NO20G01050.1, NO20G01050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01050.1
Unique NameNO20G01050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1942
Alignment locationchr20:331663..333739 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:331663..333739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01050.1 vs.
Match: EWM22112.1 (ubiquitin fusion degradaton [Nannochloropsis gaditana])

HSP 1 Score: 278.1 bits (710), Expect = 5.300e-71
Identity = 190/392 (48.47%), Postives = 223/392 (56.89%), Query Frame = 0 
Query:  113 MLFQLFLVSPTSATTTAGARGGGGGEKAGLPPGARKTHAGVLEFSAEEGTVGLPLKVRKSLLGGVGGSGGGTVAGEELKKGQGGGGEG------LWNIVGCMVRVKYIRLEKGRYAKFQPKTGGLSQVPELKGMLEMNLLKHSTLTKGDLLQVWYRGKCFDLKVTELEPIEAMGLHAVTVIDTDLTVDVDVPEEQVEKEKERGTELGRTSRGGGHSVGEAMGNEVSPLRMLGGSSSISGRGGGGGGGGGGGGGGGGKKLGGSGTTPTRNATSEEGVDEPENARSAITRHMKMDALGLEPTESEEGVISLVVRKPDGSVKSRLFRKHQPFQDVFRFVDAFSVSDE-----KSYRLVTRFPRRVFCAVETVGQSVEEVLGPGTGKKEMLMYEAC 494
            MLFQL L+               G +   LP GAR THAGVLEFSAE+G +GLPLKVRKSL      +      G E +    GG EG       W   G  VRVKY+RLEKG YAK QP+TG L  VPELKGMLEMNL  H+TL++GD+LQVWYRG+CFDL+V  LEP +     AVTVIDTDLTVDV+VPEEQ E+E+       R S   G   G+ +G    P R+   S S   RG   G                        ++   G  E E  +S I    ++  L  EP E     I+LVVRKPDGS+ SR F + QPFQDVFRFV+A SVS +      +YRLVTRFPRRVF   ET  QSV EVLG   GK+E LMYEAC
Sbjct:    1 MLFQLSLLPAE------------GNKSKQLPAGARVTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGS-GWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQ-----AVTVIDTDLTVDVEVPEEQTERERVE----KRLSTDAGGVKGQVVGGGGPPPRV---SQSCESRGQEAG---------------------MEESSVNSGAKEEERRKSMIA--AQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSDHDRLHMTYRLVTRFPRRVFTVGETAAQSVGEVLGSEAGKRETLMYEAC 344
The following BLAST results are available for this feature:
BLAST of NO20G01050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22112.15.300e-7148.47ubiquitin fusion degradaton [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01050NO20G01050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01050.1NO20G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01050.1.cds1NO20G01050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01050.1.cds2NO20G01050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01050.1 ID=NO20G01050.1|Name=NO20G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp
