NO20G01070, NO20G01070 (gene) Nannochloropsis oceanica

Overview
NameNO20G01070
Unique NameNO20G01070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1038
Alignment locationchr20:340211..341248 -

Link to JBrowse

Properties
Property NameValue
DescriptionNadh dehydrogenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:340211..341248 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR006885NADH_UbQ_FeS_4_mit
Homology
[Close]
BLAST of NO20G01070 vs. NCBI_GenBank
Match: EWM22133.1 (nadh dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 363.2 bits (931), Expect = 7.400e-97
Identity = 192/244 (78.69%), Postives = 215/244 (88.11%), Query Frame = 0 
Query:   47 MQSSLMATGRVVASRLRASVPSSGHVLTRGLSAPXXXXXXXXXXXXLQKMVATSEAHVSQVRAGTMKTVQPHTVSDVPDLPTYLPENQEEMAVLNDQPANQRARKVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQSLAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKLKREGVKTKHFANQGYAASNWFQSLKYHGDGECEQHGPPQK 291
            MQSSLMA GR+  SRL+ + P++ H+  R LSA XXXXXXXXXXXXL+KMV+ SE+HV ++RAGTMK VQP+ V+DVPDLPTYLP+ +EEMAVLN+QPANQRARKVTIRQKAQ+AMQS+ NKSYPW+I+W  QERWSNPLMGWTSTADPLSNQ LAFDTAEEAARFAKRQGW V IEP ISR+QVLGTKKYAFNFL EDVENKLKREG KTK F N GY ASNWFQ LKYHGDGECEQHGPP++
Sbjct:    1 MQSSLMACGRLGTSRLQVTAPATHHLWYRCLSAXXXXXXXXXXXXXLEKMVSASESHVKEIRAGTMKKVQPYLVADVPDLPTYLPQKEEEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTKQFTNPGYTASNWFQPLKYHGDGECEQHGPPRE 244
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BLAST of NO20G01070 vs. NCBI_GenBank
Match: CBJ26181.1 (NADH dehydrogenase (ubiquinone) [Ectocarpus siliculosus])

HSP 1 Score: 130.2 bits (326), Expect = 1.100e-26
Identity = 77/194 (39.69%), Postives = 112/194 (57.73%), Query Frame = 0 
Query:  104 VSQVRA-GTMKTVQPHTVS----DVPDLPTYLPENQEEMAVLNDQPANQRARKVTIRQKAQSAMQS-SPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQSLAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKLKREGVKTKHFANQGYAASNWFQSLKYHGDGECEQHGPPQKK 292
            V+Q+RA   +   Q +TVS       D P   PEN EE   L+  P     RKV I QK++ A  + +    Y W++T+ Q+ERWSNPLMGWTST DP+SN  L+F T E+A +F +++GW+ +++    R+ V G   Y+ NFL  +VE+ LK  G KT+ F      AS++ + L + G     QHG P++K
Sbjct:   50 VAQMRALDVVLEAQNNTVSPPMYSTRDEP--FPENPEEALALDPLPPTVAGRKVIIAQKSKPATTTGTAGGLYGWNLTFKQKERWSNPLMGWTSTGDPMSNMQLSFSTPEQAVKFCQKRGWKYEVKAPAKREAVFGKFAYSHNFLPHNVEHDLKVNGTKTQQFTFPTAGASHYERPLNFVGTAPVRQHGNPEQK 241
[Close]
BLAST of NO20G01070 vs. NCBI_GenBank
Match: OQR90878.1 (NADH dehydrogenase, ubiquinone iron-sulfur protein 4 [Thraustotheca clavata])

