Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr2 genome chr2:1592724..1597664 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05970.2 vs.
Match: XP_005854854.1 (hypothetical protein NGA_0419300, partial [Nannochloropsis gaditana CCMP526]; EKU21508.1 hypothetical protein NGA_0419300, partial [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 794.3 bits (2050), Expect = 3.200e-226
Identity = 472/700 (67.43%), Postives = 524/700 (74.86%), Query Frame = 0
Query: 1 MASDGGNADTYAYEEEQERKALLQSLYGPMKTWFHGGEASSIKERFGPYPSFWQDLLTWEHTRVVQKLYLRWMDTGASGEDLLGILGDTKKEVTVEVVEAAAGTNEGGKEGGGEVGGEDRHVNGGAGNGGGRSSSALTEEQQQQEEQKEQEQEQEHEEKKAEEKEKRRKSRWG----GGEGETGTLTAAATTAAGESKRRSRWGDGGGATGEAGNKKKSRWSQPEAPPGAALDPETLQEIIALQLRLDNIHQRTATVVMDALAKESDPDKSPSPPPIYDGQGKRQNTREERMRASLKVERQEVIERLLKINPLFRPPADYVRQKPSRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGARGRMASSSANKDLQDEYDDLHVYITGETEAIVEQASEMVAKLLVPIDDAVNSQKMEQLRQLALINGTLREEEYCNLCGEKGHRQFECPTRHNTKVKMVNVKCAICGDTSHPTRDCRMGGQAGAQGGNKEVLDQEYLNFMAELGEGPPPSSSSSSSSAPPPRPSPRQES-----PAPPSAP---ALSSSSSSSSSSSSSYYGAQKTAGEAGHSAPQHHQQQQPSAASSPYYRTSEAAVGTTAAATGAAAGGTYAYSTNHHNPYSAAPAASYGGNSL-----GGYDYSTFYSQQAAAASYYTQPYQHQHQHQHQQYMYAAYPPPPP 684
MASDGGNADTYAYEEEQERKALLQSL+GPMKTWFHGGEASSIKERFGPYP+FWQDLLTWEHTRVVQKLYLRWMDTGASGE LL IL ++ E G +EGG+ G+ +++ + G G ++S + E+ E + E + EEKE++R+SRWG GG GE AGE KRRSRWGDGG GNKKKSRWSQPEA P +++DP+TLQEIIALQLRLDNIHQRTATV MDALA+ES+PDKSPSPPPIYD GKR NTREERM+A+LK ERQ+VIERLLKINPLFRPPADYVRQKP RRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEG+R RM ANKD+QDE+DDLHV+++GETE IVE+ASEMVAKLL+PIDDAVNSQKMEQLRQLALINGTLRE+EYCNLCGEKGHRQFECPTRHNTKVKMVNVKCAICGDTSHPTRDCRMGGQAGAQ GNKEVLDQEYLNFMAELGEGPPP SSS++ PPPR SPRQE P PP+AP A +SSSSSS+SSSS YY AG P H Q + A SPYY+T AG Y Y++++ P A YG NSL GGY+Y+ +Y QQ AAAS Y QH H H YA PPPP