AAAGAGAACTGCAAATATATCTGTGACGGGGGTGATGGTGGGCGTGTGGG
TAGATTTGTGGCTTTGATATGAGCGTAAAAAGAGGACAAAGTTTTGTTCC
ACCGCTGGAGATGGAAGAACGAGAACGATGACGATATGCTACGCAACGTC
TTCGCGTGTTCGAGAATGTCTCTCTCACTCCACACAACACATTCACTGAC
AGGTTCACCGCCAGCAGCGGCAATATAGACGACGTCTTGGTCTGTCTGCC
ATTTCGTGATTTCCCACCCCTTCTGGTCTAGTCGTCGGCCTCTTCTCCGT
CTCCACACCCCAGCAAGCCTCACCTCACTCGTTCAAAGTACGCCCCACTC
GTCCAACCCGCCGAAACTGAAAACCATGGACTTCGACCGCAGCGTTTCCA
AGCTCAAAAAGGAGCAGGAGAAGCGACGGGCTGAAGCATTGCGCAAGGCG
GAACGTGAACGCAAAGCTCAAGAAGAGGCCCAAAGGCAGCACGCCCTCAT
CCAACAAGCCGTTGAAACCCGGCGTCGGGAACAACTTGAAAAGGAAGAGC
ACGACAGGCTCGCCGTAGAAGAAGAACGGAGGATCACTGCGGGCATTAAC
TATAGCGTGGCTCTACTTCCCTTTGAAGTTGAGGGAGAGGGTGACAAGAT
CACTCTCCCACCAAGCGCCCTGGAAAGTTTGAGCAAGCAAGACGCCCTGG
CCCACGGACCGATGTTGTTTCAGCTTTTCCTGGTCTCTCCTACATCAGCA
ACAACAACAGCAGGAGCCAGAGGGGGCGGAGGAGGAGAAAAGGCAGGGCT
GCCGCCAGGGGCGAGGAAGACACATGCAGGGGTGTTGGAATTCTCGGCAG
AGGAGGGAACGGTGGGCTTACCACTCAAAGTTCGCAAGAGCCTTTTAGGG
GGCGTTGGTGGTAGTGGTGGTGGTACTGTTGCTGGGGAAGAATTGAAGAA
AGGACAGGGGGGAGGAGGAGAGGGTTTGTGGAATATAGTTGGGTGTATGG
TCCGTGTCAAATACATTCGGTTGGAGAAAGGCAGGTATGCCAAGTTTCAG
CCCAAGACGGGGGGGCTATCGCAAGTCCCTGAACTGAAGGGAATGCTGGA
AATGAATTTACTGAAGCACTCCACTTTGACCAAAGGCGATCTATTGCAGG
TCTGGTACAGGGGCAAGTGCTTCGATTTAAAGGTAACTGAGTTGGAGCCT
ATAGAGGCAATGGGCTTGCATGCAGTGACGGTGATCGATACGGATCTAAC
GGTTGATGTGGACGTGCCGGAGGAGCAGGTGGAGAAGGAAAAGGAGCGAG
GGACGGAGTTGGGGAGGACTTCAAGAGGCGGAGGCCACTCTGTGGGTGAA
GCGATGGGGAATGAGGTCTCACCACTACGGATGTTGGGGGGGAGTAGCAG
CATAAGTGGTCGTGGAGGAGGCGGAGGAGGCGGAGGAGGTGGAGGAGGCG
GGGGCGGAGGGAAGAAGCTGGGGGGCAGTGGGACAACCCCGACGAGGAAT
GCGACTTCAGAAGAAGGCGTGGACGAACCAGAAAATGCCCGTAGCGCGAT
AACGAGACACATGAAAATGGATGCCCTTGGGTTGGAACCGACCGAGAGTG
AAGAGGGGGTGATTAGCTTGGTGGTGCGAAAGCCAGATGGGTCTGTGAAG
AGCAGACTCTTCCGAAAGCACCAGCCTTTCCAGGACGTGTTTCGTTTTGT
TGATGCCTTTTCTGTGTCCGACGAAAAGAGTTACCGCTTGGTCACTCGCT
TTCCACGGCGGGTGTTTTGTGCGGTTGAGACGGTGGGCCAGAGCGTCGAG
GAGGTTTTGGGGCCAGGGACGGGGAAGAAGGAGATGCTCATGTACGAGGC
GTGTTGAGCGGGGAAGGAGGGAAAGAGGGCATAGCAATGTAGTGTGCATA
GAGCGACGAAGGGGTAGCAGTACATATTTATTGCGGCAAAGT
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protein sequence of NO20G01050.1

>NO20G01050.1-protein ID=NO20G01050.1-protein|Name=NO20G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
MDFDRSVSKLKKEQEKRRAEALRKAERERKAQEEAQRQHALIQQAVETRR
REQLEKEEHDRLAVEEERRITAGINYSVALLPFEVEGEGDKITLPPSALE
SLSKQDALAHGPMLFQLFLVSPTSATTTAGARGGGGGEKAGLPPGARKTH
