NO02G05980, NO02G05980 (gene) Nannochloropsis oceanica

Overview
NameNO02G05980
Unique NameNO02G05980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2820
Alignment locationchr2:1597650..1600469 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1597650..1600469 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO02G05980 vs. NCBI_GenBank
Match: CBJ26071.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.2 bits (230), Expect = 8.900e-16
Identity = 45/105 (42.86%), Postives = 66/105 (62.86%), Query Frame = 0
Query:   38 RERMDLLEGLDRCVGEVVTEMLRVVEGGMTAAVSAADGEVRLCMLLPHFEHFFNQLVQADEIYALQCIDQYIRVLNGPPTYPT-----SDARGLLSACLSFLRDK 138
            RER ++L G DRC+G++V+EML  +E       S  D  + LC L P F H F+++ +ADE YA QC++Q+I +L GPP  PT     S+   LL+AC+ FL ++
Sbjct:  278 RERREMLVGADRCLGDIVSEMLATIEDN---DESHEDAHIYLCTLFPQFSHIFSEMKEADEEYARQCLEQHIALLRGPPNRPTAKSLSSEQGDLLTACVDFLSEQ 379          
BLAST of NO02G05980 vs. NCBI_GenBank
Match: OQR99084.1 (hypothetical protein ACHHYP_07349 [Achlya hypogyna])

HSP 1 Score: 83.2 bits (204), Expect = 9.200e-13
Identity = 48/109 (44.04%), Postives = 60/109 (55.05%), Query Frame = 0
Query:   29 ASPDRAAL--LRERMDLLEGLDRCVGEVVTEMLRVVEGGMTAAVSAADGEVRLCM-LLPHFEHFFNQLVQADEIYALQCIDQYIRVLNGPPTYPTSDARGLLSACLSFL 135
            A  D+A    L+ + D L GL+RC GEVVTEML+V+E          DGE+RL M + P+F   ++QL   D  YA QC   YI  L GPP  PT D  GL    L F+
Sbjct:  159 AKQDKATFEQLKIKRDGLLGLERCAGEVVTEMLQVIEDD-----DGEDGELRLVMEIFPNFADLYSQLKMNDPDYAAQCHKHYIEYLQGPPNRPTVDESGLYQVVLEFM 262          
BLAST of NO02G05980 vs. NCBI_GenBank
Match: XP_009821755.1 (hypothetical protein H257_00670 [Aphanomyces astaci] >ETV89355.1 hypothetical protein H257_00670 [Aphanomyces astaci])

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-12
Identity = 47/110 (42.73%), Postives = 59/110 (53.64%), Query Frame = 0
Query:   29 ASPDRAALLRERM--DLLEGLDRCVGEVVTEMLRVVEGGMTAAVSAADGEVRLCM-LLPHFEHFFNQLVQADEIYALQCIDQYIRVLNGPPTYPTSDARGLLSACLSFLR 136
            A   RA   +ER+  D L GL+RC+GEVVTEML ++E          +GE+RL M + P F   FNQL   D  YA  C   Y+  L GPP  PT D  GL    L F++
Sbjct:  185 AQQQRAVFEQERIKRDGLLGLERCMGEVVTEMLHIIEDD-----DGEEGEMRLVMDVFPSFADLFNQLKSNDREYASHCHKHYVEYLRGPPNRPTVDESGLFGVVLDFMK 289          
BLAST of NO02G05980 vs. NCBI_GenBank
Match: XP_009821756.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV89356.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-12
Identity = 47/110 (42.73%), Postives = 59/110 (53.64%), Query Frame = 0
Query:   29 ASPDRAALLRERM--DLLEGLDRCVGEVVTEMLRVVEGGMTAAVSAADGEVRLCM-LLPHFEHFFNQLVQADEIYALQCIDQYIRVLNGPPTYPTSDARGLLSACLSFLR 136
            A   RA   +ER+  D L GL+RC+GEVVTEML ++E          +GE+RL M + P F   FNQL   D  YA  C   Y+  L GPP  PT D  GL    L F++
Sbjct:  168 AQQQRAVFEQERIKRDGLLGLERCMGEVVTEMLHIIEDD-----DGEEGEMRLVMDVFPSFADLFNQLKSNDREYASHCHKHYVEYLRGPPNRPTVDESGLFGVVLDFMK 272          
BLAST of NO02G05980 vs. NCBI_GenBank
Match: XP_008609605.1 (hypothetical protein SDRG_05656 [Saprolegnia diclina VS20] >EQC36824.1 hypothetical protein SDRG_05656 [Saprolegnia diclina VS20])