Sbjct: 1 MASDGGNADTYAYEEEQERKALLQSLHGPMKTWFHGGEASSIKERFGPYPTFWQDLLTWEHTRVVQKLYLRWMDTGASGEALLAILEANMEKPK----EGEKGVDEGGEAQNGK---QEKEADEGRTGPGETTTSNI-----------EKPAEAQATEPQKEEKEQKRRSRWGATEEGGGGE-----------AGEGKRRSRWGDGGAD----GNKKKSRWSQPEATPSSSMDPDTLQEIIALQLRLDNIHQRTATVTMDALAQESNPDKSPSPPPIYDSHGKRLNTREERMKAALKKERQDVIERLLKINPLFRPPADYVRQKPFRRLYIPIKEFPTYNFIGLIIGPRGATQKQMEKDTGAKISIRGKGSVKEGSRNRML--GANKDVQDEFDDLHVHVSGETEEIVEKASEMVAKLLIPIDDAVNSQKMEQLRQLALINGTLREDEYCNLCGEKGHRQFECPTRHNTKVKMVNVKCAICGDTSHPTRDCRMGGQAGAQSGNKEVLDQEYLNFMAELGEGPPP---SSSAAPPPPRSSPRQEQKDAAPPPPPAAPPTAAHTSSSSSSTSSSSPYYNT--PGASAGGGQPPH----QHTGAPSPYYQT--------------PAGSGYGYASHYAQP-PPQHGAPYGANSLAGGGMGGYEYAAYYQQQQAAASAYYSQQQHYHPQYHMHGAYADGGPPPP 641
The following BLAST results are available for this feature:
BLAST of NO02G05970.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 3.20e-226 / Id = 67.43 Sequence XP_005854854.1
Match Name E-value Identity Description
XP_005854854.1 3.200e-226 67.43 hypothetical protein NGA_0419300, partial [Nannoch... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO02G05970.2 ID=NO02G05970.2|Name=NO02G05970.2|organism=Nannochloropsis oceanica|type=mRNA|length=2700bp back to top protein sequence of NO02G05970.2
>NO02G05970.2-protein ID=NO02G05970.2-protein|Name=NO02G05970.2|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp back to top mRNA from alignment at chr2:1592724..1597664-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05970.2 ID=NO02G05970.2|Name=NO02G05970.2|organism=Nannochloropsis oceanica|type=mRNA|length=4941bp|location=Sequence derived from alignment at chr2:1592724..1597664- (Nannochloropsis oceanica)ATGGCGTCCGACGGTGGCAATGCAGACACGTAC
GCCTACGAGGAGGAGCAGGAACGAAAGGCCTTGTTGCAGAGTTTGTACGG
CCCGATGAAGACCTGGTTTCATGGGGGGGAGGCGAGCAG GTAAAGAGGAA
AAGAGGGAGGGGGCATGTGGAACGGCCACTCGTGCGGGTTGTAGGAAAGG
TCGGCGGCTGCTTGTCATTCGGCTTGTATGGATGTAGCATGCAGCTTGTC
TAGTCCGCGGCGGGAGGAAACCATATGCCTACCTGATGGGATGTCTTCGT
ATACTCACCCATCATCTAGTAACTTATTTTCCATCTCCGTTCATTCATCT
TTTCTTGGCTGGACACCCACAGCATCAAGGAGCGCTTCGGACCCTACCCT
TCGTTTTGGCAAGACCTGCTCACGTGGGAGCACACACG GTGGGTGGAGTA
AGGGGGGTGGGGGGAGGGGAAGAATTAAAGGGGAAATAAAAGACGTGAAG
GGCACGTCATGGATTCGATAGGGTATGCTGGAGTGGGTGCCGGTAGTAGG
TCCAATCACCTTACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTAGCG
TGGTCCAAAAGTTGTATCTGCGGTGGATGGACACAGGGGCCAGCGGGGAG
GACTTGCTGGGTATCTTGGGAGATACAAAGAAAGAGGTGACAGTGGAAGT
