
CTCATGGCAACCGGCCGAGTGGTAGCCTCGCGTCTCCGTGCCTCGGTGCC
CTCGTCTGGCCATGTCCTGACCCGCGGCCTCTCCGCCCCGCCCCAAAAGC
CTCCTCCTCCGCCCTCCCCCGAAGAGCTGCAAAAGATGGTCGCCACCTCC
GAGGCGCACGTCAGCCAAGTCCGCGCCGGGACCATGAAAACCGTGCAGCC
TCATACTGTCTCCGATGTTCCAGACCTGCCCACTTATCTCCCGGAAAACC
AAGAGGAAATGGCCGTCTTGAACGACCAACCCGCGAATCAAAGGGCCCGC
AAGGTCACCATCCGCCAAAAGGCTCAAAGCGCCATGCAATCCAGCCCCAA
CAAGTCCTACCCCTGGCACATCACTTGGGCACAGCAGGAACGCTGGTCCA
ATCCTTTAATGGGATGGACTTCAACTGCTGATCCCTTAAGTAACCAGTCA
CTCGCATTTGACACGGCTGAGGAGGCGGCTCGCTTTGCGAAGCGTCAGGG
GTGGGAAGTGCAGATTGAGCCAGAAATCAGTCGCAAGCAAGTGCTGGGGA
CGAAGAAGTATGCCTTCAATTTCTTGCAGGAAGACGTGGAAAACAAATTG
AAGAGGGAGGGAGTTAAGACGAAGCATTTTGCGAATCAAGGTTATGCGGC
CTCGAATTGGTTTCAGTCGTTGAAGTACCACGGGGATGGGGAGTGCGAAC
AGCATGGTCCCCCACAGAAGAAGAAGTAA
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protein sequence of NO20G01070.1

>NO20G01070.1-protein ID=NO20G01070.1-protein|Name=NO20G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MSLPHPLPVALLYVSGADPTQLAWLPNRQTKQRARTFPFVSALAATMQSS
LMATGRVVASRLRASVPSSGHVLTRGLSAPPQKPPPPPSPEELQKMVATS
EAHVSQVRAGTMKTVQPHTVSDVPDLPTYLPENQEEMAVLNDQPANQRAR
KVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQS
LAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKL
KREGVKTKHFANQGYAASNWFQSLKYHGDGECEQHGPPQKKK*
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mRNA from alignment at chr20:340211..341248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01070.1 ID=NO20G01070.1|Name=NO20G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp|location=Sequence derived from alignment at chr20:340211..341248- (Nannochloropsis oceanica)
ATGTCGCTACCGCACCCGTTGCCCGTTGCCTTGCTGTACGTTAGTGGGGC
AGATCCTACCCAGCTGGCTTGGCTTCCGAACCGACAAACAAAACAACGTG
CACGCACCTTTCCCTTTGTGAGGTTGGCTGTACATCTTTACGTTTCTCGT
CACGTGGTGCGGGCGGAGGGGTTGCACACGTCTCGCTTCTGTCTTTGCGC
TCGTCCTTGCCGCCGTTGCTTCTTGATGATGGTTCTCATGATAATCTCGA
CCCTACCCCAACACATCTACGACTAACACAGCGCCCTTGCAGCCACCATG
CAGAGCTCCCTCATGGCAACCGGCCGAGTGGTAGCCTCGCGTCTCCGTGC
CTCGGTGCCCTCGTCTGGCCATGTCCTGACCCGCGGCCTCTCCGCCCCGC
CCCAAAAGCCTCCTCCTCCGCCCTCCCCCGAAGAGCTGCAAAAGATGGTC
GCCACCTCCGAGGCGCACGTCAGCCAAGTCCGCGCCGGGACCATGAAAAC
CGTGCAGCCTCATACTGTCTCCGATGTTCCAGACCTGCCCACTTATCTCC
CGGAAAACCAAGAGGAAATGGCCGTCTTGAACGACCAACCCGCGAATCAA
AGGGCCCGCAAGGTCACCATCCGCCAAAAGGCTCAAAGCGCCATGCAATC
CAGCCCCAACAAGTCCTACCCCTGGCACATCACTTGGGCACAGCAGGAAC
GCTGGTCCAATCCTTTAATGGGATGGACTTCAACTGCTGATCCCTTAAGT
AACCAGTCACTCGCATTTGACACGGCTGAGGAGGCGGCTCGCTTTGCGAA
GCGTCAGGGGTGGGAAGTGCAGATTGAGCCAGAAATCAGTCGCAAGCAAG
TGCTGGGGACGAAGAAGTATGCCTTCAATTTCTTGCAGGAAGACGTGGAA
AACAAATTGAAGAGGGAGGGAGTTAAGACGAAGCATTTTGCGAATCAAGG
TTATGCGGCCTCGAATTGGTTTCAGTCGTTGAAGTACCACGGGGATGGGG
AGTGCGAACAGCATGGTCCCCCACAGAAGAAGAAGTAA
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Coding sequence (CDS) from alignment at chr20:340211..341248-

>NO20G01070.1 ID=NO20G01070.1|Name=NO20G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at chr20:340211..341248- (Nannochloropsis oceanica)
ATGTCGCTACCGCACCCGTTGCCCGTTGCCTTGCTGTACGTTAGTGGGGC
AGATCCTACCCAGCTGGCTTGGCTTCCGAACCGACAAACAAAACAACGTG
CACGCACCTTTCCCTTTGTGAGCGCCCTTGCAGCCACCATGCAGAGCTCC
CTCATGGCAACCGGCCGAGTGGTAGCCTCGCGTCTCCGTGCCTCGGTGCC
CTCGTCTGGCCATGTCCTGACCCGCGGCCTCTCCGCCCCGCCCCAAAAGC
CTCCTCCTCCGCCCTCCCCCGAAGAGCTGCAAAAGATGGTCGCCACCTCC
GAGGCGCACGTCAGCCAAGTCCGCGCCGGGACCATGAAAACCGTGCAGCC
TCATACTGTCTCCGATGTTCCAGACCTGCCCACTTATCTCCCGGAAAACC
AAGAGGAAATGGCCGTCTTGAACGACCAACCCGCGAATCAAAGGGCCCGC
AAGGTCACCATCCGCCAAAAGGCTCAAAGCGCCATGCAATCCAGCCCCAA
CAAGTCCTACCCCTGGCACATCACTTGGGCACAGCAGGAACGCTGGTCCA
ATCCTTTAATGGGATGGACTTCAACTGCTGATCCCTTAAGTAACCAGTCA
CTCGCATTTGACACGGCTGAGGAGGCGGCTCGCTTTGCGAAGCGTCAGGG
GTGGGAAGTGCAGATTGAGCCAGAAATCAGTCGCAAGCAAGTGCTGGGGA
CGAAGAAGTATGCCTTCAATTTCTTGCAGGAAGACGTGGAAAACAAATTG
AAGAGGGAGGGAGTTAAGACGAAGCATTTTGCGAATCAAGGTTATGCGGC
CTCGAATTGGTTTCAGTCGTTGAAGTACCACGGGGATGGGGAGTGCGAAC
AGCATGGTCCCCCACAGAAGAAGAAGTAA
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Synonyms
Publications