HSP 1 Score: 81.6 bits (200), Expect = 2.700e-12
Identity = 47/111 (42.34%), Postives = 61/111 (54.95%), Query Frame = 0
Query:   27 AFASPDRAAL--LRERMDLLEGLDRCVGEVVTEMLRVVEGGMTAAVSAADGEVRLCM-LLPHFEHFFNQLVQADEIYALQCIDQYIRVLNGPPTYPTSDARGLLSACLSFL 135
            A A  D+AA   L+ + D L GL+RC GEVVTEML V+E          +GE+RL M + P+F   ++QL   D  YA QC   ++  L GPP  PT D  GL    L F+
Sbjct:  159 AAAKQDKAAFEQLKIKRDGLLGLERCAGEVVTEMLEVIEDD-----DGEEGEMRLVMEIFPNFADLYSQLKMNDAAYAAQCHKHFVEYLQGPPNRPTIDESGLYHIVLDFM 264          
BLAST of NO02G05980 vs. NCBI_GenBank
Match: XP_012196524.1 (hypothetical protein SPRG_02565 [Saprolegnia parasitica CBS 223.65] >KDO32873.1 hypothetical protein SPRG_02565 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 81.6 bits (200), Expect = 2.700e-12
Identity = 47/111 (42.34%), Postives = 61/111 (54.95%), Query Frame = 0
Query:   27 AFASPDRAAL--LRERMDLLEGLDRCVGEVVTEMLRVVEGGMTAAVSAADGEVRLCM-LLPHFEHFFNQLVQADEIYALQCIDQYIRVLNGPPTYPTSDARGLLSACLSFL 135
            A A  D+AA   L+ + D L GL+RC GEVVTEML V+E          +GE+RL M + P+F   ++QL   D  YA QC   ++  L GPP  PT D  GL    L F+
Sbjct:  158 AAAKQDKAAFEQLKIKRDGLLGLERCAGEVVTEMLEVIEDD-----DGEEGEMRLVMEIFPNFADLYSQLKMNDAAYAAQCHKHFVEYLQGPPNRPTIDESGLYHIVLDFM 263          
BLAST of NO02G05980 vs. NCBI_GenBank
Match: XP_008862409.1 (hypothetical protein H310_01148 [Aphanomyces invadans] >ETW08604.1 hypothetical protein H310_01148 [Aphanomyces invadans])

HSP 1 Score: 81.3 bits (199), Expect = 3.500e-12
Identity = 44/97 (45.36%), Postives = 54/97 (55.67%), Query Frame = 0
Query:   40 RMDLLEGLDRCVGEVVTEMLRVVEGGMTAAVSAADGEVRLCM-LLPHFEHFFNQLVQADEIYALQCIDQYIRVLNGPPTYPTSDARGLLSACLSFLR 136
            + D L GL+RC GEVVTEML ++E        A +GE+RL M + P F   F QL   D  YA QC   Y+  L GPP  PT DA GL    L F++
Sbjct:  179 KRDGLLGLERCTGEVVTEMLHIIEDD-----DAEEGEMRLVMDVFPSFADMFGQLKSNDPEYAAQCHKHYMEYLRGPPNRPTVDASGLFDVVLDFMK 270          
BLAST of NO02G05980 vs. NCBI_GenBank
Match: CBJ30236.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.5 bits (197), Expect = 5.900e-12
Identity = 47/119 (39.50%), Postives = 63/119 (52.94%), Query Frame = 0
Query:   21 KDNLWAAFASPDRAALLRERMDLLEGLDRCVGEVVTEMLRVVEGGMTAAVSAADGEVRL-CMLLPHFEHFFNQLVQADEIYALQCIDQYIRVLNGPPTYPTSDARGLLSACLSFLRDKE 139
            K ++ AA   P R A  + + D L GL+R   E+VT ML VVE          +GE+RL   + P F   F Q++ AD+ +ALQC+  Y   L GPP  PT D  G L   +SFL+  E
Sbjct:   65 KPSVLAAKRDPGRYAEQKFQQDALVGLERMTSELVTGMLLVVE-----ECDREEGEIRLVAEIFPPFADLFKQILAADKAFALQCMQHYRSWLEGPPNRPTEDEMGFLDIIISFLKQLE 178          
BLAST of NO02G05980 vs. NCBI_GenBank
Match: EWM30062.1 (hypothetical protein Naga_100170g11 [Nannochloropsis gaditana])

