NO20G00060.4, NO20G00060.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00060.4
Unique NameNO20G00060.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1181
Alignment locationchr20:20169..22528 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:20169..22528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00060.4 vs.
Match: EWM22232.1 (Ankyrin repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 341.7 bits (875), Expect = 2.500e-90
Identity = 179/312 (57.37%), Postives = 218/312 (69.87%), Query Frame = 0 
Query:    1 MPATMATETRGGGQEEGKTTGKAEAAGLNTPTMPDDESLVTEGSKLVAAFHTAAKAGDTATLSKLL--DSSASSQLFTLLLNARERKSGRTALHTACRAGVPTSLAWLLDKGASVLVTDTEGYTPLDHARAKPRNAGCLECVRILQEHIREQPPPIKEVSVLLASFFEAPSDRAWMDWALEHYGPPLLDCKGRGHRSPLHLAVTHNDAGLLEELLEMGADPFAKDKEGVSPLDMVMMSGHKASIQALSRAMRTQLASFLGLALLFLLYRRGGSPQQAWLVLATLWPLGKTWHLLLLLGKEKGAARERALGEW 311
            M AT  TE R G + EG            T  + +D ++  + S++ AAFH AAKAGD A LS LL   +S++    +LL++AR+ ++G TALH AC+AG P ++ WLL+KGAS+L+TD  GYTPLD AR KP +    +C   +QE+I+  PPP K+V  LL SFFE P +RAW+DWA  HYGP LLD KGR  RSPLHLAV+H DA  LEELLEMGADPFAKD EG+SPLD+ M SGH+ SI+ LSRAM+ QL +FLGL LLFLLYR GG PQQAW VLATLWPLGKTW  LL  G    AAR  A+GEW
Sbjct:    1 MGATELTEERPGKEAEGPPDDC-------TFKVDEDAAVAAKASRVSAAFHEAAKAGDNAALSTLLLAFNSSTDARSSLLIDARDPRTGHTALHVACKAGAPLTVKWLLEKGASILITDKGGYTPLDLARVKPSDENIRDCACRIQEYIQAHPPPYKKVGPLLGSFFEPPLERAWLDWACLHYGPSLLDLKGRDQRSPLHLAVSHKDAAFLEELLEMGADPFAKDTEGLSPLDLAMRSGHRESIRVLSRAMQMQLVAFLGLTLLFLLYRHGGDPQQAWTVLATLWPLGKTWQ-LLWTGSGLSAARRGAMGEW 304
The following BLAST results are available for this feature:
BLAST of NO20G00060.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22232.12.500e-9057.37Ankyrin repeat-containing protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00060NO20G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00060.4NO20G00060.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00060.4.cds1NO20G00060.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00060.4.cds2NO20G00060.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00060.4.cds3NO20G00060.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00060.4.cds4NO20G00060.4.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00060.4.cds5NO20G00060.4.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00060.4.cds6NO20G00060.4.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00060.4.cds7NO20G00060.4.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00060.4.cds8NO20G00060.4.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00060.4 ID=NO20G00060.4|Name=NO20G00060.4|organism=Nannochloropsis oceanica|type=mRNA|length=1181bp
CAGGCGACGTTGCCGGAATTATGCCAGCGACCATGGCGACGGAAACGCGA
GGAGGAGGTCAGGAGGAGGGCAAGACTACGGGAAAGGCGGAAGCAGCAGG
ACTTAACACACCCACCATGCCCGACGACGAGAGCCTCGTGACCGAAGGCA
GCAAACTCGTCGCCGCCTTCCATACCGCCGCCAAGGCCGGCGACACCGCC
