NO02G05910.2, NO02G05910.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05910.2
Unique NameNO02G05910.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1320
Alignment locationchr2:1575377..1577317 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1575377..1577317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05910.2 vs.
Match: EWM30066.1 (r- vamp71-family [Nannochloropsis gaditana])

HSP 1 Score: 315.5 bits (807), Expect = 1.200e-82
Identity = 161/194 (82.99%), Postives = 175/194 (90.21%), Query Frame = 0 
Query:    1 MSIVYDQHVFHYVVDSSGGGQGQSSSSSSTSSPLIYLCMVDDAENKRRLAFLFLEEVQRRFMSTFGEAAYTAIAFAMNESFSPSLKAMMDFYNADPSADNLRQLRTKIDDTKSVMVENIDQVLARGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRSLLLAFVLSLAIFLFTALGCGGFDFHRCKK 195
            MSI+YDQH+FHY+VD    GQG +      SSPLIYLCMVDDAENKRR+AFLFLEEVQRRFM+ +G+ AYTAIAFAMNESFSPSLK+MMDFYNADPSADNL+QLRTKIDDTKSVMVENIDQVL RGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNR LLL+F L+LA+F  T LGCGGFDFH+CKK
Sbjct:   54 MSIIYDQHIFHYLVD----GQGHA------SSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKCKK 237
The following BLAST results are available for this feature:
BLAST of NO02G05910.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30066.11.200e-8282.99r- vamp71-family [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05910NO02G05910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05910.2NO02G05910.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05910.2.cds1NO02G05910.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05910.2.cds2NO02G05910.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05910.2.cds3NO02G05910.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05910.2.cds4NO02G05910.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05910.2 ID=NO02G05910.2|Name=NO02G05910.2|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
ACAGACAGGAGCAGTTTAGCAAAGACAGACTCCCAGCTTCCTGATTTTGA
ACGCGAGCCTTCTTCCCTCCCTCCGCACTAGCCCGCCCTCCTCCTCCTCT
GCCTGCAGCCTGCTCCGACCATCACACATTGATAATGGCCATCCTCTACG
CTCTCGTCGCCCGGGGCAAGACTGTATTGGCCCAGTTCACGAGCACAAGC
GGCAACTTTCCCACCGTCACACGTTTTCTCCTCGCGCGAATCGGGGATCG
GGGCATGCCACATGGAGGCGGCGAAGCCGGGTACGTACATGGGAAGCGGT
ATATGTATGTGTCCGTCTCGGATTGCGAAATGGGGCATGCTTCTGCCTAC
TGGTGTGCCTGTCAGGGTCTTCTATACCGTATTTGTTCGCTTTCTCCTGC
TCCATTTGCTTCAGGTGCATGCATATTTAATAACACGTAAATTTCTCCGA