HSP 1 Score: 79.3 bits (194), Expect = 1.300e-11
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    5 LQALANKLVLLGESEMKDNLWAAFASPDRAALLRERMDLLEGLDRCVGEVVTEMLRVVEG 65
            ++ LA+KL+ LGE EM++ L + FAS  RA   RE+MDLLEGLDRCVGEVVTEMLR+VEG
Sbjct:  167 VEVLASKLLQLGEKEMEEKLCSTFASSARATQWREQMDLLEGLDRCVGEVVTEMLRLVEG 226          
BLAST of NO02G05980 vs. NCBI_GenBank
Match: OQR95692.1 (hypothetical protein THRCLA_07644 [Thraustotheca clavata])

HSP 1 Score: 77.8 bits (190), Expect = 3.900e-11
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 0
Query:   40 RMDLLEGLDRCVGEVVTEMLRVVEGGMTAAVSAADGEVRLCM-LLPHFEHFFNQLVQADEIYALQCIDQYIRVLNGPPTYPTSDARGLLSACLSFLR 136
            + D L GL+RC GEVVTEML+V+E        + +GE+RL M + P+F   ++QL   D  YA QC   Y+  L GPP  PT D  GL    + F++
Sbjct:  182 KRDGLLGLERCAGEVVTEMLQVIED-----EDSEEGEMRLVMEIFPNFADLYSQLKMNDPEYAAQCHKHYLEYLQGPPNRPTVDESGLYQVVVEFMK 273          
The following BLAST results are available for this feature:
BLAST of NO02G05980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 16
Match NameE-valueIdentityDescription
CBJ26071.18.900e-1642.86conserved unknown protein [Ectocarpus siliculosus][more]
OQR99084.19.200e-1344.04hypothetical protein ACHHYP_07349 [Achlya hypogyna... [more]
XP_009821755.11.600e-1242.73hypothetical protein H257_00670 [Aphanomyces astac... [more]
XP_009821756.11.600e-1242.73hypothetical protein, variant [Aphanomyces astaci]... [more]
XP_008609605.12.700e-1242.34hypothetical protein SDRG_05656 [Saprolegnia dicli... [more]
XP_012196524.12.700e-1242.34hypothetical protein SPRG_02565 [Saprolegnia paras... [more]
XP_008862409.13.500e-1245.36hypothetical protein H310_01148 [Aphanomyces invad... [more]
CBJ30236.15.900e-1239.50conserved unknown protein [Ectocarpus siliculosus][more]
EWM30062.11.300e-1166.67hypothetical protein Naga_100170g11 [Nannochlorops... [more]
OQR95692.13.900e-1142.27hypothetical protein THRCLA_07644 [Thraustotheca c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL017nonsL017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR001ngnoR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007307NSK007307Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05980.1NO02G05980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622430gene_1192Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100170g11gene583Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05980.1NO02G05980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05980 ID=NO02G05980|Name=NO02G05980|organism=Nannochloropsis oceanica|type=gene|length=2820bp
CTCCTTGGTCTTGATGGACTTTTGAACGCCACGGCAGCGGCGGTGGCATC
TTACCAAGCTCCTTCTGCTCCTCGCCCTTCTGCCTGCTGTGCCTCGCCTC
TCCCCGTTCTTCACCTCACGTAAATGCTCTACCCTCATCTCCGCAGCCCT
GCATTCGACGAGTCTATCCATCAATATCCCTGCCATCCTATCACCTGGTG
CAGCTTATCCTACCGCCGAGCTCCCTCTTTGGCCCTGGCGCGTGCGTACC
AACAGCAAGAGGCTGCCGCTATACCCCCCCCCTCCCCCTCTTCCTTCCTT
CAACCATACCACAAAAGCATGGAAGAAGGAGAACCAGAAGCACAACGAGC
CGGTCTGAAGGCTGCGCGTGCCTTGGTGGTGCTTGGTCTTATTACCGCCC