HSP 1 Score: 125.2 bits (313), Expect = 3.400e-25
Identity = 66/153 (43.14%), Postives = 91/153 (59.48%), Query Frame = 0 
Query:  135 EEMAVLNDQPANQRARKVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQSLAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKLKREGVK-TKHFANQGYAASNWFQSLKYHGDGECEQHG 287
            +E AV+N      + RK  I   A++ MQS    ++ W I +  ++ W NPLMGWTS ADP+   +L F+T EEA  FA+RQGW  ++ P   ++   G   Y+ NFL  DVENKLK+ G K   HF +     S+W ++LKYHG+GE  QHG
Sbjct:   68 KECAVVNAVGGWTKGRKAIIFMPARNQMQSGDYNTHHWEIRFGTRQTWQNPLMGWTSGADPIDALTLKFNTKEEALEFAQRQGWSTEVMPVAEKEDFDGKIAYSHNFLPLDVENKLKKYGKKAAPHFKHAKGGHSHWVKTLKYHGNGEVVQHG 220
[Close]
BLAST of NO20G01070 vs. NCBI_GenBank
Match: OQR99019.1 (NADH dehydrogenase ubiquinone iron-sulfur protein 4 [Achlya hypogyna])

HSP 1 Score: 122.1 bits (305), Expect = 2.900e-24
Identity = 64/153 (41.83%), Postives = 90/153 (58.82%), Query Frame = 0 
Query:  135 EEMAVLNDQPANQRARKVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQSLAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKLKREGVK-TKHFANQGYAASNWFQSLKYHGDGECEQHG 287
            +E AV+N      + RK  I   A++ MQS    ++ W I +  ++ W NPLMGWTS ADP+    + F+T EEA  FA+RQGW  ++ P   ++   G   Y+ NFL  DVENKLK+ G K   HF +     S+W ++LKY+G+GE  QHG
Sbjct:   70 KECAVVNFVGEWTKGRKAIIYMPARNQMQSGDYNTHHWEIRFGTRQTWQNPLMGWTSGADPMDAMVMKFNTKEEAVAFAQRQGWSTEVMPVAEKEDFEGKIAYSHNFLPLDVENKLKKYGKKAAPHFKHAAGGHSHWVKTLKYNGNGEVVQHG 222
[Close]
BLAST of NO20G01070 vs. NCBI_GenBank
Match: XP_008902373.1 (hypothetical protein PPTG_09242 [Phytophthora parasitica INRA-310] >ETI51663.1 hypothetical protein F443_05022 [Phytophthora parasitica P1569] >ETL44996.1 hypothetical protein L916_04840 [Phytophthora parasitica] >ETM51296.1 hypothetical protein L914_04844 [Phytophthora parasitica] >ETN12399.1 hypothetical protein PPTG_09242 [Phytophthora parasitica INRA-310] >ETO80417.1 hypothetical protein F444_05072 [Phytophthora parasitica P1976] >ETP21447.1 hypothetical protein F441_05029 [Phytophthora parasitica CJ01A1] >KUF90536.1 NADH dehydrogenase iron-sulfur protein 4 [Phytophthora nicotianae] >KUF96218.1 Branchpoint-bridging protein [Phytophthora nicotianae])

HSP 1 Score: 117.9 bits (294), Expect = 5.400e-23
Identity = 70/189 (37.04%), Postives = 101/189 (53.44%), Query Frame = 0 
Query:  106 QVRAGTMKTVQPHTVSD--VPDLPTYLPENQEEMAVLNDQPANQRARKVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQSLAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKLKREGVKTK-HFANQGYAASNWFQSLKYHGDGECEQHGPPQKK 292
            Q  A   +T+ P+  S+  VP +        EE A+++        RK  + + A++ MQS  +++  W I +     W NPLMGWTSTADP       FDT EEA RFAK+QGWE++IE         G   Y+ NFL E +E  +K++G K+   F +     SNW ++LK+HG+G   QHG   K+
Sbjct:   54 QKYADAERTILPYQASEACVPTIDKSPMPYPEEAAIVSGTGEWSVGRKAKLFKPARNQMQSGIHQTKHWEIRFTSPRTWENPLMGWTSTADPYVGMVTKFDTKEEAERFAKKQGWELEIEEPAPVGDYYGKISYSHNFLPEHIETLIKQKGKKSAVQFKHPTGRRSNWVKTLKFHGNGVVAQHGGEAKE 242
[Close]
BLAST of NO20G01070 vs. NCBI_GenBank
Match: ETL98155.1 (hypothetical protein L917_04739 [Phytophthora parasitica] >ETP27856.1 hypothetical protein F442_22858 [Phytophthora parasitica P10297])