AGVLEFSAEEGTVGLPLKVRKSLLGGVGGSGGGTVAGEELKKGQGGGGEG
LWNIVGCMVRVKYIRLEKGRYAKFQPKTGGLSQVPELKGMLEMNLLKHST
LTKGDLLQVWYRGKCFDLKVTELEPIEAMGLHAVTVIDTDLTVDVDVPEE
QVEKEKERGTELGRTSRGGGHSVGEAMGNEVSPLRMLGGSSSISGRGGGG
GGGGGGGGGGGGKKLGGSGTTPTRNATSEEGVDEPENARSAITRHMKMDA
LGLEPTESEEGVISLVVRKPDGSVKSRLFRKHQPFQDVFRFVDAFSVSDE
KSYRLVTRFPRRVFCAVETVGQSVEEVLGPGTGKKEMLMYEAC*
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mRNA from alignment at chr20:331663..333739+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01050.1 ID=NO20G01050.1|Name=NO20G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2077bp|location=Sequence derived from alignment at chr20:331663..333739+ (Nannochloropsis oceanica)
AAAGAGAACTGCAAATATATCTGTGACGGGGGTGATGGTGGGCGTGTGGG
TAGATTTGTGGCTTTGATATGAGCGTAAAAAGAGGACAAAGTTTTGTTCC
ACCGCTGGAGATGGAAGAACGAGAACGATGACGATATGCTACGCAACGTC
TTCGCGTGTTCGAGAATGTCTCTCTCACTCCACACAACACATTCACTGAC
AGGTTCACCGCCAGCAGCGGCAATATAGACGACGTCTTGGTCTGTCTGCC
ATTTCGTGATTTCCCACCCCTTCTGGTCTAGTCGTCGGCCTCTTCTCCGT
CTCCACACCCCAGCAAGCCTCACCTCACTCGTTCAAAGTACGCCCCACTC
GTCCAACCCGCCGAAACTGAAAACCATGGACTTCGACCGCAGCGTTTCCA
AGCTCAAAAAGGAGCAGGAGAAGCGACGGGCTGAAGCATTGCGCAAGGCG
GAACGGTACGTCGCTATGTGTGTATGTACGTCCTTCCTTCTCAAGCCTCC
CTAACTGTGACCTCAAGCTCTGTGCTGGTTCCGTGAACGCACCGCATTAA
CTATCCTCATTCCTTATACCCCGGTCCCACATTTCATTAGTGAACGCAAA
GCTCAAGAAGAGGCCCAAAGGCAGCACGCCCTCATCCAACAAGCCGTTGA
AACCCGGCGTCGGGAACAACTTGAAAAGGAAGAGCACGACAGGCTCGCCG
TAGAAGAAGAACGGAGGATCACTGCGGGCATTAACTATAGCGTGGCTCTA
CTTCCCTTTGAAGTTGAGGGAGAGGGTGACAAGATCACTCTCCCACCAAG
CGCCCTGGAAAGTTTGAGCAAGCAAGACGCCCTGGCCCACGGACCGATGT
TGTTTCAGCTTTTCCTGGTCTCTCCTACATCAGCAACAACAACAGCAGGA
GCCAGAGGGGGCGGAGGAGGAGAAAAGGCAGGGCTGCCGCCAGGGGCGAG
GAAGACACATGCAGGGGTGTTGGAATTCTCGGCAGAGGAGGGAACGGTGG
GCTTACCACTCAAAGTTCGCAAGAGCCTTTTAGGGGGCGTTGGTGGTAGT
GGTGGTGGTACTGTTGCTGGGGAAGAATTGAAGAAAGGACAGGGGGGAGG
AGGAGAGGGTTTGTGGAATATAGTTGGGTGTATGGTCCGTGTCAAATACA
TTCGGTTGGAGAAAGGCAGGTATGCCAAGTTTCAGCCCAAGACGGGGGGG
CTATCGCAAGTCCCTGAACTGAAGGGAATGCTGGAAATGAATTTACTGAA
GCACTCCACTTTGACCAAAGGCGATCTATTGCAGGTCTGGTACAGGGGCA
AGTGCTTCGATTTAAAGGTAACTGAGTTGGAGCCTATAGAGGCAATGGGC
TTGCATGCAGTGACGGTGATCGATACGGATCTAACGGTTGATGTGGACGT
GCCGGAGGAGCAGGTGGAGAAGGAAAAGGAGCGAGGGACGGAGTTGGGGA
GGACTTCAAGAGGCGGAGGCCACTCTGTGGGTGAAGCGATGGGGAATGAG
GTCTCACCACTACGGATGTTGGGGGGGAGTAGCAGCATAAGTGGTCGTGG
AGGAGGCGGAGGAGGCGGAGGAGGTGGAGGAGGCGGGGGCGGAGGGAAGA
AGCTGGGGGGCAGTGGGACAACCCCGACGAGGAATGCGACTTCAGAAGAA