GCGAGTGCAAACACCTCCTATCGGCCCTCTCTTTCACCAAAACCCCTCCT
TCGCCCCCTCCCCTCCATTCTTCCCAACCCCCCGCCGTTCCTACTTCCCC
CTATCACTCTTCTGGAAAAACTGTCTCTCCTCCTCCCCCTCCTCCTCCTC
GACGTCTGGATCCCATTAGTCTTGAGCCGCTGTGTGAGGTGGAAGGAGGG
ACGCACACCTTCTGCTTCCCTCCTTTGGGGGGGGGGTAGGGAGGGAGGGA
GGGAAAGAGGAAGGGTGTGAGGTGGTTTACAACGTGAGGTCTTTGTGTGA
ATATCTGGTCGCCACGGGTCAGTTCGTGGAGCCCACGAGCCGGAGAGCGA
TTGAGGGGGAGGACGTGCAGGTAAGGAGGGAGGGAGGGGGAAAGGGAGGG
AAGAAGGGAGGATGGCTTGGACGCCGGGCACATGTTCTAGAGAGGCGTTA
TTAAATGATGCATATTCTACAGGCGCTGGCGAACAAGCTGGTGCTGCTCG
GGGAGAGTGAGATGAAGGACAACTTGTGGGCTGCTTTTGCCTCGCCTGAC
CGgtacgcgagggagggagaaagggagggagggagggaaggagggaagga
gggaaggagggcggcagacacttgaggaagaaaaatgcgcgccttgtctt
tatcgccctccttttcctccctccctccttcccctctcttctaattgctt
ttccgactggagcgcatggagctcaccaccttgccaagcctgtccctcac
ctccctccctccctcccaccctccctcccttcttccctctcaatcgatgt
acgtcctccctccttccctcctcagTGCAGCGCTCTTGCGGGAGCGTATG
GATCTATTGGAGGGTCTCGACCGATGCGTAGGGGAGGTGGTGACAGAAAT
GCTGCGTGTGGTGGAGGGAGGGATGACGGCAGgtagggggagagggcggg
agggagggagggaagggagatgggagagaggcgtggaggggccaggaact
tgcaggcgacgagcaatcaactgtatgacgaccctcgtctttccttctgt
catttcactcgtcctcttccttccttcctccctccctccctctctccctc
ctttcctccctccctccctccctccctccctcacttgcgccctagCCGTC
TCGGCGGCCGACGGCGAGGTGCGCCTGTGCATGCTCTTGCCCCATTTCGA
GCACTTCTTCAACCAGgtccactcgcttccctcttctccctccctccctc
tctccctctctccctccctccctctctccttgctccgctttgaccatcta
gttgctcccctgacactccattaccaccttctctcccttccacttcccct
tcctccctcccctccgtccttccagCTGGTGCAGGCGGATGAGATCTACG
CCCTACAGTGCATCGACCAGTACATTCGTGTGCTCAAgtaaggaagcagg
gagggaaggagggagggagggagggaaggtgggtgtgagagagaaggagg
gaggaaagaagggaggttgagagggagggagggagggagggaaggaagga
agaagaggcggacgaaaagttaagggaaaacgcgcggtggaggctctcaa
atgacaccgtcgttctccttttcctacgtccctcaccccctccctccttc
cttccctccctccctccctccctgcaagCGGCCCTCCGACCTACCCTACG
AGCGACGCCCGAGGCCTCCTGTCGGCCTGCCTCTCCTTCCTCCGCGACAA
GGAGAGGGATTTGGCGCGAAAGgtggagaggaagcggaggaagcagcaga
agcaacaacacgaacagcagcagcagccagaaaggaggggatggatgggg
agatggcttggatgagggagggagggagggagggagggagggagggaggg
agggagggagggagatagaggcgcgaaggttgcttgtgtgtatatagagg
aatagaataagagggaagaagaggagggggatggaaggagtgggggaggg
gggagatgagaaaaaagaggggatagatgaatgaatctatgtgatgggag
aaattccgggattggaaaaagaagacggagagcaggtttaaaggagggtt
aagagacggagacgcatgcagacgccaaggcagggggacatgaagacagc
tccagctcctcgacacatctgcatatgtatatatatatatatatgtgtgt
gtgtgtgtgtgtgtgtgcgtgtaaacacactcaagtgcgtagtagcatgc
tctctatggaagggacgaaggaggagatggccaaccactaccgctacaaa
tactacaagTATCATCATTACCACTACCACCACGTCCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCCCCACCCCT
CCGGCCAATCCCGGACATAA
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protein sequence of NO02G05980.1

>NO02G05980.1-protein ID=NO02G05980.1-protein|Name=NO02G05980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MMHILQALANKLVLLGESEMKDNLWAAFASPDRAALLRERMDLLEGLDRC
VGEVVTEMLRVVEGGMTAAVSAADGEVRLCMLLPHFEHFFNQLVQADEIY
ALQCIDQYIRVLNGPPTYPTSDARGLLSACLSFLRDKERDLARKYHHYHY
HHVQQQQQQQQQQQQQQQQQQPHPSGQSRT*
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Synonyms
Publications