HSP 1 Score: 117.9 bits (294), Expect = 5.400e-23
Identity = 70/189 (37.04%), Postives = 101/189 (53.44%), Query Frame = 0 
Query:  106 QVRAGTMKTVQPHTVSD--VPDLPTYLPENQEEMAVLNDQPANQRARKVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQSLAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKLKREGVKTK-HFANQGYAASNWFQSLKYHGDGECEQHGPPQKK 292
            Q  A   +T+ P+  S+  VP +        EE A+++        RK  + + A++ MQS  +++  W I +     W NPLMGWTSTADP       FDT EEA RFAK+QGWE++IE         G   Y+ NFL E +E  +K++G K+   F +     SNW ++LK+HG+G   QHG   K+
Sbjct:   54 QKYADAERTILPYQASEACVPTIDKSPMPYPEEAAIVSGTGEWSVGRKAKLFKPARNQMQSGIHQTKHWEIRFTSPRTWENPLMGWTSTADPYVGMVTKFDTKEEAERFAKKQGWELEIEEPAPVGDYYGKISYSHNFLPEHIETLIKQKGKKSAVQFKHPTGRRSNWVKTLKFHGNGVVAQHGGEAKE 242
[Close]
BLAST of NO20G01070 vs. NCBI_GenBank
Match: GAY04487.1 (trehalose-phosphatase [Pythium insidiosum])

HSP 1 Score: 117.1 bits (292), Expect = 9.300e-23
Identity = 72/200 (36.00%), Postives = 105/200 (52.50%), Query Frame = 0 
Query:   93 LQKMVATSEAHVSQVRAGTMKTVQPHTVSDVPDLPTYLPENQEEMAVLNDQPANQRARKVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQSLAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKLKREGVKTK-HFANQGYAASNWFQSLKYHGDGECEQHGPPQKK 292
            + K  A  E    QV A   +T+ P   +++P + T    +  E ++++        RK  +   A+  MQS    +  W I +     W NPLMGWTSTA+P+    + FD+ E+A  FA+RQG+EVQIE      +  G   Y+ NFL  DVEN +K+ G K+  HF +     SNW ++LKYHG+G   QHG   K+
Sbjct:  299 IAKEEALMEKLKEQVLAKANRTILPDH-ANLPSIETAPFPHPSECSIVSGVSEWAAGRKAKVFMPARHQMQSGTYNTRHWEIRFESPRTWENPLMGWTSTAEPMHGMVMKFDSKEQALAFAERQGYEVQIEEPAPVGEFDGKISYSHNFLPLDVENMIKKHGKKSHVHFRHPTGRRSNWVKTLKYHGNGVVAQHGGEAKE 497
[Close]
BLAST of NO20G01070 vs. NCBI_GenBank
Match: XP_002899427.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, putative [Phytophthora infestans T30-4] >EEY61787.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, putative [Phytophthora infestans T30-4])