TCAATCCGTCCGTCGCCTCAGTGGGCAGAAAATGTCGATCGTCTACGACC
AGCACGTCTTCCATTACGTCGTTGACAGCAGCGGAGGCGGCCAGGGCCAG
TCCTCCTCCTCCTCCTCCACCTCCTCCCCCCTCATCTACCTGTGCATGGT
GGACGATGCCGAGAACAAGCGCCGCCTCGCCTTCCTGTTCCTTGAAGAGG
TTCAACGTCGCTTCATGTCCACATTCGGCGAGGCAGCCTACACGGCCATC
GCCTTCGCCATGAACGAGTCCTTCTCCCCCTCCCTCAAGGCCATGATGGA
CTTCTACAACGCCGATCCCTCCGCCGACAACCTGCGGCAGCTGCGGACGA
AGATCGATGACACCAAGAGTGTGATGGTGGAGAACATCGACCAGGTCCTA
GCCAGGGGCGAGAAGATCGAGCTGCTGGTGGACAAGACTGACAGGCTCAG
CCAGCAGGCCGTGCAGTTCAAAAGACAATCTCGGCGGCTACAGCAGAGCA
TGTGGTGGCGGCGCCTCAACCGGTCCCTCCTCCTCGCTTTTGTTCTATCC
TTAGCTATCTTCCTCTTCACTGCCCTCGGCTGCGGTGGCTTTGACTTCCA
CAGGTGCAAAAAATAGTGAAACACGGTCAGAATGCCTTCCCTCCCTCCCT
CCCTCCCTCTCTGCCTGCCTCCCTCCCTCCCCTCCATCCTCCTATGCTTC
AAAGGTAGAGGGGGGAGGGACCTTGGTTGTAAAGGGAGGGAGCAAGAGAG
AGAGGAGAAGCGAGGGAACAAGTGGGATGTAAATTCTTGTAGGAACAAAC
GAACAAAGGAAGAAGGACGGCAAAAGACGCAGAAGTCGAAGAAATGAAAA
AAAGTAGACGAAATGAGAAA
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protein sequence of NO02G05910.2

>NO02G05910.2-protein ID=NO02G05910.2-protein|Name=NO02G05910.2|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MSIVYDQHVFHYVVDSSGGGQGQSSSSSSTSSPLIYLCMVDDAENKRRLA
FLFLEEVQRRFMSTFGEAAYTAIAFAMNESFSPSLKAMMDFYNADPSADN
LRQLRTKIDDTKSVMVENIDQVLARGEKIELLVDKTDRLSQQAVQFKRQS
RRLQQSMWWRRLNRSLLLAFVLSLAIFLFTALGCGGFDFHRCKK*
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mRNA from alignment at chr2:1575377..1577317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05910.2 ID=NO02G05910.2|Name=NO02G05910.2|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp|location=Sequence derived from alignment at chr2:1575377..1577317- (Nannochloropsis oceanica)
ACAGACAGGAGCAGTTTAGCAAAGACAGACTCCCAGCTTCCTGATTTTGA
ACGCGAGCCTTCTTCCCTCCCTCCGCACTAGCCCGCCCTCCTCCTCCTCT
GCCTGCAGCCTGCTCCGACCATCACACATTGATAATGGCCATCCTCTACG
CTCTCGTCGCCCGGGGCAAGACTGTATTGGCCCAGTTCACGGTAAGGCGG
ACAGCGAAGAAAAGGAGGACTGGGAAGGGGGTTGCTGCTTCGGGTGATGT
ACATGTGCATTCTGTTGCCCATCCCCTTCCTCTTTTCCTCCCTCTCGTTC
TTGGGACCCAAATAATATCGCAGAGCACAAGCGGCAACTTTCCCACCGTC
ACACGTTTTCTCCTCGCGCGAATCGGGGATCGGGGCATGCCACATGGAGG
CGGCGAAGCCGGGTACGTACATGGGAAGCGGTATATGTATGTGTCCGTCT
CGGATTGCGAAATGGGGCATGCTTCTGCCTACTGGTGTGCCTGTCAGGGT
CTTCTATACCGTATTTGTTCGCTTTCTCCTGCTCCATTTGCTTCAGGTGC
ATGCATATTTAATAACACGTAAATTTCTCCGATCAATCCGTCCGTCGCCT
CAGTGGGCAGAAAATGTCGATCGTCTACGACCAGCACGTCTTCCATTACG