GGTCGAGGCAGCTGCTGGGACGAATGAGGGAGGGAAGGAGGGAGGGGGGG
AGGTAGGGGGGGAGGACAGGCATGTGAATGGGGGAGCAGGGAATGGAGGG
GGGCGCTCGTCTAGCGCCCTGACGGAGGAGCAGCAGCAGCAGGAAGAGCA
GAAGGAGCAGGAGCAGGAGCAGGAGCATGAGGAGAAGAAAGCGGAGGAAA
AAGAGAAGCGGCGCAAGAGCCGGTGGGGGGGGGGGGAGGGGGAGACAGGA
ACACTGACAGCAGCAGCAACAACAGCAGCAGGAGAGTCAAAACGACGCTC
ACGGTGGGGGGATGGGGGTGGGGCCACCGGGGAGGCGGGCAACAAGAAGA
AGTCCAG GTAGGGAGCCATGTCAAGCAACGGATGGGGGATAAGGACAACG
ATGGAGAGGCGAGAGAAACGAATAACCGCATGACCATACGCCCTAGGAGG
ACTTGCGTCCCGCGTGTCTTTTGGGAGCGTCGGCCCCTTGCCACAAGACT
CACCCCTCCCTTCCTCCCTCCCTCCCCCTCCCTCTCTCCCTCCTTACCTC
CCTTCTTCTCAGGTGGAGTCAGCCCGAAGCCCCTCCCGGCGCTGCCTTGG
ACCCCGAGACGCTGCAGGAGATCATCGCCCTACAGCTCCGCCTGGACAAC
ATCCACCAACGCACG GTAGGGAGGAAGGGGAGGGAGGGAGGGAGGGAAAG
GGCGGAGGGTGGGAAGAACAGAGGTCAACCTTGTGATCAAACACCTTTCA
CTCATGCATTGCCTCTTCTATCCCTCCCTCCCTCCCTCCCTTCCGTTTCC
ATTCCTGCCCAGGCGACCGTGGTGATGGACGCTCTGGCCAAAGAAAGCGA
CCCGGATAAATCCCCCTCCCCGCCACCCATCTATGACGG GTACGCTCCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTGCTT
TCCTTCCTCACACGGACTGTCCTCTTCACTTCCCCGTCTTCCCCTCTTTT
CCCTCCGTCCCCTTCCTCTCACTGTTTTTTCCATTCCTTTTTCTCCTCTT
TCTCCTCCCTCTCTTTCTTCCACCCTCAGTCAGGGCAAGCGACAAAACAC
GCGGGAGGAGCGGATGCGGGCCTCGCTCAAGGTTGAACGACAA GTACGTC
TACACCCCCTCTCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCGC
CTCTCCCTGTTCCCCTTCTCGATTTTTTTGCCTCTTTCGCCGCTTCCAAT
CGCCTAAGCATCCCTTGCCTCCATTATGACGCTCCCTCCCTCCCTCCCTC
CCTCCCTCCAGGAAGTAATTGAACGCCTCCTTAAGATCAATCCCCTCTTC
CGACCGCCGGCTGACTACGTCCGCCAGAAGCCCTCCCGACGCCTCTACAT
CCCCATCAAG GTAGGGAGCGAGGGAGGGAGTGAGGGAAGGGGATCTGTAC
TCATCGAAGTTCCCAGGGAGGGAGGGGAGGGGATAAGGCACTGCAATAGC
GATCATCCCTGTCTCTCATTCATGCACTCAATCTCCCTCCTTCCCTCCCT
CCCTCCCTCCCTCCCTCAGGAGTTTCCCACCTACAACTTTATCGGTCTCA
TCATCGGACCGCGCGGGGCCACCCAAAAGCAAATGGAGAAAGACACGGGA
GCCAAGATCTCCATCCGAGGGAAAG GTACCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCCTCCATCCGTGGGCGTTTCGTCTCATTCGG
CGTATCATCTTTCCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCAA
GGTTCGGTCAAGGAGGGCGCTCGTGGACGGATGGCCAGCTCCAGCGCAAA
CAAAGACTTGCAAGACGAG GTGCCTCCCTTCCTCCCTTCCTCCCTCCCTT
CCTCCCTCCCTCCGTCCCTCCCTCCTTCCCTTTGTCGCGCCTTTTTCGGA