HSP 1 Score: 116.7 bits (291), Expect = 1.200e-22
Identity = 69/182 (37.91%), Postives = 99/182 (54.40%), Query Frame = 0 
Query:  113 KTVQPHTVSD--VPDLPTYLPENQEEMAVLNDQPANQRARKVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQSLAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKLKREGVKTK-HFANQGYAASNWFQSLKYHGDGECEQHGPPQKK 292
            +T+ P+  S+  VP +        EE A+++        RK  + + A++ MQS  +++  W I ++    W NPLMGWTSTADP       FDT EEA RFAK+QGWE++I          G   Y+ NFL E VE  +K++G K+   F +     SNW ++LKYHG+G   QHG   K+
Sbjct:   61 RTILPYHASEACVPTIEKSPMPYPEEAAIMSGTGEWSVGRKANLFKPARNQMQSGIHQTKHWEIRFSSPRTWENPLMGWTSTADPYIGLVTKFDTKEEAERFAKKQGWELEITEPAPVGDYYGKISYSHNFLPEHVETLIKQKGKKSAVQFKHPTGRQSNWVKTLKYHGNGVVAQHGGEAKE 242
[Close]
BLAST of NO20G01070 vs. NCBI_GenBank
Match: ETK91590.1 (hypothetical protein L915_04893 [Phytophthora parasitica])

HSP 1 Score: 115.5 bits (288), Expect = 2.700e-22
Identity = 69/189 (36.51%), Postives = 100/189 (52.91%), Query Frame = 0 
Query:  106 QVRAGTMKTVQPHTVSD--VPDLPTYLPENQEEMAVLNDQPANQRARKVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQSLAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKLKREGVKTK-HFANQGYAASNWFQSLKYHGDGECEQHGPPQKK 292
            Q  A   +T+ P+  S+  VP +        EE A+++        RK  + + A++ MQS  +++  W I +     W NPLMGWTSTADP       FDT EEA RFAK+QGWE++IE         G   Y+ NFL E +E  +K++G K+   F +     SNW ++L +HG+G   QHG   K+
Sbjct:   54 QKYADAERTILPYQASEACVPTIDKSPMPYPEEAAIVSGTGEWSVGRKAKLFKPARNQMQSGIHQTKHWEIRFTSPRTWENPLMGWTSTADPYVGMVTKFDTKEEAERFAKKQGWELEIEEPAPVGDYYGKISYSHNFLPEHIETLIKQKGKKSAVQFKHPTGRRSNWVKTLMFHGNGVVAQHGGEAKE 242
[Close]
BLAST of NO20G01070 vs. NCBI_GenBank
Match: GAX96494.1 (trehalose-phosphatase [Pythium insidiosum])