ACCCTCTCCAAACTTCTGGATTCCTCCGCCTCCAGCCAACTTTTCACTCT
CCTTCTTAATGCCCGCGAGCGCAAAAGTGGGAGGACAGCCCTTCACACCG
CTTGCCGGGCCGGCGTCCCCACCAGTCTTGCCTGGCTGTTGGACAAAGGT
GCTTCAGTCCTCGTCACTGACACCGAGGGCTACACCCCTCTGGATCACGC
TCGCGCCAAGCCCCGCAATGCCGGATGCCTTGAGTGCGTGCGCATCCTCC
AAGAACACATCCGAGAGCAGCCCCCTCCGATCAAAGAGGTGAGTGTCCTT
TTGGCCTCCTTCTTCGAGGCCCCATCAGACAGAGCGTGGATGGACTGGGC
TCTCGAGCATTACGGTCCACCCCTCCTCGACTGTAAGGGGCGAGGCCACC
GCTCGCCCCTGCACTTGGCCGTGACGCACAACGACGCCGGCCTGCTGGAA
GAGCTGCTGGAGATGGGTGCCGATCCATTCGCGAAGGACAAGGAAGGAGT
ATCCCCTTTGGACATGGTAATGATGAGTGGCCACAAAGCCAGCATCCAAG
CCCTCTCCCGCGCCATGAGGACACAACTGGCATCCTTCCTGGGCCTTGCG
CTCCTCTTCCTCCTCTATCGTCGGGGCGGAAGCCCTCAACAGGCATGGCT
AGTGCTGGCAACGCTCTGGCCGTTGGGCAAGACGTGGCACCTGCTGCTGC
TGCTGGGGAAAGAGAAGGGCGCGGCGAGGGAGCGGGCGTTGGGGGAATGG
TGAGGGAGGGAGGGCAGTGTTGAAGACGTGAGGCAGGAAATATGATTGAA
TGTGACCTCACGTAGGCGTGCATGTAGACGTAGATGAAGAAGTAGATATG
CACATGTATGTATATGATATACATATAAAGGGATGAATAAACTTGTGGAC
ATAGATGTAAACGTAGATGCATGTATGTAACTTGAGAGCTATACATACAC
GTAGAGGAACATATAGATTCTAGACATTCAC
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protein sequence of NO20G00060.4

>NO20G00060.4-protein ID=NO20G00060.4-protein|Name=NO20G00060.4|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MPATMATETRGGGQEEGKTTGKAEAAGLNTPTMPDDESLVTEGSKLVAAF
HTAAKAGDTATLSKLLDSSASSQLFTLLLNARERKSGRTALHTACRAGVP
TSLAWLLDKGASVLVTDTEGYTPLDHARAKPRNAGCLECVRILQEHIREQ
PPPIKEVSVLLASFFEAPSDRAWMDWALEHYGPPLLDCKGRGHRSPLHLA
VTHNDAGLLEELLEMGADPFAKDKEGVSPLDMVMMSGHKASIQALSRAMR
TQLASFLGLALLFLLYRRGGSPQQAWLVLATLWPLGKTWHLLLLLGKEKG
AARERALGEW*
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mRNA from alignment at chr20:20169..22528-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00060.4 ID=NO20G00060.4|Name=NO20G00060.4|organism=Nannochloropsis oceanica|type=mRNA|length=2360bp|location=Sequence derived from alignment at chr20:20169..22528- (Nannochloropsis oceanica)
CAGGCGACGTTGCCGGAATTATGCCAGCGACCATGGCGACGGAAACGCGA
GGAGGAGGTCAGGAGGAGGGCAAGACTACGGGAAAGGCGGAAGCAGCAGG
ACTTAACACACCCACCATGCCCGACGACGAGAGCCTCGTGACCGAAGGCA
GCAAGTAAGTGAGGAGGATAAGGGTGGTTACGAGGGGCAGGGGTCCTTGC
GCACGTCGTTGCAGTGTTTGATCGGGAGGACCTCATTTCTTTTCCCTTCA
CTTTCTACCCTCCCCAAAACAGACTCGTCGCCGCCTTCCATACCGCCGCC
AAGGCCGGCGACACCGCCACCCTCTCCAAACTTCTGGATTCCTCCGCCTC
CAGCCAACTTTTCACTCTCCTTCTTAATGCCCGCGAGCGCAAAAGTGGGA
GGACAGCCCTTCACACCGCTTGCCGGGCCGGCGTCCCCACCAGTCTTGCC
TGGCTGTTGGACAAAGGTGCTTCAGTCCTCGTCACTGACACGTACGTTTG
TCACGTACACCTGCGGGGATGCTTCTATGTAAAAAAGGATTGCGCGTAGT
CGTCTACCTCTATCACATGATTACAGTGCTTACTCACTCATTCTGTCCCC
ATTCATTTATTCCCTCCCTTCCTTCCTTCCTCCCCCCTCCCTCCCTTCCT
CCTTCCCTCCCTCCCTCCCAGCGAGGGCTACACCCCTCTGGATCACGCTC
GCGCCAAGCCCCGCAATGCCGGATGCCTTGAGTGCGTGCGCATCCTCCAA
GAACACATCCGAGAGCAGCCCCCTCCGATCAAAGAGGTACGTGCGTTTCA
TCCCCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
ACCCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTCCTTCCTTCCCTCGCAT
TCTATGGCTAAGCATGGTCGACGTTCGAGCCTAGTTCCACGACAGAGCTC
TCCCTTCTCTTAGGCTTCACATTGTGCCTGCCCCCGCGCCACCCTCTTCT
ATCGCTTCCACACCAACCTCCCTCCCCCTCCCTCCCTCCCTCCCTCCCTT
TCATTCCTCCAGGTGAGTGTCCTTTTGGCCTCCTTCTTCGAGGCCCCATC
AGACAGAGCGTGGATGGACTGGGCTCTCGAGCATTACGGTCCACCCCTCC
TCGACTGTAAGGTAGTAGCCCGCCCTCCCCCCCTCCCCCCCTCCCGTCCT
CTCTCCACCACAAGAACAAGGGATCTCTTGTCCCTGCCTTGACGACCTTT
CTAAGCCTCCTCCCCTCCCTCCCTCCCTCCCCTCCTCCTTCACCAGGGGC
GAGGCCACCGCTCGCCCCTGCACTTGGCCGTGACGCACAACGACGCCGGC
CTGCTGGAAGAGCTGCTGGAGATGGGTGGGTCGCAAGAGAGGGAGGGAGG
GAAGGAGGGAGGGAGGGAGGGAGGTCCTTGATGGCTGTGGCTCTATGTCC
TTGCTAAGGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTCC
CTCCCTCCCTCCCTCCCTCCCTGCCTGCCCAGGTGCCGATCCATTCGCGA
AGGACAAGGAAGGAGTATCCCCTTTGGACATGGTAATGATGAGTGGCCAC
AAAGCCAGCATCCAAGCCCTCTCCCGCGCCATGAGGACACAACTGGTGCG
TCTCCCCCCTCCCTCTTTCCCTCCTTCTCCTCCCATCTCGCCCTTCCCAG
GATTGTCGCCCACCTCCACCCGCCTACCTCTTCTCCCTCCGTCCCTCCCC
TCATCCCTCCCATGGCTTAATTTCTCACCCACCATCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCCAGGCATCCTTCCTGGGCC
TTGCGCTCCTCTTCCTCCTCTATCGTCGGGGCGGAAGCCCTCAACAGGTA
CGTCCCCCCTCGTCCGCTCCTTGAACACCGCACTCCTTCGCTAACTCGCT
CCTCCTGCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTTTTTCCCTCCCTGTCACAGGCATGGCTAGTGCTGGCAACGCTCTGGCC
GTTGGGCAAGACGTGGCACCTGCTGCTGCTGCTGGGGAAAGAGAAGGGCG
CGGCGAGGGAGCGGGCGTTGGGGGAATGGTGAGGGAGGGAGGGCAGTGTT
GAAGACGTGAGGCAGGAAATATGATTGAATGTGACCTCACGTAGGCGTGC
ATGTAGACGTAGATGAAGAAGTAGATATGCACATGTATGTATATGATATA
CATATAAAGGGATGAATAAACTTGTGGACATAGATGTAAACGTAGATGCA
TGTATGTAACTTGAGAGCTATACATACACGTAGAGGAACATATAGATTCT
AGACATTCAC
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Coding sequence (CDS) from alignment at chr20:20169..22528-

>NO20G00060.4 ID=NO20G00060.4|Name=NO20G00060.4|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr20:20169..22528- (Nannochloropsis oceanica)
ATGCCAGCGACCATGGCGACGGAAACGCGAGGAGGAGGTCAGGAGGAGGG
CAAGACTACGGGAAAGGCGGAAGCAGCAGGACTTAACACACCCACCATGC
CCGACGACGAGAGCCTCGTGACCGAAGGCAGCAAACTCGTCGCCGCCTTC
CATACCGCCGCCAAGGCCGGCGACACCGCCACCCTCTCCAAACTTCTGGA
TTCCTCCGCCTCCAGCCAACTTTTCACTCTCCTTCTTAATGCCCGCGAGC
GCAAAAGTGGGAGGACAGCCCTTCACACCGCTTGCCGGGCCGGCGTCCCC
ACCAGTCTTGCCTGGCTGTTGGACAAAGGTGCTTCAGTCCTCGTCACTGA
CACCGAGGGCTACACCCCTCTGGATCACGCTCGCGCCAAGCCCCGCAATG
CCGGATGCCTTGAGTGCGTGCGCATCCTCCAAGAACACATCCGAGAGCAG
CCCCCTCCGATCAAAGAGGTGAGTGTCCTTTTGGCCTCCTTCTTCGAGGC
CCCATCAGACAGAGCGTGGATGGACTGGGCTCTCGAGCATTACGGTCCAC
CCCTCCTCGACTGTAAGGGGCGAGGCCACCGCTCGCCCCTGCACTTGGCC
GTGACGCACAACGACGCCGGCCTGCTGGAAGAGCTGCTGGAGATGGGTGC
CGATCCATTCGCGAAGGACAAGGAAGGAGTATCCCCTTTGGACATGGTAA
TGATGAGTGGCCACAAAGCCAGCATCCAAGCCCTCTCCCGCGCCATGAGG
ACACAACTGGCATCCTTCCTGGGCCTTGCGCTCCTCTTCCTCCTCTATCG
TCGGGGCGGAAGCCCTCAACAGGCATGGCTAGTGCTGGCAACGCTCTGGC
CGTTGGGCAAGACGTGGCACCTGCTGCTGCTGCTGGGGAAAGAGAAGGGC
GCGGCGAGGGAGCGGGCGTTGGGGGAATGGTGA
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Synonyms
Publications