GGCGTGGACGAACCAGAAAATGCCCGTAGCGCGATAACGAGACACATGAA
AATGGATGCCCTTGGGTTGGAACCGACCGAGAGTGAAGAGGGGGTGATTA
GCTTGGTGGTGCGAAAGCCAGATGGGTCTGTGAAGAGCAGACTCTTCCGA
AAGCACCAGCCTTTCCAGGACGTGTTTCGTTTTGTTGATGCCTTTTCTGT
GTCCGACGAAAAGAGTTACCGCTTGGTCACTCGCTTTCCACGGCGGGTGT
TTTGTGCGGTTGAGACGGTGGGCCAGAGCGTCGAGGAGGTTTTGGGGCCA
GGGACGGGGAAGAAGGAGATGCTCATGTACGAGGCGTGTTGAGCGGGGAA
GGAGGGAAAGAGGGCATAGCAATGTAGTGTGCATAGAGCGACGAAGGGGT
AGCAGTACATATTTATTGCGGCAAAGT
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Coding sequence (CDS) from alignment at chr20:331663..333739+

>NO20G01050.1 ID=NO20G01050.1|Name=NO20G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=1482bp|location=Sequence derived from alignment at chr20:331663..333739+ (Nannochloropsis oceanica)
ATGGACTTCGACCGCAGCGTTTCCAAGCTCAAAAAGGAGCAGGAGAAGCG
ACGGGCTGAAGCATTGCGCAAGGCGGAACGTGAACGCAAAGCTCAAGAAG
AGGCCCAAAGGCAGCACGCCCTCATCCAACAAGCCGTTGAAACCCGGCGT
CGGGAACAACTTGAAAAGGAAGAGCACGACAGGCTCGCCGTAGAAGAAGA
ACGGAGGATCACTGCGGGCATTAACTATAGCGTGGCTCTACTTCCCTTTG
AAGTTGAGGGAGAGGGTGACAAGATCACTCTCCCACCAAGCGCCCTGGAA
AGTTTGAGCAAGCAAGACGCCCTGGCCCACGGACCGATGTTGTTTCAGCT
TTTCCTGGTCTCTCCTACATCAGCAACAACAACAGCAGGAGCCAGAGGGG
GCGGAGGAGGAGAAAAGGCAGGGCTGCCGCCAGGGGCGAGGAAGACACAT
GCAGGGGTGTTGGAATTCTCGGCAGAGGAGGGAACGGTGGGCTTACCACT
CAAAGTTCGCAAGAGCCTTTTAGGGGGCGTTGGTGGTAGTGGTGGTGGTA
CTGTTGCTGGGGAAGAATTGAAGAAAGGACAGGGGGGAGGAGGAGAGGGT
TTGTGGAATATAGTTGGGTGTATGGTCCGTGTCAAATACATTCGGTTGGA
GAAAGGCAGGTATGCCAAGTTTCAGCCCAAGACGGGGGGGCTATCGCAAG
TCCCTGAACTGAAGGGAATGCTGGAAATGAATTTACTGAAGCACTCCACT
TTGACCAAAGGCGATCTATTGCAGGTCTGGTACAGGGGCAAGTGCTTCGA
TTTAAAGGTAACTGAGTTGGAGCCTATAGAGGCAATGGGCTTGCATGCAG
TGACGGTGATCGATACGGATCTAACGGTTGATGTGGACGTGCCGGAGGAG
CAGGTGGAGAAGGAAAAGGAGCGAGGGACGGAGTTGGGGAGGACTTCAAG
AGGCGGAGGCCACTCTGTGGGTGAAGCGATGGGGAATGAGGTCTCACCAC
TACGGATGTTGGGGGGGAGTAGCAGCATAAGTGGTCGTGGAGGAGGCGGA
GGAGGCGGAGGAGGTGGAGGAGGCGGGGGCGGAGGGAAGAAGCTGGGGGG
CAGTGGGACAACCCCGACGAGGAATGCGACTTCAGAAGAAGGCGTGGACG
AACCAGAAAATGCCCGTAGCGCGATAACGAGACACATGAAAATGGATGCC
CTTGGGTTGGAACCGACCGAGAGTGAAGAGGGGGTGATTAGCTTGGTGGT
GCGAAAGCCAGATGGGTCTGTGAAGAGCAGACTCTTCCGAAAGCACCAGC
CTTTCCAGGACGTGTTTCGTTTTGTTGATGCCTTTTCTGTGTCCGACGAA
AAGAGTTACCGCTTGGTCACTCGCTTTCCACGGCGGGTGTTTTGTGCGGT
TGAGACGGTGGGCCAGAGCGTCGAGGAGGTTTTGGGGCCAGGGACGGGGA
AGAAGGAGATGCTCATGTACGAGGCGTGTTGA
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Synonyms
Publications