HSP 1 Score: 114.4 bits (285), Expect = 6.000e-22
Identity = 71/200 (35.50%), Postives = 104/200 (52.00%), Query Frame = 0 
Query:   93 LQKMVATSEAHVSQVRAGTMKTVQPHTVSDVPDLPTYLPENQEEMAVLNDQPANQRARKVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQSLAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKLKREGVKTK-HFANQGYAASNWFQSLKYHGDGECEQHGPPQKK 292
            + K  A  E    QV A   +T+ P   +++P + T    +  E ++++        RK  +   A+  MQS    +  W I +     W  PLMGWTSTA+P+    + FD+ E+A  FA+RQG+EVQIE      +  G   Y+ NFL  DVEN +K+ G K+  HF +     SNW ++LKYHG+G   QHG   K+
Sbjct:  296 IAKEEALMEKLKEQVLAKANRTILPDH-ANLPSIETAPFPHPSECSIVSGVSEWAAGRKAKVFMPARHQMQSGTYNTRHWEIRFESPRTWEXPLMGWTSTAEPMHGMVMKFDSKEQALAFAERQGYEVQIEEPAPVGEFDGKISYSHNFLPLDVENMIKKHGKKSHVHFRHPTGRRSNWVKTLKYHGNGVVAQHGGEAKE 494
The following BLAST results are available for this feature:
BLAST of NO20G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22133.17.400e-9778.69nadh dehydrogenase [Nannochloropsis gaditana][more]
CBJ26181.11.100e-2639.69NADH dehydrogenase (ubiquinone) [Ectocarpus silicu... [more]
OQR90878.13.400e-2543.14NADH dehydrogenase, ubiquinone iron-sulfur protein... [more]
OQR99019.12.900e-2441.83NADH dehydrogenase ubiquinone iron-sulfur protein ... [more]
XP_008902373.15.400e-2337.04hypothetical protein PPTG_09242 [Phytophthora para... [more]
ETL98155.15.400e-2337.04hypothetical protein L917_04739 [Phytophthora para... [more]
GAY04487.19.300e-2336.00trehalose-phosphatase [Pythium insidiosum][more]
XP_002899427.11.200e-2237.91NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
ETK91590.12.700e-2236.51hypothetical protein L915_04893 [Phytophthora para... [more]
GAX96494.16.000e-2235.50trehalose-phosphatase [Pythium insidiosum][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002637NSK002637Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01070.1NO20G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594581gene_6320Nannochloropsis oceanica (N. oceanica CCMP1779)gene
NDAgene8315Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01070.1NO20G01070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01070 ID=NO20G01070|Name=NO20G01070|organism=Nannochloropsis oceanica|type=gene|length=1038bp
ATGTCGCTACCGCACCCGTTGCCCGTTGCCTTGCTGTACGTTAGTGGGGC
AGATCCTACCCAGCTGGCTTGGCTTCCGAACCGACAAACAAAACAACGTG
CACGCACCTTTCCCTTTGTGAGgttggctgtacatctttacgtttctcgt
cacgtggtgcgggcggaggggttgcacacgtctcgcttctgtctttgcgc
tcgtccttgccgccgttgcttcttgatgatggttctcatgataatctcga
ccctaccccaacacatctacgactaacacagCGCCCTTGCAGCCACCATG
CAGAGCTCCCTCATGGCAACCGGCCGAGTGGTAGCCTCGCGTCTCCGTGC
CTCGGTGCCCTCGTCTGGCCATGTCCTGACCCGCGGCCTCTCCGCCCCGC
CCCAAAAGCCTCCTCCTCCGCCCTCCCCCGAAGAGCTGCAAAAGATGGTC
GCCACCTCCGAGGCGCACGTCAGCCAAGTCCGCGCCGGGACCATGAAAAC
CGTGCAGCCTCATACTGTCTCCGATGTTCCAGACCTGCCCACTTATCTCC
CGGAAAACCAAGAGGAAATGGCCGTCTTGAACGACCAACCCGCGAATCAA
AGGGCCCGCAAGGTCACCATCCGCCAAAAGGCTCAAAGCGCCATGCAATC
CAGCCCCAACAAGTCCTACCCCTGGCACATCACTTGGGCACAGCAGGAAC
GCTGGTCCAATCCTTTAATGGGATGGACTTCAACTGCTGATCCCTTAAGT
AACCAGTCACTCGCATTTGACACGGCTGAGGAGGCGGCTCGCTTTGCGAA
GCGTCAGGGGTGGGAAGTGCAGATTGAGCCAGAAATCAGTCGCAAGCAAG
TGCTGGGGACGAAGAAGTATGCCTTCAATTTCTTGCAGGAAGACGTGGAA
AACAAATTGAAGAGGGAGGGAGTTAAGACGAAGCATTTTGCGAATCAAGG
TTATGCGGCCTCGAATTGGTTTCAGTCGTTGAAGTACCACGGGGATGGGG
AGTGCGAACAGCATGGTCCCCCACAGAAGAAGAAGTAA
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protein sequence of NO20G01070.1

>NO20G01070.1-protein ID=NO20G01070.1-protein|Name=NO20G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MSLPHPLPVALLYVSGADPTQLAWLPNRQTKQRARTFPFVSALAATMQSS
LMATGRVVASRLRASVPSSGHVLTRGLSAPPQKPPPPPSPEELQKMVATS
EAHVSQVRAGTMKTVQPHTVSDVPDLPTYLPENQEEMAVLNDQPANQRAR
KVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPLSNQS
LAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDVENKL
KREGVKTKHFANQGYAASNWFQSLKYHGDGECEQHGPPQKKK*
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Synonyms
Publications