TCGTTGACAGCAGCGGAGGCGGCCAGGGCCAGTCCTCCTCCTCCTCCTCC
ACCTCCTCCCCCCTCATCTACCTGTGCATGGTGGACGATGCCGAGAACAA
GCGCCGCCTCGCCTTCCTGTTCCTTGAAGAGGTTCAACGTCGCTTCATGT
CCACATTCGGCGAGGCAGCCTACACGGTAAGCACCCTTCCTCCCTCTTTT
CCTTCCTTCCTTCCTCCCTCCCTCTTTTCCTTCCTTCCTTCCTCCCTCCC
TCTTTCCCTCCAATCATCCCCAGGCGACCACCCCTACCATAAACGTGCGC
CTCCTTCCCGTCCTCAAGGCTGTGATGGACTCCCACCAATTCAACCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGCCATCGCCTTCGC
CATGAACGAGTCCTTCTCCCCCTCCCTCAAGGCCATGATGGACTTCTACA
ACGCCGATCCCTCCGCCGACAACCTGCGGCAGCTGCGGACGAAGATCGAT
GACACCAAGAGTGTGATGGTGGAGAACATCGACCAGGTAGGGAGGGAGGG
AGGAAGGAGGGAGGGAGGATTGGGCTGCCCATGTGTTTGAGTTCTGAAGA
AGCCGGCCCAAGGGTAAACTAAACAGGCGATCGCATCGGCCGTGTGCCAC
CGCTTACTCCTCCCGCCCTCCCGCCCTCCCTCAAGGTCCTAGCCAGGGGC
GAGAAGATCGAGCTGCTGGTGGACAAGACTGACAGGCTCAGCCAGCAGGC
CGTGCAGTTCAAAAGGTAGGAGGGAGGGAGGGAGCCAAGAAGATCTCATA
TGGCGCCTGGGTGTCTCCACCTTTCTCCTGACGGCCTTTTTCTCCCTCCG
TCCCTCCCTCCTTCCCTTTCTCGCTCCCTCCCTCGCCACCCTTAGACAAT
CTCGGCGGCTACAGCAGAGCATGTGGTGGCGGCGCCTCAACCGGTCCCTC
CTCCTCGCTTTTGTTCTATCCTTAGCTATCTTCCTCTTCACTGCCCTCGG
CTGCGGTGGCTTTGACTTCCACAGGTGCAAAAAATAGTGAAACACGGTCA
GAATGCCTTCCCTCCCTCCCTCCCTCCCTCTCTGCCTGCCTCCCTCCCTC
CCCTCCATCCTCCTATGCTTCAAAGGTAGAGGGGGGAGGGACCTTGGTTG
TAAAGGGAGGGAGCAAGAGAGAGAGGAGAAGCGAGGGAACAAGTGGGATG
TAAATTCTTGTAGGAACAAACGAACAAAGGAAGAAGGACGGCAAAAGACG
CAGAAGTCGAAGAAATGAAAAAAAGTAGACGAAATGAGAAA
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Coding sequence (CDS) from alignment at chr2:1575377..1577317-

>NO02G05910.2 ID=NO02G05910.2|Name=NO02G05910.2|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at chr2:1575377..1577317- (Nannochloropsis oceanica)
ATGTCGATCGTCTACGACCAGCACGTCTTCCATTACGTCGTTGACAGCAG
CGGAGGCGGCCAGGGCCAGTCCTCCTCCTCCTCCTCCACCTCCTCCCCCC
TCATCTACCTGTGCATGGTGGACGATGCCGAGAACAAGCGCCGCCTCGCC
TTCCTGTTCCTTGAAGAGGTTCAACGTCGCTTCATGTCCACATTCGGCGA
GGCAGCCTACACGGCCATCGCCTTCGCCATGAACGAGTCCTTCTCCCCCT
CCCTCAAGGCCATGATGGACTTCTACAACGCCGATCCCTCCGCCGACAAC
CTGCGGCAGCTGCGGACGAAGATCGATGACACCAAGAGTGTGATGGTGGA
GAACATCGACCAGGTCCTAGCCAGGGGCGAGAAGATCGAGCTGCTGGTGG
ACAAGACTGACAGGCTCAGCCAGCAGGCCGTGCAGTTCAAAAGACAATCT
CGGCGGCTACAGCAGAGCATGTGGTGGCGGCGCCTCAACCGGTCCCTCCT
CCTCGCTTTTGTTCTATCCTTAGCTATCTTCCTCTTCACTGCCCTCGGCT
GCGGTGGCTTTGACTTCCACAGGTGCAAAAAATAG
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Synonyms
Publications