NO02G05510, NO02G05510 (gene) Nannochloropsis oceanica

Overview
NameNO02G05510
Unique NameNO02G05510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length833
Alignment locationchr2:1465114..1465946 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1465114..1465946 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015157TMA7
Homology
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BLAST of NO02G05510 vs. NCBI_GenBank
Match: SHO79978.1 (Hypothetical protein MSYG_4333 [Malassezia sympodialis ATCC 42132])

HSP 1 Score: 62.8 bits (151), Expect = 8.200e-7
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0 
Query:   64 MPGRDGGKAKPLKAPKKAAKEMTEEDLAFKAKQKADAAATKKAAEALKGKKK 116
            M GR GGK KPLKAPKK  KE+ E+DLAFK KQK +AAA K A E LKGKKK
Sbjct:    1 MSGRQGGKLKPLKAPKKTNKELDEDDLAFKQKQKEEAAAKKAAIEKLKGKKK 52
The following BLAST results are available for this feature:
BLAST of NO02G05510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
SHO79978.18.200e-771.15Hypothetical protein MSYG_4333 [Malassezia sympodi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05510.1NO02G05510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575485gene_1137Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05510.1NO02G05510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05510 ID=NO02G05510|Name=NO02G05510|organism=Nannochloropsis oceanica|type=gene|length=833bp
CCTCAAAAAGCTTTTTGAGGGGTTGCGAACACAGCCTCTATTGAAGCGCG
GCAACTCGAAAGGGAGAAATTGTGGCGATGATGACGCCTTGCTCTTCGGA
CGAGCCTTGTCCTTAAAAGCGCACGACCACAGACCATGAAAGCCACCATG
CTCCTGTAACGTGTTGCATGAGGGTTACAGGTTTCCCGGTGCAGGAGATG
ACAGCACAGTCCTCCGCTTGCTTTCCACCCTACCCTCACCCACTTTCTTT
CCCCCCTACCATGTCTACGCGCCATCCACTCACACCATACGACCCCACAC
GGGCACCACCCACAGGCACCGCCGCCAGCAGCAGTATTTCTAGATCAAGT
TCACTCATGgtacgtcgcctgtctattcttgcatatttgccagaataccc
aggcccctctcctctcccccgcagcccggtccctaccgaccggcgacggc
acgccccattctcctccatctccgcactcatcgcaccccacacagCCAGG
TCGCGATGGTGGCAAGGCCAAGCCCTTGAAGGCACCCAAGAAGGCAGCCA
AGGAGATGACCGAGGAAGACTTGGCTTTCAAGGCCAAGCAGAAGGCGGAT
GCCGCGGCCACAAAGAAGGCGGCGGAGGCGCTCAAGGGCAAGAAAAAATA
AAAAGAGAGTGAGGAGCTAGATTTGTGCCAGTGAAAGAGGAGGAAAAGAT
GAGCGACCATACGTAGCACTGAATGCAGCCTGGCCAGAGGTGGAAACAAG
TCTTGAACGAGGAGGACAAGGGGGAAGAAAGATGCCCTTATATCAAAGTA
TGAACCAAGGGCGGGACACATCCACAGATCAAG
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protein sequence of NO02G05510.1

>NO02G05510.1-protein ID=NO02G05510.1-protein|Name=NO02G05510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MRVTGFPVQEMTAQSSACFPPYPHPLSFPPTMSTRHPLTPYDPTRAPPTG
TAASSSISRSSSLMPGRDGGKAKPLKAPKKAAKEMTEEDLAFKAKQKADA
AATKKAAEALKGKKK*
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Synonyms
Publications