TCTTTCTCAACGTTGGACTCATTTCTGGCCCGTCCCTCCCTTCCTCCCTC
CCTCCCTCCCCTGTCAGTACGACGACCTTCATGTGTACATCACGGGCGAG
ACAGAAGCCATC GTAAGCAGGAAGGGAGGGACGGAGGGAGGGAGGGAGGG
ATAGAAAAAGGGCGCGAAAAGCCATGGAAAGTGGAGTGGACATAATGTCC
TGATTGCACCTGTTGATATCTGATCTCACGTCCCCTCCCTCCCTCCCTCC
CTCCCTTCCTCCAGGTGGAGCAGGCCTCCGAGATGGTGGCCAAGCTCCTG
GTGCCCATCGACGACGCAGTCAACTCCCAGAAGATGGAG GTAGGGAGGGA
GGGAGGGACAGAGGGAGGGAGAGAGGGGGAGAGGGAGAGAGGGACAGAGG
GAGGGAGGACAACGGTGGAGCATGTAATTTCATCCATACCTTATCCCTTC
TTCCCTCCCACCCTCCCTCCCGCCCTCCAAAAGCAACTTCGGCAGCTGGC
CTTGATCAACGGCACGCTTCGAGAGGAGGAGTACTGCAACTTGTGCG GTA
CGTGAAACAGCAGTCGCAGCAGCGGCAGGGATGAAGGGAGGGAGGGAGGG
AGGGAGGGGTGAGACAACAAGCTCAGGAGAAGGGGAGGGAGGGAGGGAAG
GAGGGATTTTTGACTGACATGACACCCCGACCCAAGAAGGTGTTTTGACT
GACATGACACCCCGACCCGTGAATGGCACGACAGGCGAAAAGGGCCACCG
GCAATTTGAATGCCCCACGCGACACAATACCAAG GTAGTTTCCGTTCGCT
CTCTTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACCCACAAACCCG
AACATGGAAGTCCTCACCCCTCCGTCCCTCCCTCCCTCCCTTCTCCAGGT
GAAGATGGTGAACGTGAAGTGCGCCATCTGCGGGGACACGTCGCATCCTA
CACGGGACTGTCGCATGGGCGGCCAAGCCGGAG GTAAGGATGGGAAAACA
GAAAAGAGAAGGATGGAAGGGTGAATGACGAAATTGGCATGCACAAACAG
GGCCCTAATCATCCCTTTCCTCCATCCCTCCCTCCCTCCAGCCCAAGGCG
GGAACAAGGAAGTTCTAGATCAAGAATATCTCAATTTCATGGCCGAGCTC
GGCGAGGGGCCCCCTCCCTCCTCCTCCTCCTCCTCCTCAAGTGCTCCTCC
CCCCCGCCCTTCCCCTCGTCAGGAATCTCCGGCCCCTCCCTCAGCGCCCG
CCTTGTCTTCCTCCTCGTCCTCTTCCTCCTCGTCCTCCTCCTCCTACTAC
GGCGCACAAAAGACAGCAGGCGAGGCAGGTCACTCTGCGCCCCAGCACCA
CCAGCAGCAGCAGCCAAGTGCTGCCTCCTCTCCTTACTATCGAACATCAG
AAGCAGCAGTAGGGACAACAGCAGCAGCCACAGGAGCTGCAGCCGGAGGG
ACGTACGCTTACTCTACCAACCACCACAATCCTTATTCTGCTGCTCCTGC
TGCCTCGTATGGAGGGAACTCTTTGGGAGGATACGACTACTCCACTTTCT
ACAGTCAACAAGCCGCGGCTGCCTCTTACTACACACAACCGTACCAGCAC
CAGCACCAGCACCAGCACCAGCAATACATGTATGCCGCCTACCCTCCCCC
TCCCCCTCCCCCTCCCCCTCCCCCTCCCTCGGGTCCGGGGGGGCTGCCCC
CTCCCCCGCCCCCGCCACCGCCACCGCCTGAGACGGCCTAG back to top Coding sequence (CDS) from alignment at chr2:1592724..1597664-
>NO02G05970.2 ID=NO02G05970.2|Name=NO02G05970.2|organism=Nannochloropsis oceanica|type=CDS|length=2133bp|location=Sequence derived from alignment at chr2:1592724..1597664- (Nannochloropsis oceanica) back to top